RLG00000022262

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000502
Physical Location & Seq
Forward (+)
82054306 .. 82056641
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022262

Sequence Viewer

Length: 921 bp
ATGGCCAAGATCAAGATTGCCATAAATGGTATTGAATGTTGTATTTCTTCATTGTGGTTGAGCTTTTTGCATTACATCAATGGTCTTGATCTGATGTTATGTGGTGAAGGATTTGGAAGAATCGGCCGCTTGGTGACAAGGGTTGCTCTACAAAGAGATGATATCGAAATAGTTGGTATAAATGATCCAAACATCGATGCCAAGTATATGATCTACATGTTTAAGTACGATAGTGTTCACGGTAGGTGGAAGCACCAACATGAACTTTCGCTTAAGGACGAGAAGACCATTGTCTTTGGTGACCACCCAGTTAGAATTTTTGATGGCAGGGATCCCGCGTACATCCCATGGCAAGAGGTCGATGCTGAATTTGTGGTCGAGGCCTCTGGAAATATGACGGATCACGCCAGAGCTGCTCTCCATATGCAGTATGGTGCAAGGAAGGTTGTAATTACAGTTATCCATGAGAAATTCGGTATTGTGGAGGGTCTAATGACTACGGTCCACTCTATTACTGCTTTTCAAAAAGCCGTTGATGCACCATGTCAGAAAGACTGGAGAGTCGGTAGAGCTGCTGGGCGCAACATCATTCCTAGCTCCAATACTGCTAGGAATGATGGTGTTGGTAAAGTGCTGCCGGCACTGGAAGGGAAGCTGACGGGAATGGCCTTCTGCATTCCCACTGTTGATGTTTCTGTGGTTGACTTCACTGTGAGACTTGAGAAGCAGGCTACTTATGATGAGATCAAAAATGCTATCAAGACAGAATCTGAGGGTAGCCTGAAAGGAATCCTTGGATACACTGATGATGATGTGGTTTCCACCGACTTTTTAGGTGACAATAGCTCACGAGTTATCGACTTGATCTGTCACATGGCCTCTGTTAGCCAAGATGAAAGTTCAGAGGCAGCTAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

307

Amino Acids

33.84

Weight (kDa)

