Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012099.1

Orthogroup ID

OG0012751

Physical Location & Seq

Genomic Coordinates Forward (+)

22114 .. 30796

Gene Structure 8683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012099.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3237 bp

atgccctccttttgtttcttcaacttggtcatcctcgtctgctcattgcctcctgctttgggtgccgacccctacgtgttctatgattggaccgtctcctacatcactgctgctccacttggagttaagcaaaaggttattgggattaatggagagtttccaggaccgttgcttaatgtgactacaaattggaatgttgttatcaatgtgaagaatgacctggatgagccattgcttctcacgtggaatggaatacagcataggaaaaactgttggcaagatggtgtttcggggactaattgtccaattcaggctggttggaattggacatatgactttcaggttaaagatcagatagggagtttcttttatttcccctccctaagcttccagagagctgcaggtggatatgggggaatcatcataaataacagagctattattccgctaccttttgcggtgccagatgcagatgttactctctttattacagactggtatacaaagagtcataaggagctacggaaagatgttgaaagtggaactaacctaggaattcctgacggcatcctcatcaacggattaggtccctttcgctttgacgaggcaattcttcctgacggctttcctttccttacaataaatgttgaaccaggaaagacataccgcttccgggtgcacaacgttggcatctcaactagcttgaatttcaggatacaaaatcataacttactccttgtggagactgaaggatcgtacacggttcagcagaactatgctaatatggatatccatgttggtcagtcgttttcgttcttggttacaatggatcagaatgccagcagtgattactacgttgttgccagccctcgttttgtgaattcatcttcatgggctaaagcgactggagttgccatcttacactactccaattctcagggacctgcatcaggtcctctccctgatcctcctaatgatttcgacacatatttctcaatgaatcaagcaagatctataaggtggaatgtctctgctggtgctgctcgtccaaacccacaaggttcttttaaatatggtgaaattaccgttacagatttctacgtaatcctaaacagacctgcagagcttataaatgggaagtggcgcacaaccctcaatggtatttcatatttcacaccttcgacaccgcttaagctcgcccagcaattcaacatttcaggagtttacaagcttgactttccaaataaactgatgaacagaccggcgaaacttgacacatctttaataaatggtactttcaaaggtttcatggaaatcatctttcagaacaatgataccactgttcagaactaccatatggatggctatgcattttttgtcgtgggtatggattttggagtgtggacagagaatagcagaggcacttacaacaaatgggatggcgttgctcgctgcactacacaggtctttccgggagcttggacagccatattgatttctcttgatagcgccggcatttggaaccttcgtgcagagaatctggactcatggtatctaggccaagaactttatgtcagcgttgttaatcctgagagtgatggatctgaagctggtttgcctgataatgccatttactgtggagtactttcctctttacagaaagaccaagctcagcgagtcaagttttccagttcaccttcaatgtcctgttcgagcacaacaattttggttctattactcgtagcatttggtgctttcattggggtagtattatattcactcttatcattcacgttcttgagcttggtgccaatccagtcagctcctgaggcagcactcataacccagattcctggattcaatggcactcttccttcaaagcaccgttctgggtatgtgacaattgatgagagtcatgggaggaacctgttttactattttgtggaatcggagaggaagccgtcggaggatccggttgtgctgtggctgaatggtggacctggttgctccagttttgatggctttgtttatgagcatgggccattcaattttgaagcagcaaacaccaagggaggtctgcccaaattgcaccttaatccatacagctggtcaaaggtttccaacattttatatttggattctcctgctggtgttgggctgtcttactccaaaaacaaaagtgactatattactggtgatctaaagactgcatctgatagccacacatttctcctcaagtggtttgaactttacccagagttcctctccaacccgtttttcatttcgggagagtcatatgctggtgtctacgtgccaacacttgcttttgaagtggccaaaggaattgatgctggtacaaagcccattatgaacttcaaggggtatcttgtgggaaatggagtcacggatgaggaaatcgatgggaatgcccttgttccatttgctcatgggatgggacttatatcagatgatttatttgaggaggttatcaaggagtgcaatggaaactactatcagccgaatagtgatacttgtgcgaacaaccttgaaaaagttgacaacgccatagaaggcttgaacatttatgacattctagaaccatgctatcacagcacagattctaagaaaatttcaaccgtaaccagtaacttaccatctagctttcgaaagttgggtgaaactgaaaggcctcttgctgtgagaaaaaggatgtttggtcgcgcatggcctcttagagctcctgtgagagctggacttgttccaacttggccgcagcttatgaatagtgaggaagttccatgcactgatgatgaggttgcaactgcatggttgaacaatgcagcagttaggaaggcaatccatgcagaagatgaaagcgtgattcctagttgggaattatgtacagacaacattcgtttttaccatgatgctgggagtatgatccagtaccacaagaatctgacttcgaagggataccgtgcgcttatatatagtggtgatcatgatctgtgtgttccattcaccgggagtgaagcatggactagatcagttggttacaagattgtggatgaatggaggccatggatttcccagggacaaattgctgggtatacacaaggatatgaaaacaacctcacgtttctaaccataaagggagctggtcatacggttccagaatacaaaccccaagaggcattagatttgtatagccgattcttggctggacaaccactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

1078

Amino Acids

119.69

Weight (kDa)

5.25

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48450 AT5G48450
fragaria_vesca	FvH4_2g17700 FvH4_2g17700
malus_domestica	MD05G1158300.v1.1
prunus_persica	Prupe.8G189700_v2.0.a1 Prupe.8G189700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0282691
rosa_laevigata	RLG00000012875
rosa_multiflora	Rmu_sc0003070.1_g000007 Rmu_sc0012099.1_g000005
rosa_roxburghii	Rroxscaffold_7G00186120
rosa_rugosa	Rorug06G0148600
rosa_samantha	Rh6AG262000 Rh6BG265100 Rh6CG264200 Rh6DG256500
rosa_wichuraiana	Rw6G022650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1130
AarI	CACCTGC	1 cut(s)	392
Acc36I	ACCTGC	3 cut(s)	392, 952, 1126
AccB1I	GGYRCC	3 cut(s)	62, 460, 1807
AccI	GTMKAC	3 cut(s)	500, 2307, 3110
AccII	CGCG	1 cut(s)	2721
AciI	CCGC	5 cut(s)	446, 458, 667, 1187, 2771
AclI	AACGTT	1 cut(s)	684
AclWI	GGATC	7 cut(s)	760, 837, 959, 1609, 1964, 1977, 2935
AcoI	YGGCCR	2 cut(s)	2334, 2768
AcsI	RAATTY	4 cut(s)	555, 706, 880, 2628
AcuI	CTGAAG	2 cut(s)	768, 1626
AcvI	CACGTG	1 cut(s)	243
AfaI	GTAC	6 cut(s)	758, 1294, 1644, 2356, 2902, 2948
AfiI	CCNNNNNNNGG	6 cut(s)	59, 673, 950, 1518, 3023, 3217
AflII	CTTAAG	1 cut(s)	1190
AflIII	ACRYGT	1 cut(s)	75
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	6 cut(s)	160, 219, 652, 1852, 1999, 3090
