Prupe.5G155800_v2.0.a1

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000502
Physical Location & Seq
Reverse (-)
13917808 .. 13921361
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G155800.2

Sequence Viewer

Length: 1020 bp
ATGGGGAAGATCAAGATCGGAATCAACGGATTTGGAAGGATCGGAAGGTTGGTGGCCAGAGTGGCTCTGCAGAGAGATGATATTGAACTCGTCGCCATTAACGATCCTTTCATCACCGGCGACTACATGGTTTACATGTTCAACTATGACACTGTGCACGGTCGCTGGAAGCATAACGATGTCAAGCTTAGGGACGCAAACACCCTTCTCTTTGGTGACAAGCCCGTCTCTATTTTTGCTGTCAGGAACCCAGATGAGATCCCATGGTCTGGGAGTGGAGCTGAATATGTTGTCGAGTCAACCGGTGTTTTCACCGATAAGGAAAAGGCTGCTGCCCATTTGAAGGGTGGAGCGAAGAAGGTTATCATCTCAGCCCCCAGCAAAGACGCTCCTATGTTTGTTGTGGGTGTCAATGAGAAGGAATACAAGCCAGATCTTAATATTGTTTCCAATGCTAGTTGCACGACCAACTGCCTTGCTCCTCTTGCAAAGGTCATTCATGATAGGTTCGGTATTGTTGAGGGTCTGATGACCACCGTTCACTCCATTACTGCCACCCAAAAGACTGTCGATGGACCTTCTTCTAAGGATTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATTCCCAGCAGTACTGGAGCTGCAAAGGCTGTTGGTAAAGTGCTGCCTGATCTGAACGGAAAATTGACGGGAATGTCTTTCCGTGTTCCTACTGTTGATGTCTCAGTGGTTGACCTTACCGTGAGGCTGGCAAAGTCAGCTACTTATGATGAAGTCAAAGCTGCCATCAAGGAGGAGTCTGAGGGAAAACTGAAGGGAATCTTGGGTTACACTGAAGATGACGTGGTTTCCACTGACTTTGTTGGGGACAGCAGGTCTAGTATTTTTGATGCAAAGGCTGGAATTGCTCTGAATGATAACTTCCACAAGTTGGTCTCATGGTACGACAATGAGTGGGGATACAGCTCTCGTGTTGTCGACTTGATTTCCTACATTGCATCTGTTGATCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010
Pfam Domains
Protein Families
Gp_dh_C Gp_dh_N

Protein Analysis

340

Amino Acids

36.74

Weight (kDa)

