Prupe.1G234000_v2.0.a1

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000502
Physical Location & Seq
Reverse (-)
24816924 .. 24820079
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G234000.1

Sequence Viewer

Length: 1023 bp
ATGGGATCTGACAAGAAGATCAAGATCGGAATCAACGGGTTCGGAAGAATCGGTCGTTTGGTTGCTAGAGTTGCTCTTCAGAGAGACGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCACCGACTACATGACCTACATGTTCAAGTATGACACCGTTCACGGCCCGTGGAAGCACCATGAGCTCAAGGTCAAGGACTCCAAGACCCTTCTCTTTGGCGAGAAGCCCGTCGCTGTTTTTGGGATCAGGAACCCAGAGGAGATCCCATGGGGCGAGGCCGGTGCTGATTTCATTGTGGAGTCCACTGGAGTTTTCACCGACAAGGACAAAGCTGCTTTCCACTTGAAGGGTGGTGCCAAGAAGGTTATCATCTCTGCCCCAAGTAAGGATGCTCCCATGTTTGTTGTGGGTGTCAATGAGAAGGAATACAAGCCAGACATTGACATTCTTTCTAATGCTAGCTGCACTACCAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGATTTGGAATCGTTGAGGGTCTTATGACTACAGTGCACTCCATCACTGCCACCCAGAAAACTGTTGATGGCCCATCATCAAAGGACTGGAGGGGTGGACGTGCTGCTTCCTTCAACATCATTCCTAGCAGCACTGGCGCTGCCAAGGCTGTTGGAAAGGTGCTGCCACAACTTAATGGAAAATTGACCGGTATGGCCTTCCGTGTGCCAACTGTTGATGTTTCAGTTGTTGACCTGACTGTCAGGATTGAGAAGAAGGCAACCTATGAGCAGATCAAAGCTGCCATCAAGGAGGAGTCTGAGGGCAAGCTTAAGGGCATCTTGGGTTACACTGAAGATGATGTTGTCTCCACTGACTTCATTGGTGACAGCAGGTCAAGCATTTTTGATGCCAAGGCTGGAATTGCATTGAACGACAACTTTGTCAAGCTTGTGTCGTGGTACGATAACGAGTGGGGTTACAGTTCTCGTGTTGTTGACTTGATCGTGCACGTAGCATCCACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

341

Amino Acids

37.0

Weight (kDa)

7.02

Isoelectric Point (pI)