AjuI	GAANNNNNNNTTGG	2 cut(s)	2261, 2293
Alw21I	GWGCWC	3 cut(s)	681, 1718, 2740
Alw26I	GTCTC	3 cut(s)	100, 737, 1033
Alw44I	GTGCAC	1 cut(s)	677
AlwI	GGATC	7 cut(s)	760, 837, 959, 1609, 1964, 1977, 2935
AlwNI	CAGNNNCTG	1 cut(s)	1826
AoxI	GGCC	7 cut(s)	1558, 2039, 2334, 2687, 2726, 2768, 3077
ApaLI	GTGCAC	1 cut(s)	677
ApeKI	GCWGC	8 cut(s)	110, 398, 1040, 1452, 1832, 2057, 2773, 2840
ApoI	RAATTY	4 cut(s)	555, 706, 880, 2628
AseI	ATTAAT	1 cut(s)	147
AspA2I	CCTAGG	1 cut(s)	550
AspLEI	GCGC	4 cut(s)	1146, 1511, 2723, 2983
AspS9I	GGNCC	7 cut(s)	90, 164, 587, 941, 953, 1997, 2039
AsuC2I	CCSGG	3 cut(s)	674, 1473, 3025
AsuHPI	GGTGA	6 cut(s)	1088, 1686, 2207, 2687, 3008, 3013
AsuII	TTCGAA	2 cut(s)	2665, 2966
AvaII	GGWCC	6 cut(s)	90, 164, 587, 941, 953, 1997
AvrII	CCTAGG	1 cut(s)	550
AxyI	CCTNAGG	1 cut(s)	1827
BaeGI	GKGCMC	1 cut(s)	681
BaeI	ACNNNNGTAYC	2 cut(s)	1326, 1359
BalI	TGGCCA	1 cut(s)	2336
BamHI	GGATCC	1 cut(s)	1969
BanI	GGYRCC	3 cut(s)	62, 460, 1807
BanII	GRGCYC	1 cut(s)	2740
BbrPI	CACGTG	1 cut(s)	243
Bbv12I	GWGCWC	3 cut(s)	681, 1718, 2740
BbvI	GCAGC	8 cut(s)	97, 385, 1027, 1439, 1844, 2069, 2785, 2852
BccI	CCATC	9 cut(s)	275, 923, 1355, 1433, 1592, 2012, 2414, 2446, 2662
BceAI	ACGGC	3 cut(s)	580, 637, 1945
BcgI	CGANNNNNNTGC	2 cut(s)	2408, 2442
BciT130I	CCWGG	6 cut(s)	162, 221, 654, 1854, 2001, 3092
BciVI	GTATCC	2 cut(s)	708, 2966
BclI	TGATCA	1 cut(s)	2998
BcnI	CCSGG	3 cut(s)	674, 1473, 3025
BcoDI	GTCTC	3 cut(s)	100, 737, 1033
BfaI	CTAG	8 cut(s)	551, 699, 1556, 2594, 2658, 2886, 3042, 3235
BfmI	CTRYAG	2 cut(s)	399, 1119
BfoI	RGCGCY	1 cut(s)	1512
BfrI	CTTAAG	1 cut(s)	1190
BfuAI	ACCTGC	3 cut(s)	392, 952, 1126
BfuI	GTATCC	2 cut(s)	708, 2966
BglII	AGATCT	1 cut(s)	1010
BisI	GCNGC	9 cut(s)	111, 399, 1041, 1453, 1833, 2058, 2771, 2774, 2841
BlnI	CCTAGG	1 cut(s)	550
BlpI	GCTNAGC	1 cut(s)	1671
BlsI	GCNGC	9 cut(s)	112, 400, 1042, 1454, 1834, 2059, 2772, 2775, 2842
BmcAI	AGTACT	1 cut(s)	1644
Bme1390I	CCNGG	9 cut(s)	162, 221, 654, 674, 1473, 1854, 2001, 3025, 3092
Bme18I	GGWCC	6 cut(s)	90, 164, 587, 941, 953, 1997
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmgT120I	GGNCC	7 cut(s)	90, 164, 587, 941, 953, 1997, 2039
BmiI	GGNNCC	9 cut(s)	64, 462, 589, 942, 1523, 1809, 1925, 1971, 3171
BmrFI	CCNGG	9 cut(s)	162, 221, 654, 674, 1473, 1854, 2001, 3025, 3092
BmsI	GCATC	7 cut(s)	457, 576, 699, 956, 2219, 2338, 2917
BplI	GAGNNNNNCTC	2 cut(s)	2249, 2281
BpmI	CTGGAG	2 cut(s)	927, 1993
