Rh2CG631600

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000502
Physical Location & Seq
Forward (+)
80382914 .. 80393366
10453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG631600.1

Sequence Viewer

Length: 753 bp
ATGGCGAAGATCAAGATTGGCATAAATGGATTCGGAAGGATTGGCCGGTTGGTGGCCAGAGTTGCTCTGCAGAGAGATGACATCGAACTCGTTGCCATTAACGATCCTTTCTTGACTGCTGATCACATGAGATACATGTTTAAGTACGACAGTGTTCATGGGCAGTGGAAGCATGGCGAGCTTAAGGTTAAGGATGAAAGCACACTTCTCTTTGGTGATAAGCCCGTTAAAGTTTTTGATTCTAGGTTCTTTCGATGTGATGTAGCTACTCAAAAGACTGTTGATAGTCCACTAATGAAAGACTGGAGAGGTGGTAGAGCTGCTGGCCATAACATCATTCCCACTAGTACTGGAGCTGCTGAGGGTGTTGGTAAAGTGCTGCCGGCACTGGAAGGGAAGCTGACAGGAATGGCCTTCTGCATTCCCACTGTTGATGTTTCTGTGGTTGACCTCACTGTGAGACTTGAGAAGCAGGCTACTTATGATGAGATCAAAAATGCTATCAAGACAGAATCTGAGGGTAGCCTGAAAGGAATCCTTGGATACACTGATGATGATGTGGTTTCCACCGACTTTTTAGGTGACAATAGGTCGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAACTCGTCTCTTGGTATGATAATGAATGGGCTTATAGCTCACGAGTTATCGACTTGATCTGTCACATGGCCTCTGTTAGCCAAGATGAAAGTTCAGAGGCAAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

250

Amino Acids

27.56

Weight (kDa)