5.47

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 36 - 134 3.7e-29 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 150 - 288 2.8e-50 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 560
AccII CGCG 1 cut(s) 338
AciI CCGC 2 cut(s) 127, 336
AclWI GGATC 4 cut(s) 179, 326, 339, 408
AcoI YGGCCR 2 cut(s) 3, 124
AcsI RAATTY 3 cut(s) 315, 368, 470
AfaI GTAC 2 cut(s) 227, 341
AflII CTTAAG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 2 cut(s) 35, 524
AluBI AGCT 7 cut(s) 63, 413, 572, 597, 655, 846, 911
AluI AGCT 7 cut(s) 63, 413, 572, 597, 655, 846, 911
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 4 cut(s) 179, 326, 339, 408
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 5 cut(s) 3, 124, 381, 666, 876
ApeKI GCWGC 4 cut(s) 413, 572, 634, 908
ApoI RAATTY 3 cut(s) 315, 368, 470
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 4 cut(s) 116, 145, 311, 848
AvaII GGWCC 1 cut(s) 502
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 331
BauI CACGAG 1 cut(s) 849
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 3 cut(s) 400, 559, 621
BccI CCATC 2 cut(s) 317, 611
BceAI ACGGC 1 cut(s) 515
BciVI GTATCC 1 cut(s) 791
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 2 cut(s) 594, 609
BfrI CTTAAG 1 cut(s) 272
BfuI GTATCC 1 cut(s) 791
BisI GCNGC 5 cut(s) 127, 414, 573, 635, 909
BlsI GCNGC 5 cut(s) 128, 415, 574, 636, 910
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 3 cut(s) 187, 352, 526
BmuI ACTGGG 1 cut(s) 302
BoxI GACNNNNGTC 2 cut(s) 290, 500
BpiI GAAGAC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 402, 434
BpmI CTGGAG 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 740
Bsa29I ATCGAT 1 cut(s) 195
BsaJI CCNNGG 2 cut(s) 347, 793
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 3 cut(s) 308, 560, 648
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 347, 793
BseGI GGATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 3 cut(s) 308, 560, 648
BseX3I CGGCCG 1 cut(s) 124
BseXI GCAGC 3 cut(s) 400, 559, 621
BseYI CCCAGC 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 5 cut(s) 5, 126, 383, 668, 878
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 638
BsmAI GTCTC 1 cut(s) 709
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 5 cut(s) 5, 126, 383, 668, 878
Bsp143I GATC 8 cut(s) 9, 88, 184, 210, 331, 400, 744, 864
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 2 cut(s) 127, 336
BspANI GGCC 5 cut(s) 5, 126, 383, 668, 878
BspCNI CTCAG 1 cut(s) 763
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 4 cut(s) 179, 326, 339, 408
BspTI CTTAAG 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 637
BsrI ACTGG 3 cut(s) 308, 560, 648
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 2 cut(s) 347, 793
BssMI GATC 8 cut(s) 9, 88, 184, 210, 331, 400, 744, 864
BssSI CACGAG 1 cut(s) 849
BssT1I CCWWGG 2 cut(s) 347, 793
Bst2BI CACGAG 1 cut(s) 849
Bst4CI ACNGT 5 cut(s) 242, 457, 502, 685, 712
BstAFI CTTAAG 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 639, 729
BstDEI CTNAG 1 cut(s) 771
BstDSI CCRYGG 1 cut(s) 347
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 1 cut(s) 342
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 8 cut(s) 12, 91, 187, 213, 334, 403, 747, 867
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 8 cut(s) 9, 88, 184, 210, 331, 400, 744, 864
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 413, 536
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 2 cut(s) 290, 500
BstPI GGTNACC 1 cut(s) 299
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 3 cut(s) 400, 559, 621
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BstZI CGGCCG 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 195
BsuI GTATCC 1 cut(s) 791
BsuRI GGCC 5 cut(s) 5, 126, 383, 668, 878
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 4 cut(s) 641, 681, 708, 801
Cac8I GCNNGC 2 cut(s) 639, 729
CaiI CAGNNNCTG 1 cut(s) 770
CfoI GCGC 1 cut(s) 582
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 1 cut(s) 502
ClaI ATCGAT 1 cut(s) 195
Csp6I GTAC 2 cut(s) 226, 340
CviAII CATG 6 cut(s) 217, 260, 348, 464, 543, 874
CviQI GTAC 2 cut(s) 226, 340
DdeI CTNAG 1 cut(s) 771
DpnI GATC 8 cut(s) 11, 90, 186, 212, 333, 402, 746, 866
DpnII GATC 8 cut(s) 9, 88, 184, 210, 331, 400, 744, 864
DrdI GACNNNNNNGTC 1 cut(s) 560
DseDI GACNNNNNNGTC 1 cut(s) 560
EaeI YGGCCR 2 cut(s) 3, 124
EagI CGGCCG 1 cut(s) 124
EclXI CGGCCG 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 347, 793