21.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 752, 935
Acc36I ACCTGC 1 cut(s) 876
AccB1I GGYRCC 1 cut(s) 359
AclWI GGATC 4 cut(s) 13, 107, 257, 262
AcuI CTGAAG 2 cut(s) 62, 867
AfaI GTAC 1 cut(s) 956
AfiI CCNNNNNNNGG 3 cut(s) 352, 391, 499
AflII CTTAAG 1 cut(s) 824
AflIII ACRYGT 1 cut(s) 144
AgeI ACCGGT 1 cut(s) 701
AgsI TTSAA 4 cut(s) 151, 352, 628, 925
AhdI GACNNNNNGTC 1 cut(s) 886
AjiI CACGTC 1 cut(s) 614
AluBI AGCT 7 cut(s) 97, 190, 338, 468, 794, 823, 943
AluI AGCT 7 cut(s) 97, 190, 338, 468, 794, 823, 943
Alw21I GWGCWC 4 cut(s) 99, 192, 552, 1005
Alw26I GTCTC 2 cut(s) 78, 865
Alw44I GTGCAC 2 cut(s) 548, 1001
AlwI GGATC 4 cut(s) 13, 107, 257, 262
AoxI GGCC 4 cut(s) 169, 282, 583, 708
ApaLI GTGCAC 2 cut(s) 548, 1001
ApeKI GCWGC 7 cut(s) 338, 468, 617, 642, 653, 676, 794
AsiGI ACCGGT 1 cut(s) 701
AspLEI GCGC 1 cut(s) 653
AspS9I GGNCC 2 cut(s) 170, 584
AsuHPI GGTGA 3 cut(s) 115, 313, 890
AsuNHI GCTAGC 1 cut(s) 464
BaeGI GKGCMC 2 cut(s) 552, 1005
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 2 cut(s) 99, 192
BauI CACGAG 1 cut(s) 981
Bbv12I GWGCWC 4 cut(s) 99, 192, 552, 1005
BbvI GCAGC 7 cut(s) 325, 455, 604, 640, 654, 663, 781
BccI CCATC 4 cut(s) 563, 575, 595, 806
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BcoDI GTCTC 2 cut(s) 78, 865
BfaI CTAG 3 cut(s) 66, 465, 639
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 654
BfrI CTTAAG 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 876
BisI GCNGC 7 cut(s) 339, 469, 618, 643, 654, 677, 795
BlsI GCNGC 7 cut(s) 340, 470, 619, 644, 655, 678, 796
BmeRI GACNNNNNGTC 1 cut(s) 886
BmgBI CACGTC 1 cut(s) 614
BmgT120I GGNCC 2 cut(s) 170, 584
BmiI GGNNCC 2 cut(s) 257, 361
BmsI GCATC 4 cut(s) 385, 840, 892, 1019
BmtI GCTAGC 1 cut(s) 468
BpmI CTGGAG 2 cut(s) 333, 622
BpuEI CTTGAG 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 1006
BsaBI GATNNNNATC 2 cut(s) 23, 29
BsaJI CCNNGG 5 cut(s) 173, 272, 498, 657, 906
BsaWI WCCGGW 1 cut(s) 701
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 391, 499
Bse118I RCCGGY 2 cut(s) 284, 701
Bse1I ACTGG 3 cut(s) 316, 605, 652
Bse8I GATNNNNATC 2 cut(s) 23, 29
BseDI CCNNGG 5 cut(s) 173, 272, 498, 657, 906
BseGI GGATG 2 cut(s) 400, 1010
BseJI GATNNNNATC 2 cut(s) 23, 29
BseLI CCNNNNNNNGG 3 cut(s) 352, 391, 499
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 3 cut(s) 316, 605, 652
BseRI GAGGAG 2 cut(s) 278, 821
BseSI GKGCMC 2 cut(s) 552, 1005
BseXI GCAGC 7 cut(s) 325, 455, 604, 640, 654, 663, 781
BsgI GTGCAG 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 4 cut(s) 171, 284, 585, 710
BshNI GGYRCC 1 cut(s) 359
BshTI ACCGGT 1 cut(s) 701
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 4 cut(s) 99, 192, 552, 1005
BsiSI CCGG 2 cut(s) 285, 702
BslI CCNNNNNNNGG 3 cut(s) 352, 391, 499
BsmAI GTCTC 2 cut(s) 78, 865
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 4 cut(s) 171, 284, 585, 710
Bsp1286I GDGCHC 4 cut(s) 99, 192, 552, 1005
Bsp143I GATC 8 cut(s) 5, 18, 24, 112, 249, 267, 786, 996
Bsp19I CCATGG 1 cut(s) 272
BspANI GGCC 4 cut(s) 171, 284, 585, 710
BspCNI CTCAG 1 cut(s) 805
BspLI GGNNCC 2 cut(s) 257, 361
BspMI ACCTGC 1 cut(s) 876
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 4 cut(s) 13, 107, 257, 262
BspQI GCTCTTC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 824
BsrFI RCCGGY 2 cut(s) 284, 701
BsrI ACTGG 3 cut(s) 316, 605, 652
BssAI RCCGGY 2 cut(s) 284, 701
