Rorug06G0148600

Monocopper oxidase-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
21270103 .. 21270581
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0148600.1

Sequence Viewer

Length: 408 bp
ATGAGGATTGATTTTGATACTACAAGACCTCTGGCCACTTTTATTCAGCTCCCACGATCTAATTCCAGTGTTTCTAAAAGTAGATACGTCAAGCATCCTCTTTTGGTCAAGTTGGGAGTAATTTATGATTCTTCCCTAGTTGCAGATCCCCCTCAAAAGCCAATCTTTACTCACGACCATTTCCCACGGGAGTTCCCATATGCTCCGACCACGGGCATCTTTCGCCGGAATCCTCCTAAGGATTTTTCAAATCTTGAAATTACTGTTGCAACTGATGTGGACAGACCCCCTTTGGCACACTTTTCAACTATTGAAAGGGACAGCCCCAACAGCTCTCTGCCATCAAAGGAAAGGTACATCTCAATCCCCTATTGTGATACAAAGACCAAAGCTCTGCCTACACCCTGA

Protein Analysis

135

Amino Acids

15.33

Weight (kDa)

9.33

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012751)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 33
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 4 cut(s) 249, 257, 306, 314
AluBI AGCT 3 cut(s) 49, 333, 392
AluI AGCT 3 cut(s) 49, 333, 392
AlwI GGATC 1 cut(s) 140
AoxI GGCC 1 cut(s) 33
AxyI CCTNAGG 1 cut(s) 237
BalI TGGCCA 1 cut(s) 35
BccI CCATC 1 cut(s) 349
BfaI CTAG 1 cut(s) 137
BmsI GCATC 2 cut(s) 103, 225
BsaJI CCNNGG 2 cut(s) 185, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 185, 210
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 66
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 56, 145
BspANI GGCC 1 cut(s) 35
BspPI GGATC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 185, 210
BssMI GATC 2 cut(s) 56, 145
Bst4CI ACNGT 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 2 cut(s) 185, 210
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 2 cut(s) 59, 148
BstMBI GATC 2 cut(s) 56, 145
BstMWI GCNNNNNNNGC 2 cut(s) 222, 330
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 2 cut(s) 185, 210
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 73
Csp6I GTAC 1 cut(s) 355
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviJI RGCY 6 cut(s) 35, 49, 160, 324, 333, 392
CviKI_1 RGCY 6 cut(s) 35, 49, 160, 324, 333, 392
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 58, 147
DpnII GATC 2 cut(s) 56, 145
EaeI YGGCCR 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 237
FaiI YATR 3 cut(s) 126, 199, 201
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 332
FauNDI CATATG 1 cut(s) 199
FokI GGATG 1 cut(s) 81
FspBI CTAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 226
HinfI GANTC 2 cut(s) 128, 229
HpaII CCGG 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 173, 254
Hpy8I GTNNAC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 143, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 330
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 87
Kzo9I GATC 2 cut(s) 56, 145
LmnI GCTCC 2 cut(s) 54, 208
LpnPI CCDG 3 cut(s) 17, 79, 239
LweI GCATC 2 cut(s) 103, 225
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 87
MalI GATC 2 cut(s) 58, 147
MboI GATC 2 cut(s) 56, 145
MboII GAAGA 1 cut(s) 123
MflI RGATCY 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 3 cut(s) 61, 120, 258
MluNI TGGCCA 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 4 cut(s) 39, 108, 162, 243
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 1 cut(s) 226
MwoI GCNNNNNNNGC 2 cut(s) 222, 330
NdeI CATATG 1 cut(s) 199
NdeII GATC 2 cut(s) 56, 145
PfeI GAWTC 2 cut(s) 128, 229
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
Sau3AI GATC 2 cut(s) 56, 145
SetI ASST 6 cut(s) 31, 51, 90, 335, 356, 394
SfaNI GCATC 2 cut(s) 103, 225
Sse9I AATT 3 cut(s) 61, 120, 258
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 90
TasI AATT 3 cut(s) 61, 120, 258
TfiI GAWTC 2 cut(s) 128, 229
TscAI CASTG 1 cut(s) 73
TspRI CASTG 1 cut(s) 73
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.