Rh2DG081000

FAD binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0021627
Physical Location & Seq
Reverse (-)
6321436 .. 6321768
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG081000.1

Sequence Viewer

Length: 333 bp
ATGGGCTATGAGTGTGTTTCCATCAATGCCAGTGATGATATTGTTTCTGTGACTGCATCTTTTCTCAAGGATGGGAAACATATGGAGAGGAATATCATATGCAATATGGTTGTAGGTACTGACGGTGCTGGAAGTATTGTACGTAAGCTGGTTGATATAGATATGAGAGGTGAAAATGACTTGCAGAAGCTTGTGAGTGTCCATTTCTTGAGCAGAGACCTTGGAAATTACTTGCACAGTGAGAGACCTAGCATGCTGTTTTTTATCTTCAATACTGAAGCTATAGGGGTCCTTGTTGCACACGATCTCAAGCAAGGGGAATTTGTATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

5.19

Isoelectric Point (pI)

14.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 4 - 97 2.2e-09 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021627)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000187.1_g000011 Rmu_sc0012044.1_g000001 Rmu_sc0032088.1_g000001
rosa_samantha Rh2AG081900 Rh2DG081000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 118, 141
AgsI TTSAA 1 cut(s) 271
AluBI AGCT 3 cut(s) 148, 190, 281
AluI AGCT 3 cut(s) 148, 190, 281
Alw26I GTCTC 2 cut(s) 210, 238
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 289
BccI CCATC 2 cut(s) 29, 65
BcoDI GTCTC 2 cut(s) 210, 238
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 290
BmsI GCATC 1 cut(s) 65
BpuEI CTTGAG 3 cut(s) 50, 229, 293
BsaAI YACGTR 1 cut(s) 143
BsaI GGTCTC 2 cut(s) 210, 238
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 210, 238
Bso31I GGTCTC 2 cut(s) 210, 238
Bsp143I GATC 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 290
BspTNI GGTCTC 2 cut(s) 210, 238
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 125, 239
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 254
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 210, 238
BstMBI GATC 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 282
BstSNI TACGTA 1 cut(s) 143
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 37, 244
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 2 cut(s) 117, 140
CviAII CATG 1 cut(s) 253
CviJI RGCY 4 cut(s) 6, 148, 190, 281
CviKI_1 RGCY 4 cut(s) 6, 148, 190, 281
CviQI GTAC 2 cut(s) 117, 140
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 220
Eco31I GGTCTC 2 cut(s) 210, 238
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 256
FatI CATG 1 cut(s) 252
FauNDI CATATG 2 cut(s) 81, 98
FokI GGATG 1 cut(s) 83
FspBI CTAG 1 cut(s) 249
Hin1II CATG 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 188
HphI GGTGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 125, 239
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 5 cut(s) 56, 102, 184, 235, 299
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 304
LpnPI CCDG 3 cut(s) 43, 114, 134
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 259
MluCI AATT 2 cut(s) 226, 320
MnlI CCTC 2 cut(s) 81, 161
NdeI CATATG 2 cut(s) 81, 98
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 118, 141
RsaNI GTAC 2 cut(s) 117, 140
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 1 cut(s) 289
SetI ASST 8 cut(s) 118, 145, 150, 172, 192, 222, 250, 283
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 3 cut(s) 65, 208, 308
SmoI CTYRAG 3 cut(s) 65, 208, 308
SnaBI TACGTA 1 cut(s) 143
SphI GCATGC 1 cut(s) 256
Sse9I AATT 2 cut(s) 226, 320
SspMI CTAG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 125, 239
TaiI ACGT 1 cut(s) 145
TasI AATT 2 cut(s) 226, 320
TscAI CASTG 2 cut(s) 37, 244
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 2 cut(s) 37, 244
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 320
XceI RCATGY 1 cut(s) 256
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.