6.4

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13440 AT1G13440 AT3G04120
fragaria_vesca FvH4_4g24420 FvH4_5g07640 FvH4_6g52741 FvH4_6g52755
malus_domestica MD06G1148800.v1.1 MD09G1016900.v1.1 MD13G1111500.v1.1 MD16G1111100.v1.1 MD17G1017300.v1.1
prunus_persica Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.1G234000_v2.0.a1 Prupe.3G300600_v2.0.a1 Prupe.5G155800_v2.0.a1 Prupe.5G155800_v2.0.a1
pyrus_communis pycom06g13820 pycom111g01370 pycom13g09680 pycom16g09410
rosa_chinensis RchiOBHm_Chr1g0380411 RchiOBHm_Chr2g0174371 RchiOBHm_Chr2g0174391 RchiOBHm_Chr2g0174401 RchiOBHm_Chr4g0431271 RchiOBHm_Chr7g0190831 RchiOBHm_Chr7g0209601
rosa_laevigata RLG00000003113 RLG00000004459 RLG00000004490 RLG00000022261 RLG00000022262 RLG00000026305
rosa_multiflora Rmu_sc0000033.1_g000020 Rmu_sc0000243.1_g000023 Rmu_sc0002637.1_g000006 Rmu_sc0002637.1_g000007 Rmu_sc0004033.1_g000020 Rmu_sc0004787.1_g000001 Rmu_sc0005371.1_g000004 Rmu_sc0007885.1_g000015 Rmu_sc0019128.1_g000001
rosa_roxburghii Rroxscaffold_2G00078250 Rroxscaffold_2G00078260 Rroxscaffold_3G00249220 Rroxscaffold_3G00264260 Rroxscaffold_4G00279410 Rroxscaffold_5G00372820
rosa_rugosa Rorug01G0420800 Rorug04G0249800 Rorug04G0249900 Rorug06G0507500 Rorug07G0114500.1
rosa_samantha Rh1AG445000 Rh1BG400200 Rh1CG414800 Rh1DG430100 Rh2AG657500 Rh2AG657600 Rh2BG668500 Rh2BG668600 Rh2BG668700 Rh2CG631600 Rh2DG682100 Rh4AG305700 Rh4BG313100 Rh4CG329300 Rh4DG309500 Rh5AG149300 Rh5DG147700 Rh7AG114100 Rh7AG248500 Rh7BG116700 Rh7BG242600 Rh7CG119400 Rh7CG264500 Rh7DG117900 Rh7DG254400
rosa_wichuraiana Rw1G038730 Rw2G053850 Rw2G053860 Rw4G026580 Rw5G013240 Rw7G021060 Rw7G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 224, 697
Acc36I ACCTGC 1 cut(s) 867
AccB7I CCANNNNNTGG 2 cut(s) 269, 934
AccI GTMKAC 1 cut(s) 981
AclWI GGATC 3 cut(s) 47, 98, 253
AcoI YGGCCR 1 cut(s) 54
AcuI CTGAAG 2 cut(s) 836, 858
AfaI GTAC 2 cut(s) 637, 947
AfiI CCNNNNNNNGG 3 cut(s) 269, 343, 934
AflIII ACRYGT 1 cut(s) 135
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 4 cut(s) 86, 142, 343, 619
AhdI GACNNNNNGTC 1 cut(s) 877
AjiI CACGTC 1 cut(s) 847
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
AluBI AGCT 7 cut(s) 187, 281, 608, 644, 764, 785, 969
AluI AGCT 7 cut(s) 187, 281, 608, 644, 764, 785, 969
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 3 cut(s) 232, 730, 943
Alw44I GTGCAC 1 cut(s) 155
AlwI GGATC 3 cut(s) 47, 98, 253
AoxI GGCC 1 cut(s) 54
ApaLI GTGCAC 1 cut(s) 155
ApeKI GCWGC 6 cut(s) 329, 332, 608, 644, 667, 785
AsiGI ACCGGT 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 3 cut(s) 106, 227, 304
AvaII GGWCC 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 56
BauI CACGAG 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 6 cut(s) 316, 319, 595, 631, 654, 772
BccI CCATC 2 cut(s) 566, 797
BciVI GTATCC 1 cut(s) 956
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 3 cut(s) 232, 730, 943
BfaI CTAG 2 cut(s) 456, 882
BfmI CTRYAG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 867
BfuI GTATCC 1 cut(s) 956
BglI GCCNNNNNGGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 433
BisI GCNGC 6 cut(s) 330, 333, 609, 645, 668, 786
BlsI GCNGC 6 cut(s) 331, 334, 610, 646, 669, 787
BmcAI AGTACT 1 cut(s) 637
Bme18I GGWCC 1 cut(s) 575
BmeRI GACNNNNNGTC 1 cut(s) 877
BmgBI CACGTC 1 cut(s) 847
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 248
BmsI GCATC 2 cut(s) 883, 1010
BpmI CTGGAG 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 188
BsaBI GATNNNNATC 2 cut(s) 14, 20
BsaI GGTCTC 1 cut(s) 943
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 343, 934
Bse118I RCCGGY 2 cut(s) 116, 302
Bse1I ACTGG 1 cut(s) 643
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 2 cut(s) 14, 20
BseDI CCNNGG 1 cut(s) 263
