Rmu_sc0012044.1_g000001

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012044.1
OG0021627
Physical Location & Seq
Reverse (-)
2 .. 446
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012044.1_g000001.1.cds

Sequence Viewer

Length: 361 bp
atgggctataagtgtgtttccatcaatgccagtgatgatattgtttccgtgactgcatcttttctcaaggatgggaaacatatggagaggaatatcagatgcaatatggttgtaggtactgacggtgctggaagtactgtacgtaagctggctggtatagatatgagaggtgaaaaggacttgcagaagcttgtgagtgtccatttcttgagcagagaccttggaaattacttgcacagtgagagacctggcatgctgttttttatcttcaatactgaagctataggggtccttgttgcacatgatctcaagcaaggggaatttgtattgcagatgccattttatccaccccagcaaaacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

6.9

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021627)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000187.1_g000011 Rmu_sc0012044.1_g000001 Rmu_sc0032088.1_g000001
rosa_samantha Rh2AG081900 Rh2DG081000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 3 cut(s) 118, 136, 141
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 3 cut(s) 148, 190, 281
AluI AGCT 3 cut(s) 148, 190, 281
Alw26I GTCTC 2 cut(s) 210, 238
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 289
BccI CCATC 2 cut(s) 29, 65
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 210, 238
BfmI CTRYAG 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 3 cut(s) 65, 89, 324
BpuEI CTTGAG 3 cut(s) 50, 229, 293
BsaAI YACGTR 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 210, 238
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 351
BsmAI GTCTC 2 cut(s) 210, 238
Bso31I GGTCTC 2 cut(s) 210, 238
Bsp143I GATC 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 290
BspTNI GGTCTC 2 cut(s) 210, 238
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 125, 139, 239
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 150, 254
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 210, 238
BstMBI GATC 1 cut(s) 304
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 282
BstSNI TACGTA 1 cut(s) 143
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 37, 244
Cac8I GCNNGC 2 cut(s) 150, 254
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 3 cut(s) 117, 135, 140
CviAII CATG 2 cut(s) 253, 302
CviJI RGCY 5 cut(s) 6, 148, 152, 190, 281
CviKI_1 RGCY 5 cut(s) 6, 148, 152, 190, 281
CviQI GTAC 3 cut(s) 117, 135, 140
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 220
Eco31I GGTCTC 2 cut(s) 210, 238
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 256, 305
FaiI YATR 9 cut(s) 9, 81, 83, 107, 158, 164, 254, 284, 303
FatI CATG 2 cut(s) 252, 301
FauNDI CATATG 1 cut(s) 81
FokI GGATG 1 cut(s) 83
GsaI CCCAGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 256, 305
HindIII AAGCTT 1 cut(s) 188
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 208
HpyCH4III ACNGT 3 cut(s) 125, 139, 239
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 6 cut(s) 56, 102, 184, 235, 299, 331
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 256, 305
Kzo9I GATC 1 cut(s) 304
LpnPI CCDG 6 cut(s) 43, 114, 134, 138, 234, 261
LweI GCATC 3 cut(s) 65, 89, 324
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 259
MluCI AATT 2 cut(s) 226, 320
MnlI CCTC 2 cut(s) 81, 161
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
NdeI CATATG 1 cut(s) 81
NdeII GATC 1 cut(s) 304
NlaIII CATG 2 cut(s) 256, 305
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
RsaI GTAC 3 cut(s) 118, 136, 141
RsaNI GTAC 3 cut(s) 117, 135, 140
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 249
SetI ASST 8 cut(s) 118, 145, 150, 172, 192, 222, 250, 283
SfaNI GCATC 3 cut(s) 65, 89, 324
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 3 cut(s) 65, 208, 308
SmoI CTYRAG 3 cut(s) 65, 208, 308
SnaBI TACGTA 1 cut(s) 143
SphI GCATGC 1 cut(s) 256
Sse9I AATT 2 cut(s) 226, 320
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 3 cut(s) 125, 139, 239
TaiI ACGT 1 cut(s) 145
TasI AATT 2 cut(s) 226, 320
TatI WGTACW 1 cut(s) 134
TscAI CASTG 2 cut(s) 37, 244
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 2 cut(s) 37, 244
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.