Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014514.1

Orthogroup ID

OG0023101

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1597

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014514.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 595 bp

tttttccttggtttccttttcgtttcgattcacagaaatccaatcaaagattgcctccattcccaaattgcctggcgttgactcatcggaggaaggtgaagaagatagtggctatggtgagcccactccggtggttggagatcgtgacggaggagagagagtccttcagatccattctctctcctccatgaatctgagctcttgtttcctttctgttcagcacccaacctcctcctctatctccgaacgttaccgaaccgtcctcttcttccttctccgcctctgcctccaaccagaacccgacccttctccacctctaaccagcacccgactaagaacgaagaggagagactggtgtgaggggttagggctcaaagatggtggatgttctagagttcaaggcccccgtttcgaagacgaatcggagcaactgcgaaagaagtgcgcttcgtgtttccgagttgtggatgagtacactgttcgagttgtggatgtctttgctatgtcgcagagtggtactggtgttagtgttgaagcagtggatcatgtgttccagactaacatgctcgatatgcttaagcagattggaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

197

Amino Acids

21.95

Weight (kDa)

5.48

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023101)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003851.1_g000001 Rmu_sc0014514.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034570 Rroxscaffold_6G00424740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	2 cut(s)	164, 550
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	474, 518
AfiI	CCNNNNNNNGG	2 cut(s)	135, 464
AflII	CTTAAG	1 cut(s)	576
AgsI	TTSAA	2 cut(s)	399, 534
AjnI	CCWGG	1 cut(s)	71
AleI	CACNNNNGTG	1 cut(s)	129
AloI	GAACNNNNNNTCC	2 cut(s)	534, 566
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	164, 550
AoxI	GGCC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	108, 129
AsuII	TTCGAA	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BanII	GRGCYC	3 cut(s)	124, 201, 373
BbsI	GAAGAC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	424, 458
BciT130I	CCWGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	391
BfrI	CTTAAG	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	421
Bpu14I	TTCGAA	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 464
Bse1I	ACTGG	2 cut(s)	357, 524
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	3 cut(s)	390, 473, 497
BseLI	CCNNNNNNNGG	2 cut(s)	135, 464
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	357, 524
BseRI	GAGGAG	5 cut(s)	166, 173, 221, 224, 359
BshFI	GGCC	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	135, 464
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	412
Bsp1286I	GDGCHC	3 cut(s)	124, 201, 373
Bsp143I	GATC	3 cut(s)	140, 169, 542
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	404
BspPI	GGATC	2 cut(s)	164, 550
BspT104I	TTCGAA	1 cut(s)	412
BspTI	CTTAAG	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	357, 524
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	3 cut(s)	140, 169, 542
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	260, 479
Bst6I	CTCTTC	2 cut(s)	270, 336
BstAFI	CTTAAG	1 cut(s)	576
BstBI	TTCGAA	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	195, 333
BstF5I	GGATG	3 cut(s)	390, 473, 497
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	3 cut(s)	143, 172, 545
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	140, 169, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	390, 473, 497
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	475, 544
CfoI	GCGC	1 cut(s)	447
Cfr13I	GGNCC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	473, 517
CspCI	CAANNNNNGTGG	2 cut(s)	362, 397
CviAII	CATG	3 cut(s)	188, 546, 563
CviJI	RGCY	5 cut(s)	112, 122, 199, 371, 403
CviKI_1	RGCY	5 cut(s)	112, 122, 199, 371, 403
CviQI	GTAC	2 cut(s)	473, 517
DdeI	CTNAG	2 cut(s)	195, 333
DpnI	GATC	3 cut(s)	142, 171, 544
DpnII	GATC	3 cut(s)	140, 169, 542
Eam1104I	CTCTTC	2 cut(s)	270, 336
EarI	CTCTTC	2 cut(s)	270, 336
EciI	GGCGGA	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	7
Eco24I	GRGCYC	3 cut(s)	124, 201, 373
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	199
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	7
EcoT38I	GRGCYC	3 cut(s)	124, 201, 373
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	3 cut(s)	191, 549, 566
FaiI	YATR	6 cut(s)	115, 189, 504, 547, 564, 573
FatI	CATG	3 cut(s)	187, 545, 562
FokI	GGATG	3 cut(s)	397, 480, 504
FriOI	GRGCYC	3 cut(s)	124, 201, 373
FspBI	CTAG	1 cut(s)	391
GlaI	GCGC	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	447
Hin1II	CATG	3 cut(s)	191, 549, 566
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	80
HindII	GTYRAC	1 cut(s)	80
HinfI	GANTC	5 cut(s)	28, 81, 160, 191, 420
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	108, 129
Hpy166II	GTNNAC	2 cut(s)	80, 475
Hpy188I	TCNGA	6 cut(s)	89, 169, 196, 245, 425, 459
Hpy188III	TCNNGA	3 cut(s)	144, 391, 554
Hpy8I	GTNNAC	2 cut(s)	80, 475
HpyAV	CCTTC	5 cut(s)	87, 174, 282, 316, 583
HpyCH4III	ACNGT	2 cut(s)	260, 479
HpyCH4IV	ACGT	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	2 cut(s)	195, 333
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	3 cut(s)	191, 549, 566
HspAI	GCGC	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	140, 169, 542
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	8 cut(s)	58, 85, 142, 307, 335, 338, 505, 567
MaeI	CTAG	1 cut(s)	391
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	144, 249
MalI	GATC	3 cut(s)	142, 171, 544
MboI	GATC	3 cut(s)	140, 169, 542
MboII	GAAGA	6 cut(s)	111, 114, 257, 260, 353, 426
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	3 cut(s)	124, 201, 373
MluCI	AATT	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	75, 169
MmeI	TCCRAC	2 cut(s)	116, 314
MseI	TTAA	1 cut(s)	577
MslI	CAYNNNNRTG	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	576
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	3 cut(s)	140, 169, 542
NlaIII	CATG	3 cut(s)	191, 549, 566
NlaIV	GGNNCC	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	144
NspI	RCATGY	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	28, 191, 420
PleI	GAGTC	2 cut(s)	75, 168
PpsI	GAGTC	2 cut(s)	75, 168
Psp124BI	GAGCTC	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	474, 518
RsaNI	GTAC	2 cut(s)	473, 517
RseI	CAYNNNNRTG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	577
Sau3AI	GATC	3 cut(s)	140, 169, 542
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	2 cut(s)	75, 169
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	3 cut(s)	124, 201, 373
SetI	ASST	6 cut(s)	98, 201, 231, 251, 317, 594
SfuI	TTCGAA	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	391
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	260, 479
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	4 cut(s)	26, 412, 482, 568
TasI	AATT	1 cut(s)	66
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	3 cut(s)	28, 191, 420
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TscAI	CASTG	2 cut(s)	482, 544
TseFI	GTSAC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	482, 544
Vha464I	CTTAAG	1 cut(s)	576
XbaI	TCTAGA	1 cut(s)	390
XceI	RCATGY	1 cut(s)	566
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.