BssECI CCNNGG 5 cut(s) 173, 272, 498, 657, 906
BssMI GATC 8 cut(s) 5, 18, 24, 112, 249, 267, 786, 996
BssSI CACGAG 1 cut(s) 981
BssT1I CCWWGG 4 cut(s) 272, 498, 657, 906
Bst2BI CACGAG 1 cut(s) 981
Bst4CI ACNGT 6 cut(s) 163, 547, 577, 727, 754, 977
Bst6I CTCTTC 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 824
BstBAI YACGTR 1 cut(s) 1006
BstC8I GCNNGC 2 cut(s) 466, 821
BstDEI CTNAG 1 cut(s) 813
BstDSI CCRYGG 2 cut(s) 173, 272
BstENI CCTNNNNNAGG 1 cut(s) 497
BstF5I GGATG 2 cut(s) 400, 1010
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 1 cut(s) 653
BstKTI GATC 8 cut(s) 8, 21, 27, 115, 252, 270, 789, 999
BstMAI GTCTC 2 cut(s) 78, 865
BstMBI GATC 8 cut(s) 5, 18, 24, 112, 249, 267, 786, 996
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 7 cut(s) 71, 187, 494, 648, 659, 891, 917
BstNSI RCATGY 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 2 cut(s) 552, 1005
BstV1I GCAGC 7 cut(s) 325, 455, 604, 640, 654, 663, 781
BstX2I RGATCY 2 cut(s) 5, 267
BstYI RGATCY 2 cut(s) 5, 267
BsuRI GGCC 4 cut(s) 171, 284, 585, 710
BtgI CCRYGG 2 cut(s) 173, 272
BtrI CACGTC 1 cut(s) 614
BtsCI GGATG 2 cut(s) 400, 1010
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 6 cut(s) 309, 552, 558, 645, 843, 864
BveI ACCTGC 1 cut(s) 876
Cac8I GCNNGC 2 cut(s) 466, 821
CfoI GCGC 1 cut(s) 653
Cfr10I RCCGGY 2 cut(s) 284, 701
Cfr13I GGNCC 2 cut(s) 170, 584
Csp6I GTAC 1 cut(s) 955
CspAI ACCGGT 1 cut(s) 701
CviAII CATG 5 cut(s) 136, 145, 185, 273, 403
CviQI GTAC 1 cut(s) 955
DdeI CTNAG 1 cut(s) 813
DpnI GATC 8 cut(s) 7, 20, 26, 114, 251, 269, 788, 998
DpnII GATC 8 cut(s) 5, 18, 24, 112, 249, 267, 786, 996
DrdI GACNNNNNNGTC 2 cut(s) 752, 935
DriI GACNNNNNGTC 1 cut(s) 886
DseDI GACNNNNNNGTC 2 cut(s) 752, 935
Eam1104I CTCTTC 1 cut(s) 81
Eam1105I GACNNNNNGTC 1 cut(s) 886
EarI CTCTTC 1 cut(s) 81
Ecl136II GAGCTC 2 cut(s) 97, 190
Eco130I CCWWGG 4 cut(s) 272, 498, 657, 906
Eco24I GRGCYC 2 cut(s) 99, 192
Eco53kI GAGCTC 2 cut(s) 97, 190
Eco57I CTGAAG 2 cut(s) 62, 867
EcoICRI GAGCTC 2 cut(s) 97, 190
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoT14I CCWWGG 4 cut(s) 272, 498, 657, 906
EcoT38I GRGCYC 2 cut(s) 99, 192
ErhI CCWWGG 4 cut(s) 272, 498, 657, 906
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 5 cut(s) 139, 148, 188, 276, 406
FaiI YATR 9 cut(s) 137, 146, 156, 186, 274, 404, 539, 707, 780
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FatI CATG 5 cut(s) 135, 144, 184, 272, 402
Fnu4HI GCNGC 7 cut(s) 339, 469, 618, 643, 654, 677, 795
FokI GGATG 2 cut(s) 407, 997
FriOI GRGCYC 2 cut(s) 99, 192
Fsp4HI GCNGC 7 cut(s) 339, 469, 618, 643, 654, 677, 795
FspBI CTAG 3 cut(s) 66, 465, 639
GlaI GCGC 1 cut(s) 652
GluI GCNGC 7 cut(s) 339, 469, 618, 643, 654, 677, 795
GsuI CTGGAG 2 cut(s) 333, 622
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 4 cut(s) 171, 284, 585, 710
HapII CCGG 2 cut(s) 285, 702
HhaI GCGC 1 cut(s) 653
Hin1II CATG 5 cut(s) 139, 148, 188, 276, 406
Hin6I GCGC 1 cut(s) 651
HinP1I GCGC 1 cut(s) 651
HincII GTYRAC 3 cut(s) 109, 745, 991
HindII GTYRAC 3 cut(s) 109, 745, 991
HindIII AAGCTT 2 cut(s) 821, 941
HinfI GANTC 6 cut(s) 30, 48, 203, 305, 522, 809
HpaI GTTAAC 1 cut(s) 109
HpaII CCGG 2 cut(s) 285, 702
HphI GGTGA 3 cut(s) 115, 313, 890
Hpy166II GTNNAC 8 cut(s) 109, 166, 309, 550, 611, 745, 991, 1003
Hpy188I TCNGA 5 cut(s) 10, 29, 44, 81, 814
Hpy188III TCNNGA 3 cut(s) 22, 253, 757