Bpu10I	CCTNAGC	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	1671
Bpu14I	TTCGAA	2 cut(s)	2665, 2966
BpuEI	CTTGAG	2 cut(s)	1819, 2219
BpuMI	CCSGG	3 cut(s)	674, 1473, 3025
Bsa29I	ATCGAT	1 cut(s)	2418
BsaAI	YACGTR	4 cut(s)	76, 243, 1102, 2311
BsaBI	GATNNNNATC	1 cut(s)	3003
BsaJI	CCNNGG	5 cut(s)	550, 2067, 3080, 3090, 3091
BsaWI	WCCGGW	1 cut(s)	1972
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 673, 950, 1518, 3023, 3217
Bse118I	RCCGGY	2 cut(s)	1261, 1511
Bse1I	ACTGG	8 cut(s)	500, 910, 1689, 1816, 2010, 2197, 2643, 2944
Bse21I	CCTNAGG	1 cut(s)	1827
Bse3DI	GCAATG	3 cut(s)	44, 230, 2506
Bse8I	GATNNNNATC	1 cut(s)	3003
BseBI	CCWGG	6 cut(s)	162, 221, 654, 1854, 2001, 3092
BseCI	ATCGAT	1 cut(s)	2418
BseDI	CCNNGG	5 cut(s)	550, 2067, 3080, 3090, 3091
BseGI	GGATG	9 cut(s)	30, 229, 567, 1366, 1444, 2413, 2457, 2715, 3073
BseJI	GATNNNNATC	1 cut(s)	3003
BseLI	CCNNNNNNNGG	6 cut(s)	59, 673, 950, 1518, 3023, 3217
BseMI	GCAATG	3 cut(s)	44, 230, 2506
BseMII	CTCAG	4 cut(s)	950, 1581, 1685, 1818
BseNI	ACTGG	8 cut(s)	500, 910, 1689, 1816, 2010, 2197, 2643, 2944
BseRI	GAGGAG	2 cut(s)	2222, 2495
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	8 cut(s)	97, 385, 1027, 1439, 1844, 2069, 2785, 2852
BseYI	CCCAGC	3 cut(s)	1200, 2930, 3104
BsgI	GTGCAG	2 cut(s)	1438, 1551
Bsh1236I	CGCG	1 cut(s)	2721
BshFI	GGCC	7 cut(s)	1560, 2041, 2336, 2689, 2728, 2770, 3079
BshNI	GGYRCC	3 cut(s)	62, 460, 1807
BshVI	ATCGAT	1 cut(s)	2418
BsiHKAI	GWGCWC	3 cut(s)	681, 1718, 2740
BsiSI	CCGG	6 cut(s)	673, 1262, 1472, 1512, 1973, 3024
BslFI	GGGAC	5 cut(s)	307, 573, 954, 2469, 3108
BslI	CCNNNNNNNGG	6 cut(s)	59, 673, 950, 1518, 3023, 3217
BsmAI	GTCTC	3 cut(s)	100, 737, 1033
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	5 cut(s)	307, 573, 954, 2469, 3108
BsmI	GAATGC	2 cut(s)	841, 2431
BsnI	GGCC	7 cut(s)	1560, 2041, 2336, 2689, 2728, 2770, 3079
Bsp119I	TTCGAA	2 cut(s)	2665, 2966
Bsp1286I	GDGCHC	3 cut(s)	681, 1718, 2740
Bsp1407I	TGTACA	1 cut(s)	2900
Bsp1720I	GCTNAGC	1 cut(s)	1671
Bsp19I	CCATGG	1 cut(s)	3080
BspACI	CCGC	5 cut(s)	446, 458, 667, 1187, 2771
BspANI	GGCC	7 cut(s)	1560, 2041, 2336, 2689, 2728, 2770, 3079
BspCNI	CTCAG	4 cut(s)	949, 1582, 1684, 1819
BspDI	ATCGAT	1 cut(s)	2418
BspFNI	CGCG	1 cut(s)	2721
BspHI	TCATGA	1 cut(s)	3001
BspLI	GGNNCC	9 cut(s)	64, 462, 589, 942, 1523, 1809, 1925, 1971, 3171
BspMAI	CTGCAG	2 cut(s)	403, 1123
BspMI	ACCTGC	3 cut(s)	392, 952, 1126
BspPI	GGATC	7 cut(s)	760, 837, 959, 1609, 1964, 1977, 2935
BspT104I	TTCGAA	2 cut(s)	2665, 2966
