Rh2BG668700

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000502
Physical Location & Seq
Forward (+)
88052539 .. 88054258
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG668700.1

Sequence Viewer

Length: 675 bp
ATGGCCAAGATCAAGATTGCCATAAATGGATTTGGAAGAATCGGCCGCTTGGTGACAAGGGTTGCTCTACAAAGAGATGATATCGAAATAGTTGGTATAAATGATCCAAACATCGATGCCAAGTATATGATCTACATGTTTAAGTACGATAGTGTTCACGGTAGGTGGAAGCACCAACATGAACTTTCGCTTAAGGACGAGAAGACCATTCTCTTTGGTGACCACCCAGTTAGAATTTTTGATAGCAGGGATCCCGTGTACATCCCATGGCAAGAGGTCGATGCTGAATTTGTGGTTGAGGCCTCTGGAAATATGACGGATCATGCCAGAGCTGCTCTCCATATGCAGGTTATCCATGAGAAATTCGGAATTGTGGAGGGTCTAATGACTACGGTCCACTCTATTACTGCTTTTCAAAAAGCCGTTGATGCACCATGTCAGAAAGACTGGAGAGTCGGTAGAGCTGCTGGGCGCAACATCATTCCTAGCTCCAATACTGCTAGGAATGATGTCAAGCTAGCCCTTTCTGGTGTTGGTAAAGTGCTGCCGGCACTGGAAGGGAAGCTGACAGGAATGGCCTTCTGCATTCCCACTGTTGATGTTTCTGTGGTTGACCTCACTGTGAGACTTGAGAAGCAGGCTACTTATGATGAGATCAAAAATGCTATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

224

Amino Acids

25.04

Weight (kDa)

7.81

Isoelectric Point (pI)

