Rh2AG081900

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0021627
Physical Location & Seq
Reverse (-)
6893894 .. 6894226
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG081900.1

Sequence Viewer

Length: 333 bp
ATGGGCTATGAGTGTGTTTCCATCAATGTCAGTGATGATATTGTTTCTGTGACTGCATCTTTTCTCAAGGATGGGAAACATATGGAGAGGAATATCATATGCAATATGGTTGTAGGTACTGACGGTGCTGGAAGTACTGTACGTAAGCTGGCTGATATAGATATGAGAGGTGAAAATGACTTGCAGAAGCTTGTGAGTGTCCATTTCTTGAGCAGAGACCTTGGAAATTACTTGCACAGTGAGAGACCTGGCATGCTGTTTTTTATCTTCAATACTGAAGCTATAGGGGTCCTTGTTGCACATGATCTCAAGCAAGGGGAATTTGTATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

110

Amino Acids

12.16

Weight (kDa)

5.19

Isoelectric Point (pI)

14.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 10 - 97 6.8e-09 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021627)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000187.1_g000011 Rmu_sc0012044.1_g000001 Rmu_sc0032088.1_g000001
rosa_samantha Rh2AG081900 Rh2DG081000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 3 cut(s) 118, 136, 141
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 3 cut(s) 148, 190, 281
AluI AGCT 3 cut(s) 148, 190, 281
Alw26I GTCTC 2 cut(s) 210, 238
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 289
BccI CCATC 2 cut(s) 29, 65
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 210, 238
BfmI CTRYAG 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 65
BpuEI CTTGAG 3 cut(s) 50, 229, 293
BsaAI YACGTR 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 210, 238
BsaJI CCNNGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 210, 238
Bso31I GGTCTC 2 cut(s) 210, 238
Bsp143I GATC 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 290
BspTNI GGTCTC 2 cut(s) 210, 238
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 3 cut(s) 125, 139, 239
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 150, 254
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 210, 238
BstMBI GATC 1 cut(s) 304
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 282
BstSNI TACGTA 1 cut(s) 143
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 37, 244
Cac8I GCNNGC 2 cut(s) 150, 254
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 3 cut(s) 117, 135, 140
CviAII CATG 2 cut(s) 253, 302
CviJI RGCY 5 cut(s) 6, 148, 152, 190, 281
CviKI_1 RGCY 5 cut(s) 6, 148, 152, 190, 281
CviQI GTAC 3 cut(s) 117, 135, 140
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 220
Eco31I GGTCTC 2 cut(s) 210, 238
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 256, 305
FatI CATG 2 cut(s) 252, 301
FauNDI CATATG 2 cut(s) 81, 98
FokI GGATG 1 cut(s) 83
Hin1II CATG 2 cut(s) 256, 305
HindIII AAGCTT 1 cut(s) 188
HphI GGTGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 208
HpyCH4III ACNGT 3 cut(s) 125, 139, 239
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 5 cut(s) 56, 102, 184, 235, 299
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 256, 305
Kzo9I GATC 1 cut(s) 304
LpnPI CCDG 4 cut(s) 114, 134, 234, 261
LweI GCATC 1 cut(s) 65
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 259
MluCI AATT 2 cut(s) 226, 320
MnlI CCTC 2 cut(s) 81, 161
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
NdeI CATATG 2 cut(s) 81, 98
NdeII GATC 1 cut(s) 304
NlaIII CATG 2 cut(s) 256, 305
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
RsaI GTAC 3 cut(s) 118, 136, 141
RsaNI GTAC 3 cut(s) 117, 135, 140
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 289
ScaI AGTACT 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 249
SetI ASST 8 cut(s) 118, 145, 150, 172, 192, 222, 250, 283
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 3 cut(s) 65, 208, 308
SmoI CTYRAG 3 cut(s) 65, 208, 308
SnaBI TACGTA 1 cut(s) 143
SphI GCATGC 1 cut(s) 256
Sse9I AATT 2 cut(s) 226, 320
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 3 cut(s) 125, 139, 239
TaiI ACGT 1 cut(s) 145
TasI AATT 2 cut(s) 226, 320
TatI WGTACW 1 cut(s) 134
TscAI CASTG 2 cut(s) 37, 244
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 2 cut(s) 37, 244
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 256
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.