BspT107I	GGYRCC	3 cut(s)	62, 460, 1807
BspTI	CTTAAG	1 cut(s)	1190
BsrDI	GCAATG	3 cut(s)	44, 230, 2506
BsrFI	RCCGGY	2 cut(s)	1261, 1511
BsrGI	TGTACA	1 cut(s)	2900
BsrI	ACTGG	8 cut(s)	500, 910, 1689, 1816, 2010, 2197, 2643, 2944
BssAI	RCCGGY	2 cut(s)	1261, 1511
BssECI	CCNNGG	5 cut(s)	550, 2067, 3080, 3090, 3091
BssNAI	GTATAC	2 cut(s)	501, 3111
BssT1I	CCWWGG	3 cut(s)	550, 2067, 3080
Bst1107I	GTATAC	2 cut(s)	501, 3111
Bst2UI	CCWGG	6 cut(s)	162, 221, 654, 1854, 2001, 3092
Bst6I	CTCTTC	1 cut(s)	1875
BstAFI	CTTAAG	1 cut(s)	1190
BstAPI	GCANNNNNTGC	2 cut(s)	1751, 2861
BstAUI	TGTACA	1 cut(s)	2900
BstBAI	YACGTR	4 cut(s)	76, 243, 1102, 2311
BstBI	TTCGAA	2 cut(s)	2665, 2966
BstC8I	GCNNGC	5 cut(s)	841, 865, 1197, 1450, 1513
BstDEI	CTNAG	7 cut(s)	383, 936, 1590, 1671, 1827, 2622, 2732
BstDSI	CCRYGG	1 cut(s)	3080
BstENI	CCTNNNNNAGG	1 cut(s)	948
BstF5I	GGATG	9 cut(s)	30, 229, 567, 1366, 1444, 2413, 2457, 2715, 3073
BstFNI	CGCG	1 cut(s)	2721
BstH2I	RGCGCY	1 cut(s)	1512
BstHHI	GCGC	4 cut(s)	1146, 1511, 2723, 2983
BstMAI	GTCTC	3 cut(s)	100, 737, 1033
BstNI	CCWGG	6 cut(s)	162, 221, 654, 1854, 2001, 3092
BstSCI	CCNGG	9 cut(s)	160, 219, 652, 672, 1471, 1852, 1999, 3023, 3090
BstSFI	CTRYAG	2 cut(s)	399, 1119
BstSLI	GKGCMC	1 cut(s)	681
BstSNI	TACGTA	1 cut(s)	1102
BstUI	CGCG	1 cut(s)	2721
BstV1I	GCAGC	8 cut(s)	97, 385, 1027, 1439, 1844, 2069, 2785, 2852
BstX2I	RGATCY	3 cut(s)	1010, 1601, 1969
BstXI	CCANNNNNNTGG	4 cut(s)	1361, 1853, 2106, 2930
BstYI	RGATCY	3 cut(s)	1010, 1601, 1969
BstZ17I	GTATAC	2 cut(s)	501, 3111
Bsu15I	ATCGAT	1 cut(s)	2418
Bsu36I	CCTNAGG	1 cut(s)	1827
BsuI	GTATCC	2 cut(s)	708, 2966
BsuRI	GGCC	7 cut(s)	1560, 2041, 2336, 2689, 2728, 2770, 3079
BsuTUI	ATCGAT	1 cut(s)	2418
BtgI	CCRYGG	1 cut(s)	3080
BtsCI	GGATG	9 cut(s)	30, 229, 567, 1366, 1444, 2413, 2457, 2715, 3073
BtsI	GCAGTG	2 cut(s)	105, 850
BtsIMutI	CAGTG	4 cut(s)	105, 850, 1338, 2802
BveI	ACCTGC	3 cut(s)	392, 952, 1126
Cac8I	GCNNGC	5 cut(s)	841, 865, 1197, 1450, 1513
CaiI	CAGNNNCTG	1 cut(s)	1826
CciI	TCATGA	1 cut(s)	3001
CfoI	GCGC	4 cut(s)	1146, 1511, 2723, 2983
Cfr10I	RCCGGY	2 cut(s)	1261, 1511
Cfr13I	GGNCC	7 cut(s)	90, 164, 587, 941, 953, 1997, 2039
ClaI	ATCGAT	1 cut(s)	2418
CsiI	ACCWGGT	1 cut(s)	1999
Csp6I	GTAC	6 cut(s)	757, 1293, 1643, 2355, 2901, 2947
CviQI	GTAC	6 cut(s)	757, 1293, 1643, 2355, 2901, 2947
DdeI	CTNAG	7 cut(s)	383, 936, 1590, 1671, 1827, 2622, 2732
DraI	TTTAAA	1 cut(s)	1069
DriI	GACNNNNNGTC	1 cut(s)	300
EaeI	YGGCCR	2 cut(s)	2334, 2768