Hpy8I GTNNAC 8 cut(s) 109, 166, 309, 550, 611, 745, 991, 1003
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 8 cut(s) 127, 224, 346, 361, 421, 634, 721, 763
HpyCH4III ACNGT 6 cut(s) 163, 547, 577, 727, 754, 977
HpyCH4IV ACGT 2 cut(s) 613, 1005
HpyCH4V TGCA 4 cut(s) 471, 550, 920, 1003
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 187, 494, 648, 659, 891, 917
HpyF3I CTNAG 1 cut(s) 813
HpySE526I ACGT 2 cut(s) 613, 1005
Hsp92II CATG 5 cut(s) 139, 148, 188, 276, 406
HspAI GCGC 1 cut(s) 651
KspAI GTTAAC 1 cut(s) 109
Kzo9I GATC 8 cut(s) 5, 18, 24, 112, 249, 267, 786, 996
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 403, 493
Lsp1109I GCAGC 7 cut(s) 325, 455, 604, 640, 654, 663, 781
LweI GCATC 4 cut(s) 385, 840, 892, 1019
MaeI CTAG 3 cut(s) 66, 465, 639
MaeII ACGT 2 cut(s) 613, 1005
MaeIII GTNAC 3 cut(s) 839, 878, 971
MalI GATC 8 cut(s) 7, 20, 26, 114, 251, 269, 788, 998
MboI GATC 8 cut(s) 5, 18, 24, 112, 249, 267, 786, 996
MboII GAAGA 5 cut(s) 28, 57, 68, 778, 860
MflI RGATCY 2 cut(s) 5, 267
MhlI GDGCHC 4 cut(s) 99, 192, 552, 1005
MluCI AATT 2 cut(s) 695, 915
MlyI GAGTC 3 cut(s) 197, 314, 818
MmeI TCCRAC 1 cut(s) 646
MnlI CCTC 6 cut(s) 256, 274, 523, 597, 799, 808
MseI TTAA 3 cut(s) 108, 687, 825
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 2 cut(s) 285, 702
MwoI GCNNNNNNNGC 7 cut(s) 71, 187, 494, 648, 659, 891, 917
NcoI CCATGG 1 cut(s) 272
NdeII GATC 8 cut(s) 5, 18, 24, 112, 249, 267, 786, 996
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 5 cut(s) 139, 148, 188, 276, 406
NlaIV GGNNCC 2 cut(s) 257, 361
NmuCI GTSAC 1 cut(s) 878
NspI RCATGY 1 cut(s) 148
PciI ACATGT 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 30, 48, 522
PinAI ACCGGT 1 cut(s) 701
PkrI GCNGC 7 cut(s) 340, 470, 619, 644, 655, 678, 796
PleI GAGTC 3 cut(s) 197, 313, 817
PpsI GAGTC 3 cut(s) 197, 313, 817
Ppu21I YACGTR 1 cut(s) 1006
PscI ACATGT 1 cut(s) 144
Psp124BI GAGCTC 2 cut(s) 99, 192
PspN4I GGNNCC 2 cut(s) 257, 361
PspPI GGNCC 2 cut(s) 170, 584
PsuI RGATCY 2 cut(s) 5, 267
RsaI GTAC 1 cut(s) 956
RsaNI GTAC 1 cut(s) 955
SacI GAGCTC 2 cut(s) 99, 192
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 3 cut(s) 108, 687, 825
SatI GCNGC 7 cut(s) 339, 469, 618, 643, 654, 677, 795
Sau3AI GATC 8 cut(s) 5, 18, 24, 112, 249, 267, 786, 996
Sau96I GGNCC 2 cut(s) 170, 584
SchI GAGTC 3 cut(s) 197, 314, 818
SduI GDGCHC 4 cut(s) 99, 192, 552, 1005
SfaNI GCATC 4 cut(s) 385, 840, 892, 1019
SfcI CTRYAG 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 191, 824
SmoI CTYRAG 2 cut(s) 191, 824
Sse9I AATT 2 cut(s) 695, 915
SspMI CTAG 3 cut(s) 66, 465, 639
SstI GAGCTC 2 cut(s) 99, 192
StyI CCWWGG 4 cut(s) 272, 498, 657, 906
TaaI ACNGT 6 cut(s) 163, 547, 577, 727, 754, 977
TaiI ACGT 2 cut(s) 616, 1008
TaqII GACCGA 1 cut(s) 41
TasI AATT 2 cut(s) 695, 915
TfiI GAWTC 3 cut(s) 30, 48, 522
Tru1I TTAA 3 cut(s) 108, 687, 825
Tru9I TTAA 3 cut(s) 108, 687, 825
TscAI CASTG 6 cut(s) 316, 552, 565, 652, 850, 871
TseFI GTSAC 1 cut(s) 878
TseI GCWGC 7 cut(s) 338, 468, 617, 642, 653, 676, 794
Tsp45I GTSAC 1 cut(s) 878
TspDTI ATGAA 3 cut(s) 109, 286, 862
TspGWI ACGGA 1 cut(s) 704
TspRI CASTG 6 cut(s) 316, 552, 565, 652, 850, 871
Vha464I CTTAAG 1 cut(s) 824
VneI GTGCAC 2 cut(s) 548, 1001
XagI CCTNNNNNAGG 1 cut(s) 497
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 2 cut(s) 353, 409
XspI CTAG 3 cut(s) 66, 465, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.