BseJI GATNNNNATC 2 cut(s) 14, 20
BseLI CCNNNNNNNGG 3 cut(s) 269, 343, 934
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 3 cut(s) 384, 741, 795
BseNI ACTGG 1 cut(s) 643
BseRI GAGGAG 2 cut(s) 471, 812
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 6 cut(s) 316, 319, 595, 631, 654, 772
BseYI CCCAGC 2 cut(s) 377, 629
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 56
BshTI ACCGGT 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 2 cut(s) 117, 303
BslFI GGGAC 2 cut(s) 206, 884
BslI CCNNNNNNNGG 3 cut(s) 269, 343, 934
BsmAI GTCTC 3 cut(s) 232, 730, 943
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 206, 884
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 943
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 8 cut(s) 9, 15, 39, 103, 258, 433, 673, 1009
Bsp19I CCATGG 1 cut(s) 263
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 3 cut(s) 383, 740, 796
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 248
BspMAI CTGCAG 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 867
BspPI GGATC 3 cut(s) 47, 98, 253
BspQI GCTCTTC 1 cut(s) 598
BspTNI GGTCTC 1 cut(s) 943
BsrDI GCAATG 1 cut(s) 996
BsrFI RCCGGY 2 cut(s) 116, 302
BsrI ACTGG 1 cut(s) 643
BssAI RCCGGY 2 cut(s) 116, 302
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 8 cut(s) 9, 15, 39, 103, 258, 433, 673, 1009
BssSI CACGAG 1 cut(s) 972
BssT1I CCWWGG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 972
Bst4CI ACNGT 6 cut(s) 154, 161, 538, 568, 718, 745
Bst6I CTCTTC 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 6 cut(s) 188, 370, 585, 727, 804, 1017
BstDSI CCRYGG 1 cut(s) 263
BstKTI GATC 8 cut(s) 12, 18, 42, 106, 261, 436, 676, 1012
BstMAI GTCTC 3 cut(s) 232, 730, 943
BstMBI GATC 8 cut(s) 9, 15, 39, 103, 258, 433, 673, 1009
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 5 cut(s) 62, 485, 650, 761, 908
BstNSI RCATGY 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 159
BstV1I GCAGC 6 cut(s) 316, 319, 595, 631, 654, 772
BstX2I RGATCY 2 cut(s) 258, 433
BstYI RGATCY 2 cut(s) 258, 433
BsuI GTATCC 1 cut(s) 956
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 847
BtsIMutI CAGTG 4 cut(s) 150, 735, 834, 855
BveI ACCTGC 1 cut(s) 867
Cac8I GCNNGC 1 cut(s) 753
CciI TCATGA 1 cut(s) 499
Cfr10I RCCGGY 2 cut(s) 116, 302
Cfr13I GGNCC 1 cut(s) 575
CseI GACGC 2 cut(s) 203, 395
Csp6I GTAC 2 cut(s) 636, 946
CspAI ACCGGT 1 cut(s) 302
CspCI CAANNNNNGTGG 2 cut(s) 844, 879
CviAII CATG 6 cut(s) 127, 136, 264, 500, 942, 1013
CviQI GTAC 2 cut(s) 636, 946
DdeI CTNAG 6 cut(s) 188, 370, 585, 727, 804, 1017
DpnI GATC 8 cut(s) 11, 17, 41, 105, 260, 435, 675, 1011
DpnII GATC 8 cut(s) 9, 15, 39, 103, 258, 433, 673, 1009
DrdI GACNNNNNNGTC 2 cut(s) 224, 697
DriI GACNNNNNGTC 1 cut(s) 877
DseDI GACNNNNNNGTC 2 cut(s) 224, 697
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 598
Eam1105I GACNNNNNGTC 1 cut(s) 877
EarI CTCTTC 1 cut(s) 598
Eco130I CCWWGG 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 943
Eco47I GGWCC 1 cut(s) 575
Eco57I CTGAAG 2 cut(s) 836, 858
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 6 cut(s) 130, 139, 267, 503, 945, 1016
FalI AAGNNNNNCTT 4 cut(s) 595, 627, 809, 841
FaqI GGGAC 2 cut(s) 206, 884
FatI CATG 6 cut(s) 126, 135, 263, 499, 941, 1012
FbaI TGATCA 1 cut(s) 1009
FblI GTMKAC 1 cut(s) 981
Fnu4HI GCNGC 6 cut(s) 330, 333, 609, 645, 668, 786
Fsp4HI GCNGC 6 cut(s) 330, 333, 609, 645, 668, 786
FspBI CTAG 2 cut(s) 456, 882
GluI GCNGC 6 cut(s) 330, 333, 609, 645, 668, 786
GsaI CCCAGC 2 cut(s) 381, 633
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 117, 303
HgaI GACGC 2 cut(s) 203, 395
Hin1II CATG 6 cut(s) 130, 139, 267, 503, 945, 1016
HincII GTYRAC 3 cut(s) 300, 736, 982
HindII GTYRAC 3 cut(s) 300, 736, 982
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 4 cut(s) 21, 296, 800, 822
