Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0023101

Physical Location & Seq

Genomic Coordinates Reverse (-)

45901682 .. 45902757

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTCAGCACCCAACCTCCTCCTCTATCTCCGAACGACACCGAATCGTCCTCTTCTTCCTTCTCCGCCTCCGCCTCCGACCGAACCGACCCTTCTCCGCCTCTAACCAGCACACGACTAAGAACGAAGAGGAGAGACCGGTGTGAGGGGTTAGGGCTCAAAGATGGTGGATGTTCTAGAGTTCAAGGCCCCGTTTCGGAGACTAATCGAAGCAACTGCGAAAGAAGTGTGCTTCGTGTTTCCGAGAAAATTGAGTTGTGGATGAGTACACTTGTTCGAGTTGTGGATGTCTTTGCTATGTCGCAGAGTGGTACTAGTGTTAGTGTTGAAGCAGTGGATCATGTGTTCCGGACTAACATGCTCGATATGCTTAAGCGATTGGAAGTCTCGTTAGATATGCCCATAGATTTCACTTTTGTATTCTTTTTATTGGCAATACAGACCGGAGATGGTTGTAGGGTGGTACCATTCGCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

159

Amino Acids

17.5

Weight (kDa)

5.84

Isoelectric Point (pI)

61.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023101)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003851.1_g000001 Rmu_sc0014514.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034570 Rroxscaffold_6G00424740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	463
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	3 cut(s)	66, 72, 98
AclWI	GGATC	1 cut(s)	345
AfaI	GTAC	3 cut(s)	268, 313, 465
AfiI	CCNNNNNNNGG	2 cut(s)	145, 196
AflII	CTTAAG	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	185, 329
AhlI	ACTAGT	1 cut(s)	314
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
Alw26I	GTCTC	3 cut(s)	129, 194, 391
AlwI	GGATC	1 cut(s)	345
Aor13HI	TCCGGA	1 cut(s)	348
AoxI	GGCC	1 cut(s)	187
AsiGI	ACCGGT	1 cut(s)	138
Asp718I	GGTACC	1 cut(s)	463
AspS9I	GGNCC	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	159
BccI	CCATC	2 cut(s)	158, 443
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BcoDI	GTCTC	3 cut(s)	129, 194, 391
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	3 cut(s)	177, 315, 478
BfrI	CTTAAG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	190, 465
BsaI	GGTCTC	1 cut(s)	129
BsaWI	WCCGGW	3 cut(s)	138, 348, 443
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 196
Bse118I	RCCGGY	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	348
BseGI	GGATG	4 cut(s)	176, 267, 292, 473
BseLI	CCNNNNNNNGG	2 cut(s)	145, 196
BseRI	GAGGAG	3 cut(s)	9, 12, 145
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	463
BshTI	ACCGGT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	3 cut(s)	139, 349, 444
BslI	CCNNNNNNNGG	2 cut(s)	145, 196
BsmAI	GTCTC	3 cut(s)	129, 194, 391
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	3 cut(s)	66, 72, 98
BspANI	GGCC	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	190, 465
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	463
BspTI	CTTAAG	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssMI	GATC	1 cut(s)	337
Bst6I	CTCTTC	2 cut(s)	58, 122
BstAFI	CTTAAG	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	4 cut(s)	176, 267, 292, 473
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	3 cut(s)	129, 194, 391
BstMBI	GATC	1 cut(s)	337
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNSI	RCATGY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	4 cut(s)	176, 267, 292, 473
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	3 cut(s)	267, 312, 464
CspAI	ACCGGT	1 cut(s)	138
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	2 cut(s)	341, 358
CviJI	RGCY	2 cut(s)	157, 189
CviKI_1	RGCY	2 cut(s)	157, 189
CviQI	GTAC	3 cut(s)	267, 312, 464
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	58, 122
EarI	CTCTTC	2 cut(s)	58, 122
EciI	GGCGGA	3 cut(s)	55, 61, 87
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	2 cut(s)	344, 361
FaiI	YATR	6 cut(s)	299, 342, 359, 368, 398, 404
FatI	CATG	2 cut(s)	340, 357
FokI	GGATG	4 cut(s)	183, 274, 299, 460
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	3 cut(s)	177, 315, 478
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	3 cut(s)	139, 349, 444
Hin1II	CATG	2 cut(s)	344, 361
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	3 cut(s)	139, 349, 444
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	4 cut(s)	33, 79, 199, 244
Hpy188III	TCNNGA	2 cut(s)	177, 349
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	70, 102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	344, 361
Kpn2I	TCCGGA	1 cut(s)	348
KpnI	GGTACC	1 cut(s)	467
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	4 cut(s)	121, 152, 362, 457
MaeI	CTAG	3 cut(s)	177, 315, 478
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	45, 48, 139
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	9 cut(s)	27, 30, 33, 61, 79, 85, 111, 123, 139
MroI	TCCGGA	1 cut(s)	348
MseI	TTAA	1 cut(s)	372
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	3 cut(s)	139, 349, 444
MwoI	GCNNNNNNNGC	1 cut(s)	367
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	344, 361
NlaIV	GGNNCC	2 cut(s)	190, 465
NspI	RCATGY	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	44
PinAI	ACCGGT	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	190, 465
PspPI	GGNCC	1 cut(s)	188
RsaI	GTAC	3 cut(s)	268, 313, 465
RsaNI	GTAC	3 cut(s)	267, 312, 464
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	66, 72, 98
SspMI	CTAG	3 cut(s)	177, 315, 478
TaqI	TCGA	3 cut(s)	208, 277, 363
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	339
TspRI	CASTG	1 cut(s)	339
Vha464I	CTTAAG	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	3 cut(s)	177, 315, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.