Eco147I AGGCCT 1 cut(s) 383
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 502
Eco52I CGGCCG 1 cut(s) 124
Eco91I GGTNACC 1 cut(s) 299
EcoO65I GGTNACC 1 cut(s) 299
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 347, 793
ErhI CCWWGG 2 cut(s) 347, 793
FaeI CATG 6 cut(s) 220, 263, 351, 467, 546, 877
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FatI CATG 6 cut(s) 216, 259, 347, 463, 542, 873
FauI CCCGC 1 cut(s) 343
FauNDI CATATG 1 cut(s) 423
Fnu4HI GCNGC 5 cut(s) 127, 414, 573, 635, 909
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 5 cut(s) 127, 414, 573, 635, 909
FspBI CTAG 2 cut(s) 594, 609
GlaI GCGC 1 cut(s) 581
GluI GCNGC 5 cut(s) 127, 414, 573, 635, 909
GsaI CCCAGC 1 cut(s) 579
GsuI CTGGAG 1 cut(s) 577
HaeIII GGCC 5 cut(s) 5, 126, 383, 668, 878
HapII CCGG 1 cut(s) 638
HhaI GCGC 1 cut(s) 582
Hin1II CATG 6 cut(s) 220, 263, 351, 467, 546, 877
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HinfI GANTC 4 cut(s) 120, 561, 767, 789
HpaII CCGG 1 cut(s) 638
HphI GGTGA 4 cut(s) 116, 145, 311, 848
Hpy166II GTNNAC 3 cut(s) 238, 505, 703
Hpy188I TCNGA 4 cut(s) 93, 549, 772, 904
Hpy188III TCNNGA 6 cut(s) 13, 86, 387, 760, 849, 918
Hpy8I GTNNAC 3 cut(s) 238, 505, 703
HpyAV CCTTC 4 cut(s) 101, 436, 641, 679
HpyCH4III ACNGT 5 cut(s) 242, 457, 502, 685, 712
HpyCH4V TGCA 5 cut(s) 70, 427, 437, 539, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 536
HpyF3I CTNAG 1 cut(s) 771
Hsp92II CATG 6 cut(s) 220, 263, 351, 467, 546, 877
HspAI GCGC 1 cut(s) 580
KroI GCCGGC 1 cut(s) 637
KroNI GCCGGC 1 cut(s) 639
Kzo9I GATC 8 cut(s) 9, 88, 184, 210, 331, 400, 744, 864
LmnI GCTCC 1 cut(s) 602
Lsp1109I GCAGC 3 cut(s) 400, 559, 621
LweI GCATC 3 cut(s) 187, 352, 526
MaeI CTAG 2 cut(s) 594, 609
MaeIII GTNAC 4 cut(s) 133, 299, 836, 869
MalI GATC 8 cut(s) 11, 90, 186, 212, 333, 402, 746, 866
MboI GATC 8 cut(s) 9, 88, 184, 210, 331, 400, 744, 864
MboII GAAGA 3 cut(s) 39, 129, 295
MflI RGATCY 1 cut(s) 331
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 315, 368, 450, 470, 913
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 570
MnlI CCTC 7 cut(s) 349, 373, 394, 478, 766, 889, 898
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 637
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 222, 273
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 675
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 2 cut(s) 413, 536
NaeI GCCGGC 1 cut(s) 639
NcoI CCATGG 1 cut(s) 347
NdeI CATATG 1 cut(s) 423
NdeII GATC 8 cut(s) 9, 88, 184, 210, 331, 400, 744, 864
NgoMIV GCCGGC 1 cut(s) 637
NlaIII CATG 6 cut(s) 220, 263, 351, 467, 546, 877
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 4 cut(s) 133, 299, 836, 869
NspI RCATGY 1 cut(s) 220
PceI AGGCCT 1 cut(s) 383
PciI ACATGT 1 cut(s) 216
PctI GAATGC 1 cut(s) 675
PdiI GCCGGC 1 cut(s) 639
PfeI GAWTC 3 cut(s) 120, 767, 789
PkrI GCNGC 5 cut(s) 128, 415, 574, 636, 910
PleI GAGTC 1 cut(s) 569
PpsI GAGTC 1 cut(s) 569
PscI ACATGT 1 cut(s) 216
PshAI GACNNNNGTC 2 cut(s) 290, 500
PspEI GGTNACC 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 575
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 2 cut(s) 227, 341
RsaNI GTAC 2 cut(s) 226, 340
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 222, 273
SatI GCNGC 5 cut(s) 127, 414, 573, 635, 909
Sau3AI GATC 8 cut(s) 9, 88, 184, 210, 331, 400, 744, 864
Sau96I GGNCC 1 cut(s) 502
SchI GAGTC 1 cut(s) 570
SfaNI GCATC 3 cut(s) 187, 352, 526
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 272, 719
SmoI CTYRAG 2 cut(s) 272, 719
Sse9I AATT 5 cut(s) 315, 368, 450, 470, 913
SseBI AGGCCT 1 cut(s) 383
SsiI CCGC 2 cut(s) 127, 336
SspMI CTAG 2 cut(s) 594, 609
StuI AGGCCT 1 cut(s) 383
StyI CCWWGG 2 cut(s) 347, 793
TaaI ACNGT 5 cut(s) 242, 457, 502, 685, 712
TaqI TCGA 5 cut(s) 165, 195, 360, 378, 858
TasI AATT 5 cut(s) 315, 368, 450, 470, 913
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 3 cut(s) 120, 767, 789
Tru1I TTAA 2 cut(s) 222, 273
Tru9I TTAA 2 cut(s) 222, 273
TscAI CASTG 4 cut(s) 648, 688, 715, 808
TseFI GTSAC 4 cut(s) 133, 299, 836, 869
TseI GCWGC 4 cut(s) 413, 572, 634, 908
Tsp45I GTSAC 4 cut(s) 133, 299, 836, 869
TspDTI ATGAA 3 cut(s) 39, 276, 909
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 4 cut(s) 648, 688, 715, 808
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 3 cut(s) 315, 368, 470
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XspI CTAG 2 cut(s) 594, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.