HpaII CCGG 2 cut(s) 117, 303
HphI GGTGA 3 cut(s) 106, 227, 304
Hpy166II GTNNAC 6 cut(s) 133, 157, 300, 541, 736, 982
Hpy188I TCNGA 6 cut(s) 20, 44, 528, 678, 805, 915
Hpy188III TCNNGA 3 cut(s) 13, 244, 500
Hpy8I GTNNAC 6 cut(s) 133, 157, 300, 541, 736, 982
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 8 cut(s) 30, 39, 215, 337, 352, 412, 588, 811
HpyCH4III ACNGT 6 cut(s) 154, 161, 538, 568, 718, 745
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 7 cut(s) 70, 157, 462, 488, 647, 896, 1001
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 485, 650, 761, 908
HpyF3I CTNAG 6 cut(s) 188, 370, 585, 727, 804, 1017
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 6 cut(s) 130, 139, 267, 503, 945, 1016
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 8 cut(s) 9, 15, 39, 103, 258, 433, 673, 1009
LguI GCTCTTC 1 cut(s) 598
LmnI GCTCC 5 cut(s) 278, 350, 394, 484, 641
Lsp1109I GCAGC 6 cut(s) 316, 319, 595, 631, 654, 772
LweI GCATC 2 cut(s) 883, 1010
MaeI CTAG 2 cut(s) 456, 882
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 2 cut(s) 215, 830
MalI GATC 8 cut(s) 11, 17, 41, 105, 260, 435, 675, 1011
MboI GATC 8 cut(s) 9, 15, 39, 103, 258, 433, 673, 1009
MboII GAAGA 5 cut(s) 19, 367, 573, 615, 851
MflI RGATCY 2 cut(s) 258, 433
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 2 cut(s) 686, 906
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 2 cut(s) 305, 809
MnlI CCTC 6 cut(s) 492, 514, 590, 741, 790, 799
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 2 cut(s) 99, 438
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 2 cut(s) 117, 303
MwoI GCNNNNNNNGC 5 cut(s) 62, 485, 650, 761, 908
NcoI CCATGG 1 cut(s) 263
NdeII GATC 8 cut(s) 9, 15, 39, 103, 258, 433, 673, 1009
NlaIII CATG 6 cut(s) 130, 139, 267, 503, 945, 1016
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 1 cut(s) 215
NspI RCATGY 1 cut(s) 139
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 2 cut(s) 21, 822
PflMI CCANNNNNTGG 2 cut(s) 269, 934
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 6 cut(s) 331, 334, 610, 646, 669, 787
PleI GAGTC 2 cut(s) 304, 808
PpsI GAGTC 2 cut(s) 304, 808
PscI ACATGT 1 cut(s) 135
PspFI CCCAGC 2 cut(s) 377, 629
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 575
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 2 cut(s) 258, 433
RsaI GTAC 2 cut(s) 637, 947
RsaNI GTAC 2 cut(s) 636, 946
RseI CAYNNNNRTG 1 cut(s) 177
SalI GTCGAC 1 cut(s) 980
SapI GCTCTTC 1 cut(s) 598
SaqAI TTAA 2 cut(s) 99, 438
SatI GCNGC 6 cut(s) 330, 333, 609, 645, 668, 786
Sau3AI GATC 8 cut(s) 9, 15, 39, 103, 258, 433, 673, 1009
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 2 cut(s) 305, 809
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 2 cut(s) 883, 1010
SfcI CTRYAG 1 cut(s) 68
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 686, 906
SspI AATATT 1 cut(s) 442
SspMI CTAG 2 cut(s) 456, 882
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 6 cut(s) 154, 161, 538, 568, 718, 745
TaiI ACGT 1 cut(s) 849
TaqI TCGA 3 cut(s) 294, 570, 981
TasI AATT 2 cut(s) 686, 906
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 2 cut(s) 21, 822
Tru1I TTAA 2 cut(s) 99, 438
Tru9I TTAA 2 cut(s) 99, 438
TscAI CASTG 4 cut(s) 157, 735, 841, 862
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 6 cut(s) 329, 332, 608, 644, 667, 785
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 4 cut(s) 100, 488, 603, 789
TspGWI ACGGA 3 cut(s) 42, 695, 696
TspRI CASTG 4 cut(s) 157, 735, 841, 862
Van91I CCANNNNNTGG 2 cut(s) 269, 934
VneI GTGCAC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 575
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 981
XspI CTAG 2 cut(s) 456, 882
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.