Rroxscaffold_1G00034570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0023101
Physical Location & Seq
Forward (+)
50209294 .. 50209952
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034570.1

Sequence Viewer

Length: 381 bp
ATGGTGGCTATGGTGAGCCCACTCCGGTGCTCCCGGCCCTCCTCCTCCATCTCCGACGGCACCGAACCGTCCCTCTTCTTCCTTCTCCGCCTCTGCCTCCGACCAAAACCCGACCCTTCTCCGCCTTTGACTAGCACCGGGCTAAGAACGAAGAGGAGAGACGGGTGCGAGGGGTTAGGGCTCAAAGATGGTGGATGTTCCGAGTTCAAGGCCCCGTTTCGGAGACGAATCGGAGCAACTCCGAAAAGAAGTGCGCTTCGTGTTTCCGAGAAAATTGAGTTGTGGATGAGTACACTTGTTCGAGTAGTGGATGTCTTTGCTATGCCGCGAGTGGTACTTGGTGTTAGTGTTGAAGCGAGTGGATCATGTATTCCGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.69

Weight (kDa)

9.86

Isoelectric Point (pI)

80.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023101)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003851.1_g000001 Rmu_sc0014514.1_g000001
rosa_roxburghii Rroxscaffold_1G00034570 Rroxscaffold_6G00424740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 328
AccIII TCCGGA 1 cut(s) 373
AciI CCGC 3 cut(s) 88, 122, 326
AclWI GGATC 1 cut(s) 370
AfaI GTAC 2 cut(s) 292, 336
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 208, 353
AleI CACNNNNGTG 1 cut(s) 25
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 153, 217
AlwI GGATC 1 cut(s) 370
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 2 cut(s) 35, 210
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 36, 211
AsuC2I CCSGG 2 cut(s) 34, 139
AsuHPI GGTGA 1 cut(s) 25
BanI GGYRCC 1 cut(s) 59
BanII GRGCYC 2 cut(s) 20, 183
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 2 cut(s) 56, 182
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 2 cut(s) 34, 139
BcoDI GTCTC 2 cut(s) 153, 217
BfaI CTAG 1 cut(s) 132
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 2 cut(s) 34, 139
BmgT120I GGNCC 2 cut(s) 36, 211
BmiI GGNNCC 2 cut(s) 61, 213
BmrFI CCNGG 2 cut(s) 34, 139
BpuMI CCSGG 2 cut(s) 34, 139
BsaWI WCCGGW 2 cut(s) 24, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseAI TCCGGA 1 cut(s) 373
BseGI GGATG 3 cut(s) 200, 291, 316
BseLI CCNNNNNNNGG 1 cut(s) 219
BseRI GAGGAG 3 cut(s) 31, 34, 169
Bsh1236I CGCG 1 cut(s) 328
BshFI GGCC 2 cut(s) 37, 212
BshNI GGYRCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 4 cut(s) 25, 34, 138, 374
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 153, 217
BsmBI CGTCTC 2 cut(s) 153, 217
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 2 cut(s) 37, 212
Bsp1286I GDGCHC 3 cut(s) 20, 32, 183
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 1 cut(s) 362
BspACI CCGC 3 cut(s) 88, 122, 326
BspANI GGCC 2 cut(s) 37, 212
BspEI TCCGGA 1 cut(s) 373
BspFNI CGCG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 61, 213
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 59
BssMI GATC 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 80, 146
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 200, 291, 316
BstFNI CGCG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 1 cut(s) 365
BstMAI GTCTC 2 cut(s) 153, 217
BstMBI GATC 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 32, 137
BstUI CGCG 1 cut(s) 328
BsuRI GGCC 2 cut(s) 37, 212
BtsCI GGATG 3 cut(s) 200, 291, 316
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 36, 211
Csp6I GTAC 2 cut(s) 291, 335
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 1 cut(s) 366
CviJI RGCY 6 cut(s) 8, 18, 37, 142, 181, 212
CviKI_1 RGCY 6 cut(s) 8, 18, 37, 142, 181, 212
CviQI GTAC 2 cut(s) 291, 335
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 364
DpnII GATC 1 cut(s) 362
Eam1104I CTCTTC 2 cut(s) 80, 146
EarI CTCTTC 2 cut(s) 80, 146
EciI GGCGGA 2 cut(s) 77, 111
Eco24I GRGCYC 2 cut(s) 20, 183
EcoO109I RGGNCCY 1 cut(s) 211
EcoT38I GRGCYC 2 cut(s) 20, 183
Esp3I CGTCTC 2 cut(s) 153, 217
FaeI CATG 1 cut(s) 369
FaiI YATR 3 cut(s) 11, 323, 367
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 3 cut(s) 207, 298, 323
FriOI GRGCYC 2 cut(s) 20, 183
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 1 cut(s) 132
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 326
HaeIII GGCC 2 cut(s) 37, 212
HapII CCGG 4 cut(s) 25, 34, 138, 374
HhaI GCGC 1 cut(s) 256
Hin1II CATG 1 cut(s) 369
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 1 cut(s) 228
HpaII CCGG 4 cut(s) 25, 34, 138, 374
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 7 cut(s) 55, 101, 202, 222, 233, 243, 268
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 1 cut(s) 293
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 92, 126
HpyCH4III ACNGT 1 cut(s) 69
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 1 cut(s) 369
HspAI GCGC 1 cut(s) 254
Kpn2I TCCGGA 1 cut(s) 373
Kzo9I GATC 1 cut(s) 362
LmnI GCTCC 2 cut(s) 35, 233
LpnPI CCDG 3 cut(s) 38, 47, 151
MaeI CTAG 1 cut(s) 132
MalI GATC 1 cut(s) 364
MboI GATC 1 cut(s) 362
MboII GAAGA 3 cut(s) 67, 70, 163
MhlI GDGCHC 3 cut(s) 20, 32, 183
MluCI AATT 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 78, 124
MnlI CCTC 8 cut(s) 49, 52, 55, 83, 101, 107, 147, 163
MroI TCCGGA 1 cut(s) 373
MslI CAYNNNNRTG 1 cut(s) 25
MspI CCGG 4 cut(s) 25, 34, 138, 374
MspR9I CCNGG 2 cut(s) 34, 139
MvnI CGCG 1 cut(s) 328
NciI CCSGG 2 cut(s) 34, 139
NdeII GATC 1 cut(s) 362
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 2 cut(s) 61, 213
OliI CACNNNNGTG 1 cut(s) 25
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 61, 213
PspPI GGNCC 2 cut(s) 36, 211
RsaI GTAC 2 cut(s) 292, 336
RsaNI GTAC 2 cut(s) 291, 335
RseI CAYNNNNRTG 1 cut(s) 25
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 362
Sau96I GGNCC 2 cut(s) 36, 211
ScrFI CCNGG 2 cut(s) 34, 139
SduI GDGCHC 3 cut(s) 20, 32, 183
SmiMI CAYNNNNRTG 1 cut(s) 25
Sse9I AATT 1 cut(s) 273
SsiI CCGC 3 cut(s) 88, 122, 326
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 32, 137
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 301
TasI AATT 1 cut(s) 273
TatI WGTACW 1 cut(s) 290
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 1 cut(s) 228
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.