Rorug01G0420800

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000502
Physical Location & Seq
Forward (+)
52223787 .. 52226246
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0420800.1

Sequence Viewer

Length: 978 bp
ATGGACAAAAACGAGTCCTCTGCTCCTCGCCGGAAGGGAAGGTTCAAGCCCAAATCTCAACCCAGAAAGCCCAAAACCACTGTGCCCACAACTGAGGTTGAACATGCTGAGAAAGAAGAAAGAGAAGCCAAGGCTCTGCTGCGAAAGTTCCAGGAGAAACAGGCTAGACGTGCGCCTAAAGCTGAGAAAAAATCTACTGTGCAAGTAGCATTTGGTCCGGGAGCTGCATCCTCAAGCTCCTTGAGGACATATGGGGTACCGAAGGTAGAAAATCTTGATCAAGGGAGCAGCTTAGGAGTGAAAGGCTCTGACAATGATCAAATTCTGTCACCTTCACCTTTGGCTACCAGTGGAGCTGGATCTGATGCACCTATGGATATTGATATTGCGGATGCATCAATTTCAAATGTCAAGAATCAATACATAGAGATTTGGGATTATGAGAACAGCAAATATCCTACTACTCTTCCGCTGAGGAAGCCCTACTTTGGAGACCCAGACATTCTTAATGAGAAGGAATTTGTTGAGGATGCTGCAAAGGAGTATGATGAGAGTACTATAAATTGTTCTTCAGAACTCGGGCTGCTGGAGCAAAATGCGAAAGAGAAGTTGCTCTTTGTTCAGCTGCCTCCTACTCTACCATTGGTCAAGCGACCTACTAGTGCAAAGGGGAAAGAGAAAGTCGGAAGCTCAGCACCATCAGAGAAGGTAGGTGCTGCAAAGAAGGGCGGTAGTTTGGAAGAGTTATCTGAGGGGTATATGGGGAAGATGCTGGTTTACAAGAGTGGAGCAGTCAAGTTCAAGCTAGGAGATGCACTGTATGATGTTTCACCCGGTTCAGATTGTATATTTGCTCAAGATGTTGCTGCAATCAACACTGCAGCGAGAAAGTGTTGTGTTCTTGGAGAGCTTGGCCAGCGAGTTGTTATAACTCCTGATGTGGATTCCCTACTAGACGCAACGATTGAGTTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

325

Amino Acids

35.17

Weight (kDa)