Eam1104I	CTCTTC	1 cut(s)	1875
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	1875
Ecl136II	GAGCTC	1 cut(s)	2738
Eco105I	TACGTA	1 cut(s)	1102
Eco130I	CCWWGG	3 cut(s)	550, 2067, 3080
Eco147I	AGGCCT	1 cut(s)	2689
Eco24I	GRGCYC	1 cut(s)	2740
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	6 cut(s)	90, 164, 587, 941, 953, 1997
Eco53kI	GAGCTC	1 cut(s)	2738
Eco57I	CTGAAG	2 cut(s)	768, 1626
Eco72I	CACGTG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	1827
EcoICRI	GAGCTC	1 cut(s)	2738
EcoNI	CCTNNNNNAGG	1 cut(s)	948
EcoO109I	RGGNCCY	3 cut(s)	587, 941, 953
EcoRI	GAATTC	2 cut(s)	555, 880
EcoRII	CCWGG	6 cut(s)	160, 219, 652, 1852, 1999, 3090
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	3 cut(s)	550, 2067, 3080
EcoT22I	ATGCAT	1 cut(s)	1372
EcoT38I	GRGCYC	1 cut(s)	2740
ErhI	CCWWGG	3 cut(s)	550, 2067, 3080
Esp3I	CGTCTC	1 cut(s)	100
FalI	AAGNNNNNCTT	2 cut(s)	1220, 1252
FaqI	GGGAC	5 cut(s)	307, 573, 954, 2469, 3108
FauNDI	CATATG	3 cut(s)	331, 1356, 2296
FbaI	TGATCA	1 cut(s)	2998
FblI	GTMKAC	3 cut(s)	500, 2307, 3110
Fnu4HI	GCNGC	9 cut(s)	111, 399, 1041, 1453, 1833, 2058, 2771, 2774, 2841
FokI	GGATG	9 cut(s)	17, 236, 554, 1373, 1451, 2420, 2464, 2722, 3080
FriOI	GRGCYC	1 cut(s)	2740
Fsp4HI	GCNGC	9 cut(s)	111, 399, 1041, 1453, 1833, 2058, 2771, 2774, 2841
FspBI	CTAG	8 cut(s)	551, 699, 1556, 2594, 2658, 2886, 3042, 3235
GlaI	GCGC	4 cut(s)	1145, 1510, 2722, 2982
GluI	GCNGC	9 cut(s)	111, 399, 1041, 1453, 1833, 2058, 2771, 2774, 2841
GsaI	CCCAGC	3 cut(s)	1204, 2934, 3108
GsuI	CTGGAG	2 cut(s)	927, 1993
HaeII	RGCGCY	1 cut(s)	1512
HaeIII	GGCC	7 cut(s)	1560, 2041, 2336, 2689, 2728, 2770, 3079
HapII	CCGG	6 cut(s)	673, 1262, 1472, 1512, 1973, 3024
HhaI	GCGC	4 cut(s)	1146, 1511, 2723, 2983
Hin6I	GCGC	4 cut(s)	1144, 1509, 2721, 2981
HinP1I	GCGC	4 cut(s)	1144, 1509, 2721, 2981
HincII	GTYRAC	1 cut(s)	2557
HindII	GTYRAC	1 cut(s)	2557
HindIII	AAGCTT	2 cut(s)	385, 1229
HpaII	CCGG	6 cut(s)	673, 1262, 1472, 1512, 1973, 3024
HphI	GGTGA	6 cut(s)	1088, 1686, 2207, 2687, 3008, 3013
Hpy99I	CGWCG	1 cut(s)	1966
HpyAV	CCTTC	8 cut(s)	743, 1188, 1535, 1707, 1884, 2564, 2845, 2962
HpyCH4IV	ACGT	8 cut(s)	75, 242, 684, 855, 1101, 1793, 2310, 3137
HpyF3I	CTNAG	7 cut(s)	383, 936, 1590, 1671, 1827, 2622, 2732
HpySE526I	ACGT	8 cut(s)	75, 242, 684, 855, 1101, 1793, 2310, 3137
HspAI	GCGC	4 cut(s)	1144, 1509, 2721, 2981
KroI	GCCGGC	1 cut(s)	1511
KroNI	GCCGGC	1 cut(s)	1513
Ksp22I	TGATCA	1 cut(s)	2998
LmnI	GCTCC	7 cut(s)	118, 517, 1475, 1828, 2012, 2743, 3155