5.43

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 82 1e-22 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 88 - 220 2.6e-53 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 3 cut(s) 43, 54, 325
AcsI RAATTY 1 cut(s) 745
AfaI GTAC 2 cut(s) 146, 349
AfiI CCNNNNNNNGG 1 cut(s) 52
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 628
AhdI GACNNNNNGTC 1 cut(s) 589
AhlI ACTAGT 1 cut(s) 344
AluBI AGCT 6 cut(s) 181, 266, 320, 356, 400, 681
AluI AGCT 6 cut(s) 181, 266, 320, 356, 400, 681
Alw26I GTCTC 2 cut(s) 454, 655
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 5 cut(s) 43, 54, 325, 411, 711
ApeKI GCWGC 3 cut(s) 320, 356, 379
ApoI RAATTY 1 cut(s) 745
AsuHPI GGTGA 2 cut(s) 227, 593
BalI TGGCCA 2 cut(s) 56, 327
BauI CACGAG 1 cut(s) 684
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 307, 343, 366
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciVI GTATCC 1 cut(s) 536
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 454, 655
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 2 cut(s) 243, 345
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 182
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 3 cut(s) 321, 357, 380
BlsI GCNGC 3 cut(s) 322, 358, 381
BmcAI AGTACT 1 cut(s) 349
BmeRI GACNNNNNGTC 1 cut(s) 589
BmsI GCATC 1 cut(s) 595
BpmI CTGGAG 2 cut(s) 325, 372
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 485
BsaJI CCNNGG 2 cut(s) 538, 609
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 2 cut(s) 45, 382
Bse1I ACTGG 3 cut(s) 308, 355, 393
BseDI CCNNGG 2 cut(s) 538, 609
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 351, 507
BseNI ACTGG 3 cut(s) 308, 355, 393
BseXI GCAGC 3 cut(s) 307, 343, 366
BshFI GGCC 5 cut(s) 45, 56, 327, 413, 713
BsiSI CCGG 2 cut(s) 46, 383
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 454, 655
BsmBI CGTCTC 1 cut(s) 655
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 5 cut(s) 45, 56, 327, 413, 713
Bsp143I GATC 5 cut(s) 9, 103, 121, 489, 699
BspANI GGCC 5 cut(s) 45, 56, 327, 413, 713
BspCNI CTCAG 2 cut(s) 352, 508
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 45, 382
BsrI ACTGG 3 cut(s) 308, 355, 393
BssAI RCCGGY 2 cut(s) 45, 382
BssECI CCNNGG 2 cut(s) 538, 609
BssMI GATC 5 cut(s) 9, 103, 121, 489, 699
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 2 cut(s) 538, 609
Bst2BI CACGAG 1 cut(s) 684
Bst4CI ACNGT 4 cut(s) 152, 280, 430, 457
BstAFI CTTAAG 1 cut(s) 182
BstC8I GCNNGC 4 cut(s) 179, 325, 384, 474
BstDEI CTNAG 2 cut(s) 360, 516
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 5 cut(s) 12, 106, 124, 492, 702
BstMAI GTCTC 2 cut(s) 454, 655
BstMBI GATC 5 cut(s) 9, 103, 121, 489, 699
BstMWI GCNNNNNNNGC 4 cut(s) 62, 169, 178, 620
BstNSI RCATGY 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 307, 343, 366
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 5 cut(s) 45, 56, 327, 413, 713
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 6 cut(s) 157, 170, 386, 426, 453, 546
Cac8I GCNNGC 4 cut(s) 179, 325, 384, 474
CaiI CAGNNNCTG 1 cut(s) 515
Cfr10I RCCGGY 2 cut(s) 45, 382
Csp6I GTAC 2 cut(s) 145, 348
CviAII CATG 5 cut(s) 127, 136, 158, 173, 709
CviQI GTAC 2 cut(s) 145, 348
DdeI CTNAG 2 cut(s) 360, 516
DpnI GATC 5 cut(s) 11, 105, 123, 491, 701
DpnII GATC 5 cut(s) 9, 103, 121, 489, 699
DriI GACNNNNNGTC 1 cut(s) 589
EaeI YGGCCR 3 cut(s) 43, 54, 325
Eam1105I GACNNNNNGTC 1 cut(s) 589
Eco130I CCWWGG 2 cut(s) 538, 609
EcoT14I CCWWGG 2 cut(s) 538, 609
ErhI CCWWGG 2 cut(s) 538, 609
Esp3I CGTCTC 1 cut(s) 655
FaeI CATG 5 cut(s) 130, 139, 161, 176, 712
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FatI CATG 5 cut(s) 126, 135, 157, 172, 708
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 321, 357, 380
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 321, 357, 380
FspBI CTAG 2 cut(s) 243, 345
GluI GCNGC 3 cut(s) 321, 357, 380
GsuI CTGGAG 2 cut(s) 325, 372
HaeIII GGCC 5 cut(s) 45, 56, 327, 413, 713
HapII CCGG 2 cut(s) 46, 383
Hin1II CATG 5 cut(s) 130, 139, 161, 176, 712
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 4 cut(s) 30, 239, 512, 534
HpaII CCGG 2 cut(s) 46, 383
HphI GGTGA 2 cut(s) 227, 593
Hpy166II GTNNAC 2 cut(s) 290, 448
Hpy188I TCNGA 3 cut(s) 35, 517, 739
Hpy188III TCNNGA 5 cut(s) 13, 112, 505, 684, 750
Hpy8I GTNNAC 2 cut(s) 290, 448
HpyAV CCTTC 3 cut(s) 30, 386, 424
HpyCH4III ACNGT 4 cut(s) 152, 280, 430, 457
HpyCH4V TGCA 2 cut(s) 70, 420
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 169, 178, 620
HpyF3I CTNAG 2 cut(s) 360, 516
Hsp92II CATG 5 cut(s) 130, 139, 161, 176, 712
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 5 cut(s) 9, 103, 121, 489, 699
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 3 cut(s) 307, 343, 366
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 243, 345
MaeIII GTNAC 2 cut(s) 581, 704
MalI GATC 5 cut(s) 11, 105, 123, 491, 701
MboI GATC 5 cut(s) 9, 103, 121, 489, 699
MboII GAAGA 1 cut(s) 19
MlsI TGGCCA 2 cut(s) 56, 327
MluCI AATT 2 cut(s) 618, 745
MluNI TGGCCA 2 cut(s) 56, 327
MnlI CCTC 6 cut(s) 302, 355, 461, 511, 724, 733
Mox20I TGGCCA 2 cut(s) 56, 327
MroNI GCCGGC 1 cut(s) 382
MscI TGGCCA 2 cut(s) 56, 327
MseI TTAA 5 cut(s) 99, 141, 183, 189, 228
Msp20I TGGCCA 2 cut(s) 56, 327
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 2 cut(s) 46, 383
Mva1269I GAATGC 1 cut(s) 420
MwoI GCNNNNNNNGC 4 cut(s) 62, 169, 178, 620
NaeI GCCGGC 1 cut(s) 384
NdeII GATC 5 cut(s) 9, 103, 121, 489, 699
NgoMIV GCCGGC 1 cut(s) 382
NlaIII CATG 5 cut(s) 130, 139, 161, 176, 712
NmuCI GTSAC 2 cut(s) 581, 704
NspI RCATGY 1 cut(s) 139
PciI ACATGT 1 cut(s) 135
PctI GAATGC 1 cut(s) 420
PdiI GCCGGC 1 cut(s) 384
PfeI GAWTC 4 cut(s) 30, 239, 512, 534
PkrI GCNGC 3 cut(s) 322, 358, 381
PscI ACATGT 1 cut(s) 135
PstI CTGCAG 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 146, 349
RsaNI GTAC 2 cut(s) 145, 348
SaqAI TTAA 5 cut(s) 99, 141, 183, 189, 228
SatI GCNGC 3 cut(s) 321, 357, 380
Sau3AI GATC 5 cut(s) 9, 103, 121, 489, 699
ScaI AGTACT 1 cut(s) 349
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 182, 464
SmoI CTYRAG 2 cut(s) 182, 464
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 2 cut(s) 618, 745
SspMI CTAG 2 cut(s) 243, 345
StyI CCWWGG 2 cut(s) 538, 609
TaaI ACNGT 4 cut(s) 152, 280, 430, 457
TaqI TCGA 5 cut(s) 84, 253, 593, 603, 693
TasI AATT 2 cut(s) 618, 745
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 4 cut(s) 30, 239, 512, 534
Tru1I TTAA 5 cut(s) 99, 141, 183, 189, 228
Tru9I TTAA 5 cut(s) 99, 141, 183, 189, 228
TscAI CASTG 6 cut(s) 157, 170, 393, 433, 460, 553
TseFI GTSAC 2 cut(s) 581, 704
TseI GCWGC 3 cut(s) 320, 356, 379
Tsp45I GTSAC 2 cut(s) 581, 704
TspDTI ATGAA 5 cut(s) 146, 210, 311, 681, 744
TspRI CASTG 6 cut(s) 157, 170, 393, 433, 460, 553
Vha464I CTTAAG 1 cut(s) 182
XapI RAATTY 1 cut(s) 745
XceI RCATGY 1 cut(s) 139
XspI CTAG 2 cut(s) 243, 345
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.