6.14

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpc4 PF05132 202 - 314 1.6e-25 RNA polymerase III RPC4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 256
AciI CCGC 3 cut(s) 389, 470, 729
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 1 cut(s) 913
AcsI RAATTY 2 cut(s) 321, 518
AcuI CTGAAG 1 cut(s) 555
AfaI GTAC 2 cut(s) 258, 556
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 4 cut(s) 46, 101, 405, 802
AhlI ACTAGT 1 cut(s) 659
AjiI CACGTC 1 cut(s) 170
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 9 cut(s) 182, 224, 237, 291, 356, 625, 690, 805, 910
AluI AGCT 9 cut(s) 182, 224, 237, 291, 356, 625, 690, 805, 910
Alw26I GTCTC 1 cut(s) 486
AlwI GGATC 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 1 cut(s) 913
ApeKI GCWGC 9 cut(s) 139, 224, 288, 533, 583, 625, 716, 866, 881
ApoI RAATTY 2 cut(s) 321, 518
Asp718I GGTACC 1 cut(s) 256
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 2 cut(s) 219, 834
AsuHPI GGTGA 3 cut(s) 321, 327, 822
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 87
BalI TGGCCA 1 cut(s) 915
BanI GGYRCC 1 cut(s) 256
BbvCI CCTCAGC 1 cut(s) 473
BbvI GCAGC 9 cut(s) 126, 211, 300, 520, 570, 612, 703, 853, 893
BccI CCATC 1 cut(s) 706
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 2 cut(s) 277, 316
BcnI CCSGG 2 cut(s) 219, 834
BcoDI GTCTC 1 cut(s) 486
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 4 cut(s) 165, 660, 806, 953
BfmI CTRYAG 1 cut(s) 879
BisI GCNGC 9 cut(s) 140, 225, 289, 534, 584, 626, 717, 867, 882
BlpI GCTNAGC 1 cut(s) 691
BlsI GCNGC 9 cut(s) 141, 226, 290, 535, 585, 627, 718, 868, 883
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 3 cut(s) 152, 219, 834
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 578
BmgBI CACGTC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 3 cut(s) 152, 219, 834
BmsI GCATC 7 cut(s) 236, 355, 382, 404, 520, 759, 802
BpmI CTGGAG 1 cut(s) 608
Bpu10I CCTNAGC 2 cut(s) 292, 473
Bpu1102I GCTNAGC 1 cut(s) 691
BpuEI CTTGAG 3 cut(s) 217, 262, 840
BpuMI CCSGG 2 cut(s) 219, 834
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 3 cut(s) 227, 397, 535
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMII CTCAG 6 cut(s) 84, 99, 174, 464, 705, 741
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 87
BseXI GCAGC 9 cut(s) 126, 211, 300, 520, 570, 612, 703, 853, 893
BshFI GGCC 1 cut(s) 915
BshNI GGYRCC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 3 cut(s) 31, 218, 834
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 1 cut(s) 486
BsnI GGCC 1 cut(s) 915
Bso31I GGTCTC 1 cut(s) 486
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 3 cut(s) 277, 316, 359
Bsp1720I GCTNAGC 1 cut(s) 691
BspACI CCGC 3 cut(s) 389, 470, 729
BspANI GGCC 1 cut(s) 915
BspCNI CTCAG 6 cut(s) 85, 100, 175, 465, 704, 742
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 883
BspPI GGATC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 486
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 277, 316, 359
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 82, 199, 819
Bst6I CTCTTC 2 cut(s) 471, 735
BstC8I GCNNGC 1 cut(s) 917
BstDEI CTNAG 7 cut(s) 93, 108, 183, 292, 473, 691, 750
BstF5I GGATG 3 cut(s) 227, 397, 535
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 3 cut(s) 280, 319, 362
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 3 cut(s) 277, 316, 359
BstMWI GCNNNNNNNGC 5 cut(s) 170, 179, 478, 589, 916
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 150, 217, 832
BstSFI CTRYAG 1 cut(s) 879
BstSLI GKGCMC 1 cut(s) 87
BstV1I GCAGC 9 cut(s) 126, 211, 300, 520, 570, 612, 703, 853, 893
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 1 cut(s) 915
BtrI CACGTC 1 cut(s) 170
BtsCI GGATG 3 cut(s) 227, 397, 535
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 4 cut(s) 78, 355, 815, 876
Cac8I GCNNGC 1 cut(s) 917
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 965
Csp6I GTAC 2 cut(s) 257, 555
CviAII CATG 1 cut(s) 104
CviQI GTAC 2 cut(s) 257, 555
DdeI CTNAG 7 cut(s) 93, 108, 183, 292, 473, 691, 750
DpnI GATC 3 cut(s) 279, 318, 361
DpnII GATC 3 cut(s) 277, 316, 359
EaeI YGGCCR 1 cut(s) 913
Eam1104I CTCTTC 2 cut(s) 471, 735
EarI CTCTTC 2 cut(s) 471, 735
Eco130I CCWWGG 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 107
FalI AAGNNNNNCTT 4 cut(s) 470, 502, 599, 631
FatI CATG 1 cut(s) 103
FauNDI CATATG 1 cut(s) 250
FbaI TGATCA 2 cut(s) 277, 316
Fnu4HI GCNGC 9 cut(s) 140, 225, 289, 534, 584, 626, 717, 867, 882
FokI GGATG 3 cut(s) 214, 404, 542
Fsp4HI GCNGC 9 cut(s) 140, 225, 289, 534, 584, 626, 717, 867, 882
FspBI CTAG 4 cut(s) 165, 660, 806, 953
GlaI GCGC 1 cut(s) 174
GluI GCNGC 9 cut(s) 140, 225, 289, 534, 584, 626, 717, 867, 882
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 1 cut(s) 915
HapII CCGG 3 cut(s) 31, 218, 834
HgaI GACGC 1 cut(s) 965
HhaI GCGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 3 cut(s) 14, 415, 944
HpaII CCGG 3 cut(s) 31, 218, 834
HphI GGTGA 3 cut(s) 321, 327, 822
Hpy166II GTNNAC 1 cut(s) 778
Hpy188I TCNGA 7 cut(s) 310, 364, 574, 686, 703, 751, 841
Hpy188III TCNNGA 4 cut(s) 275, 412, 857, 935
Hpy8I GTNNAC 1 cut(s) 778
HpyAV CCTTC 7 cut(s) 28, 33, 256, 342, 508, 700, 718
HpyCH4III ACNGT 3 cut(s) 82, 199, 819
HpyCH4IV ACGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 179, 478, 589, 916
HpyF3I CTNAG 7 cut(s) 93, 108, 183, 292, 473, 691, 750
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 1 cut(s) 173
KpnI GGTACC 1 cut(s) 260
Ksp22I TGATCA 2 cut(s) 277, 316
Kzo9I GATC 3 cut(s) 277, 316, 359
LmnI GCTCC 7 cut(s) 28, 221, 242, 285, 353, 589, 788
Lsp1109I GCAGC 9 cut(s) 126, 211, 300, 520, 570, 612, 703, 853, 893
LweI GCATC 7 cut(s) 236, 355, 382, 404, 520, 759, 802
MaeI CTAG 4 cut(s) 165, 660, 806, 953
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 327
MalI GATC 3 cut(s) 279, 318, 361
MboI GATC 3 cut(s) 277, 316, 359
MboII GAAGA 5 cut(s) 128, 458, 561, 752, 778
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 915
MluCI AATT 4 cut(s) 321, 399, 518, 562
MluNI TGGCCA 1 cut(s) 915
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 2 cut(s) 664, 951
MnlI CCTC 9 cut(s) 28, 36, 88, 237, 241, 468, 520, 639, 745
Mox20I TGGCCA 1 cut(s) 915
Mph1103I ATGCAT 1 cut(s) 397
MscI TGGCCA 1 cut(s) 915
MseI TTAA 1 cut(s) 507
Msp20I TGGCCA 1 cut(s) 915
MspA1I CMGCKG 2 cut(s) 472, 625
MspI CCGG 3 cut(s) 31, 218, 834
MspR9I CCNGG 3 cut(s) 152, 219, 834
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 5 cut(s) 170, 179, 478, 589, 916
NciI CCSGG 2 cut(s) 219, 834
NdeI CATATG 1 cut(s) 250
NdeII GATC 3 cut(s) 277, 316, 359
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 327
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 1 cut(s) 107
PfeI GAWTC 2 cut(s) 415, 944
PfoI TCCNGGA 2 cut(s) 150, 217
PkrI GCNGC 9 cut(s) 141, 226, 290, 535, 585, 627, 718, 868, 883
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PsiI TTATAA 1 cut(s) 929
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 883
PsuI RGATCY 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 2 cut(s) 258, 556
RsaNI GTAC 2 cut(s) 257, 555
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 9 cut(s) 140, 225, 289, 534, 584, 626, 717, 867, 882
Sau3AI GATC 3 cut(s) 277, 316, 359
Sau96I GGNCC 1 cut(s) 215
ScaI AGTACT 1 cut(s) 556
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 3 cut(s) 152, 219, 834
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 7 cut(s) 236, 355, 382, 404, 520, 759, 802
SfcI CTRYAG 1 cut(s) 879
SinI GGWCC 1 cut(s) 215
SmlI CTYRAG 3 cut(s) 232, 241, 855
SmoI CTYRAG 3 cut(s) 232, 241, 855
SpeI ACTAGT 1 cut(s) 659
Sse9I AATT 4 cut(s) 321, 399, 518, 562
SsiI CCGC 3 cut(s) 389, 470, 729
SspMI CTAG 4 cut(s) 165, 660, 806, 953
StyD4I CCNGG 3 cut(s) 150, 217, 832
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 82, 199, 819
TaiI ACGT 1 cut(s) 172
TasI AATT 4 cut(s) 321, 399, 518, 562
TatI WGTACW 1 cut(s) 554
TfiI GAWTC 2 cut(s) 415, 944
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 4 cut(s) 85, 355, 822, 883
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 9 cut(s) 139, 224, 288, 533, 583, 625, 716, 866, 881
Tsp45I GTSAC 1 cut(s) 327
TspRI CASTG 4 cut(s) 85, 355, 822, 883
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 2 cut(s) 321, 518
XceI RCATGY 1 cut(s) 107
XspI CTAG 4 cut(s) 165, 660, 806, 953
ZrmI AGTACT 1 cut(s) 556
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.