Lsp1109I	GCAGC	8 cut(s)	97, 385, 1027, 1439, 1844, 2069, 2785, 2852
LweI	GCATC	7 cut(s)	457, 576, 699, 956, 2219, 2338, 2917
MabI	ACCWGGT	1 cut(s)	1999
MaeI	CTAG	8 cut(s)	551, 699, 1556, 2594, 2658, 2886, 3042, 3235
MaeII	ACGT	8 cut(s)	75, 242, 684, 855, 1101, 1793, 2310, 3137
MboII	GAAGA	6 cut(s)	10, 223, 605, 879, 1862, 2879
MfeI	CAATTG	1 cut(s)	1902
MflI	RGATCY	3 cut(s)	1010, 1601, 1969
MhlI	GDGCHC	3 cut(s)	681, 1718, 2740
MlsI	TGGCCA	1 cut(s)	2336
MluNI	TGGCCA	1 cut(s)	2336
MlyI	GAGTC	6 cut(s)	517, 1538, 1686, 1921, 2300, 2409
MmeI	TCCRAC	5 cut(s)	299, 1944, 2145, 2292, 2786
Mox20I	TGGCCA	1 cut(s)	2336
Mph1103I	ATGCAT	1 cut(s)	1372
MroNI	GCCGGC	1 cut(s)	1511
MscI	TGGCCA	1 cut(s)	2336
MseI	TTAA	9 cut(s)	126, 147, 174, 345, 1068, 1191, 1283, 1584, 2094
MslI	CAYNNNNRTG	2 cut(s)	889, 1359
Msp20I	TGGCCA	1 cut(s)	2336
MspA1I	CMGCKG	1 cut(s)	2106
MspCI	CTTAAG	1 cut(s)	1190
MspI	CCGG	6 cut(s)	673, 1262, 1472, 1512, 1973, 3024
MspR9I	CCNGG	9 cut(s)	162, 221, 654, 674, 1473, 1854, 2001, 3025, 3092
MunI	CAATTG	1 cut(s)	1902
Mva1269I	GAATGC	2 cut(s)	841, 2431
MvaI	CCWGG	6 cut(s)	162, 221, 654, 1854, 2001, 3092
MvnI	CGCG	1 cut(s)	2721
NaeI	GCCGGC	1 cut(s)	1513
NciI	CCSGG	3 cut(s)	674, 1473, 3025
NcoI	CCATGG	1 cut(s)	3080
NdeI	CATATG	3 cut(s)	331, 1356, 2296
NgoMIV	GCCGGC	1 cut(s)	1511
NlaIV	GGNNCC	9 cut(s)	64, 462, 589, 942, 1523, 1809, 1925, 1971, 3171
NmuCI	GTSAC	4 cut(s)	178, 1897, 2180, 2401
NsiI	ATGCAT	1 cut(s)	1372
NspV	TTCGAA	2 cut(s)	2665, 2966
PagI	TCATGA	1 cut(s)	3001
PaqCI	CACCTGC	1 cut(s)	392
PasI	CCCWGGG	1 cut(s)	3091
PceI	AGGCCT	1 cut(s)	2689
PctI	GAATGC	2 cut(s)	841, 2431
PdiI	GCCGGC	1 cut(s)	1513
PfoI	TCCNGGA	3 cut(s)	160, 1471, 1852
PkrI	GCNGC	9 cut(s)	112, 400, 1042, 1454, 1834, 2059, 2772, 2775, 2842
PleI	GAGTC	6 cut(s)	516, 1538, 1685, 1920, 2299, 2408
PmaCI	CACGTG	1 cut(s)	243
PmlI	CACGTG	1 cut(s)	243
PpsI	GAGTC	6 cut(s)	516, 1538, 1685, 1920, 2299, 2408
Ppu21I	YACGTR	4 cut(s)	76, 243, 1102, 2311
PpuMI	RGGWCCY	3 cut(s)	587, 941, 953
PshBI	ATTAAT	1 cut(s)	147
PsiI	TTATAA	1 cut(s)	1130
Psp124BI	GAGCTC	1 cut(s)	2740
Psp1406I	AACGTT	1 cut(s)	684
Psp5II	RGGWCCY	3 cut(s)	587, 941, 953
Psp6I	CCWGG	6 cut(s)	160, 219, 652, 1852, 1999, 3090
PspCI	CACGTG	1 cut(s)	243
PspFI	CCCAGC	3 cut(s)	1200, 2930, 3104
PspGI	CCWGG	6 cut(s)	160, 219, 652, 1852, 1999, 3090
PspN4I	GGNNCC	9 cut(s)	64, 462, 589, 942, 1523, 1809, 1925, 1971, 3171
PspPI	GGNCC	7 cut(s)	90, 164, 587, 941, 953, 1997, 2039