26.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 4 - 107 7.9e-33 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 115 - 224 2.4e-36 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 337
AciI CCGC 1 cut(s) 46
AclWI GGATC 4 cut(s) 98, 245, 258, 327
AcoI YGGCCR 2 cut(s) 3, 43
AcsI RAATTY 3 cut(s) 234, 287, 362
AfaI GTAC 2 cut(s) 146, 260
AfiI CCNNNNNNNGG 1 cut(s) 346
AflII CTTAAG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 416
AluBI AGCT 5 cut(s) 332, 464, 489, 517, 565
AluI AGCT 5 cut(s) 332, 464, 489, 517, 565
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 4 cut(s) 98, 245, 258, 327
AoxI GGCC 4 cut(s) 3, 43, 300, 576
ApeKI GCWGC 3 cut(s) 332, 464, 544
ApoI RAATTY 3 cut(s) 234, 287, 362
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 64, 230
AsuNHI GCTAGC 1 cut(s) 517
AvaII GGWCC 1 cut(s) 394
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 3 cut(s) 319, 451, 531
BceAI ACGGC 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 3 cut(s) 486, 501, 518
BfrI CTTAAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 4 cut(s) 46, 333, 465, 545
BlsI GCNGC 4 cut(s) 47, 334, 466, 546
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 252
BmrI ACTGGG 1 cut(s) 221
BmsI GCATC 3 cut(s) 106, 271, 418
BmtI GCTAGC 1 cut(s) 521
BmuI ACTGGG 1 cut(s) 221
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 321, 353
BpmI CTGGAG 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 650
Bsa29I ATCGAT 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 3 cut(s) 227, 452, 558
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 346
BseNI ACTGG 3 cut(s) 227, 452, 558
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 3 cut(s) 319, 451, 531
BseYI CCCAGC 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 4 cut(s) 5, 45, 302, 578
BshVI ATCGAT 1 cut(s) 114
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 4 cut(s) 5, 45, 302, 578
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 6 cut(s) 9, 103, 129, 250, 319, 654
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 1 cut(s) 46
BspANI GGCC 4 cut(s) 5, 45, 302, 578
BspDI ATCGAT 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 337
BspOI GCTAGC 1 cut(s) 521
BspPI GGATC 4 cut(s) 98, 245, 258, 327
BspTI CTTAAG 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 547
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 3 cut(s) 227, 452, 558
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 6 cut(s) 9, 103, 129, 250, 319, 654
BssT1I CCWWGG 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 161, 394, 595, 622
BstAFI CTTAAG 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 519, 549, 639
BstDSI CCRYGG 1 cut(s) 266
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 6 cut(s) 12, 106, 132, 253, 322, 657
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 6 cut(s) 9, 103, 129, 250, 319, 654
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 332, 428
BstNSI RCATGY 1 cut(s) 139
BstPAI GACNNNNGTC 1 cut(s) 392
BstPI GGTNACC 1 cut(s) 218
BstV1I GCAGC 3 cut(s) 319, 451, 531
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BstZI CGGCCG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 114
BsuRI GGCC 4 cut(s) 5, 45, 302, 578
BsuTUI ATCGAT 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 266
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 551, 591, 618
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 519, 549, 639
CfoI GCGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 394
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 145, 259
CviAII CATG 6 cut(s) 136, 179, 267, 323, 356, 435
CviQI GTAC 2 cut(s) 145, 259
DpnI GATC 6 cut(s) 11, 105, 131, 252, 321, 656
DpnII GATC 6 cut(s) 9, 103, 129, 250, 319, 654
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
EaeI YGGCCR 2 cut(s) 3, 43
EagI CGGCCG 1 cut(s) 43
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 266
Eco147I AGGCCT 1 cut(s) 302
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 394
Eco52I CGGCCG 1 cut(s) 43
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 6 cut(s) 139, 182, 270, 326, 359, 438
FatI CATG 6 cut(s) 135, 178, 266, 322, 355, 434
FauNDI CATATG 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 46, 333, 465, 545
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 4 cut(s) 46, 333, 465, 545
FspBI CTAG 3 cut(s) 486, 501, 518
GlaI GCGC 1 cut(s) 473
GluI GCNGC 4 cut(s) 46, 333, 465, 545
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 4 cut(s) 5, 45, 302, 578
HapII CCGG 1 cut(s) 548
HhaI GCGC 1 cut(s) 474
Hin1II CATG 6 cut(s) 139, 182, 270, 326, 359, 438
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 2 cut(s) 39, 453
HpaII CCGG 1 cut(s) 548
HphI GGTGA 2 cut(s) 64, 230
Hpy166II GTNNAC 4 cut(s) 157, 259, 397, 613
Hpy188I TCNGA 2 cut(s) 368, 441
Hpy188III TCNNGA 2 cut(s) 13, 306
Hpy8I GTNNAC 4 cut(s) 157, 259, 397, 613
HpyAV CCTTC 2 cut(s) 551, 589
HpyCH4III ACNGT 4 cut(s) 161, 394, 595, 622
HpyCH4V TGCA 3 cut(s) 346, 431, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 428
Hsp92II CATG 6 cut(s) 139, 182, 270, 326, 359, 438
HspAI GCGC 1 cut(s) 472
KroI GCCGGC 1 cut(s) 547
KroNI GCCGGC 1 cut(s) 549
Kzo9I GATC 6 cut(s) 9, 103, 129, 250, 319, 654
LmnI GCTCC 1 cut(s) 494
Lsp1109I GCAGC 3 cut(s) 319, 451, 531
LweI GCATC 3 cut(s) 106, 271, 418
MaeI CTAG 3 cut(s) 486, 501, 518
MaeIII GTNAC 2 cut(s) 52, 218
MalI GATC 6 cut(s) 11, 105, 131, 252, 321, 656
MboI GATC 6 cut(s) 9, 103, 129, 250, 319, 654
MboII GAAGA 2 cut(s) 48, 214
MflI RGATCY 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 234, 287, 362, 369
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 462
MnlI CCTC 5 cut(s) 268, 292, 313, 370, 626
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 547
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 141, 192
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 548
Mva1269I GAATGC 1 cut(s) 585
MwoI GCNNNNNNNGC 2 cut(s) 332, 428
NaeI GCCGGC 1 cut(s) 549
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 1 cut(s) 342
NdeII GATC 6 cut(s) 9, 103, 129, 250, 319, 654
NgoMIV GCCGGC 1 cut(s) 547
NheI GCTAGC 1 cut(s) 517
NlaIII CATG 6 cut(s) 139, 182, 270, 326, 359, 438
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 2 cut(s) 52, 218
NspI RCATGY 1 cut(s) 139
PceI AGGCCT 1 cut(s) 302
PciI ACATGT 1 cut(s) 135
PctI GAATGC 1 cut(s) 585
PdiI GCCGGC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 4 cut(s) 47, 334, 466, 546
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PscI ACATGT 1 cut(s) 135
PshAI GACNNNNGTC 1 cut(s) 392
PspEI GGTNACC 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 467
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 394
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 146, 260
RsaNI GTAC 2 cut(s) 145, 259
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 2 cut(s) 141, 192
SatI GCNGC 4 cut(s) 46, 333, 465, 545
Sau3AI GATC 6 cut(s) 9, 103, 129, 250, 319, 654
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 1 cut(s) 462
SetI ASST 9 cut(s) 167, 279, 334, 351, 466, 491, 519, 567, 618
SfaNI GCATC 3 cut(s) 106, 271, 418
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 191, 629
SmoI CTYRAG 2 cut(s) 191, 629
Sse9I AATT 4 cut(s) 234, 287, 362, 369
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 1 cut(s) 46
SspMI CTAG 3 cut(s) 486, 501, 518
StuI AGGCCT 1 cut(s) 302
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 4 cut(s) 161, 394, 595, 622
TaqI TCGA 3 cut(s) 84, 114, 279
TasI AATT 4 cut(s) 234, 287, 362, 369
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 2 cut(s) 141, 192
Tru9I TTAA 2 cut(s) 141, 192
TscAI CASTG 3 cut(s) 558, 598, 625
TseFI GTSAC 2 cut(s) 52, 218
TseI GCWGC 3 cut(s) 332, 464, 544
Tsp45I GTSAC 2 cut(s) 52, 218
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 3 cut(s) 558, 598, 625
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 3 cut(s) 234, 287, 362
XceI RCATGY 1 cut(s) 139
XspI CTAG 3 cut(s) 486, 501, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.