PspPPI	RGGWCCY	3 cut(s)	587, 941, 953
PsrI	GAACNNNNNNTAC	2 cut(s)	1916, 1948
PstI	CTGCAG	2 cut(s)	403, 1123
PstNI	CAGNNNCTG	1 cut(s)	1826
PsuI	RGATCY	3 cut(s)	1010, 1601, 1969
PvuII	CAGCTG	1 cut(s)	2106
RsaI	GTAC	6 cut(s)	758, 1294, 1644, 2356, 2902, 2948
RsaNI	GTAC	6 cut(s)	757, 1293, 1643, 2355, 2901, 2947
RseI	CAYNNNNRTG	2 cut(s)	889, 1359
SacI	GAGCTC	1 cut(s)	2740
SaqAI	TTAA	9 cut(s)	126, 147, 174, 345, 1068, 1191, 1283, 1584, 2094
SatI	GCNGC	9 cut(s)	111, 399, 1041, 1453, 1833, 2058, 2771, 2774, 2841
Sau96I	GGNCC	7 cut(s)	90, 164, 587, 941, 953, 1997, 2039
ScaI	AGTACT	1 cut(s)	1644
SchI	GAGTC	6 cut(s)	517, 1538, 1686, 1921, 2300, 2409
ScrFI	CCNGG	9 cut(s)	162, 221, 654, 674, 1473, 1854, 2001, 3025, 3092
SduI	GDGCHC	3 cut(s)	681, 1718, 2740
SexAI	ACCWGGT	1 cut(s)	1999
SfaNI	GCATC	7 cut(s)	457, 576, 699, 956, 2219, 2338, 2917
SfcI	CTRYAG	2 cut(s)	399, 1119
SfuI	TTCGAA	2 cut(s)	2665, 2966
SinI	GGWCC	6 cut(s)	90, 164, 587, 941, 953, 1997
SmiMI	CAYNNNNRTG	2 cut(s)	889, 1359
SmlI	CTYRAG	3 cut(s)	1190, 1798, 2234
SmoI	CTYRAG	3 cut(s)	1190, 1798, 2234
SnaBI	TACGTA	1 cut(s)	1102
SseBI	AGGCCT	1 cut(s)	2689
SsiI	CCGC	5 cut(s)	446, 458, 667, 1187, 2771
SspMI	CTAG	8 cut(s)	551, 699, 1556, 2594, 2658, 2886, 3042, 3235
SstI	GAGCTC	1 cut(s)	2740
StuI	AGGCCT	1 cut(s)	2689
StyD4I	CCNGG	9 cut(s)	160, 219, 652, 672, 1471, 1852, 1999, 3023, 3090
StyI	CCWWGG	3 cut(s)	550, 2067, 3080
TaiI	ACGT	8 cut(s)	78, 245, 687, 858, 1104, 1796, 2313, 3140
TaqI	TCGA	6 cut(s)	981, 1181, 1712, 2418, 2665, 2966
TatI	WGTACW	2 cut(s)	1642, 2900
TauI	GCSGC	1 cut(s)	2773
Tru1I	TTAA	9 cut(s)	126, 147, 174, 345, 1068, 1191, 1283, 1584, 2094
Tru9I	TTAA	9 cut(s)	126, 147, 174, 345, 1068, 1191, 1283, 1584, 2094
TscAI	CASTG	4 cut(s)	112, 850, 1345, 2809
TseFI	GTSAC	4 cut(s)	178, 1897, 2180, 2401
TseI	GCWGC	8 cut(s)	110, 398, 1040, 1452, 1832, 2057, 2773, 2840
Tsp45I	GTSAC	4 cut(s)	178, 1897, 2180, 2401
TspGWI	ACGGA	3 cut(s)	538, 594, 2420
TspRI	CASTG	4 cut(s)	112, 850, 1345, 2809
Vha464I	CTTAAG	1 cut(s)	1190
VneI	GTGCAC	1 cut(s)	677
VpaK11BI	GGWCC	6 cut(s)	90, 164, 587, 941, 953, 1997
VspI	ATTAAT	1 cut(s)	147
XagI	CCTNNNNNAGG	1 cut(s)	948
XapI	RAATTY	4 cut(s)	555, 706, 880, 2628
XbaI	TCTAGA	1 cut(s)	2593
XmaJI	CCTAGG	1 cut(s)	550
XmiI	GTMKAC	3 cut(s)	500, 2307, 3110
XspI	CTAG	8 cut(s)	551, 699, 1556, 2594, 2658, 2886, 3042, 3235
ZrmI	AGTACT	1 cut(s)	1644
Zsp2I	ATGCAT	1 cut(s)	1372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.