Rmu_sc0016745.1_g000001

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016745.1
OG0010417
Physical Location & Seq
Forward (+)
13 .. 1545
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016745.1_g000001.1.cds

Sequence Viewer

Length: 1452 bp
atgtgcattctcatatttgtgggaacaaatggtgaaacctacttcaatacagctgctcttgtttcttgtgtacaaaacttcccaaaaagtcggggtcctgtggttggaattctaaagggctttgccgggttgggtggcgcaattttgactcagatatatgcgataatgcattccccagatcatgcatctctgattttcatggttgcagttggtccagcaatggtcattatcgctttaatgtttattgtcagaccagttggaggtcacaaacaagtccggccaactgatgacatgagcttcacatttatctacagtgtgtgcctcctgttggctgcttacttgatgggggtcatgctagttgaagatctagttgatttgagccactctgtgatcattatttttactgtggttttgtttgtcctcctcttggttcccattgtgattcctatttcattgagtttcttcaacccagagccaagaattccagaagaggaggcacttctgtctgctacactgaaacaagaagcaggcaaatctgaagcagatgctaatgaggtaatattcagtgaggtggaagatgagaagcctaaagaagttgacttgcttccagcattggaaaggcaaaaacgaatcgcccaattgcaaacaaaactattccaagcggctgcagaaggagcagtcagggtcaagaggaggaggggtccacgtagaggggaagacttcaccttgacacaagctttgatcaaagcagacttctggcttatttttttctcacttctcttgggttctggatctggtttgacagtgattgataatcttggtcagatgagccagtctctaggttatgataatacacatatatttgtatcaatgatcagcatttggaactttcttggtcgtgttggcggtggttacttctctgagattattgtgagggactacgcttatccaagaccggtagcaatggctgtggcacaactcataatggcagttgggcatctcttcattgcttttggatggcctggggcaatgcacattgctaccatcttgattgggctaggctatggggctcattgggcaattgtgccagctgctgcctctgaattgtttggcttgaaaaagtttggggctttatacaatttcctcacactggcaaaccctgctggtagtttagtcttttctggtctgattgctagcagtatatatgaccgtgaagcagagaagcaagctcatcagcctcatctcgtgcatcagattccaggatcaattttccaagggattcctggacaggatgcaccgaagtgtcatggtgcgatatgcttcttcttaacttcggtaataatgtccgtattctgtgttattgcatttcttttgagcatgattctggtacgtaggactaagattgtatataccaatctctatggaaagtcccgttcatctgggctttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nodulin-like

Protein Analysis

483

Amino Acids

52.6

Weight (kDa)

7.68

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01930 AT3G01930 AT5G14120
fragaria_vesca FvH4_6g53700 FvH4_6g53700 FvH4_6g53700
malus_domestica MD09G1009800.v1.1 MD17G1000700.v1.1
prunus_persica Prupe.3G307300_v2.0.a1
pyrus_communis pycom111g00780 pycom17g00820
rosa_chinensis RchiOBHm_Chr2g0175771
rosa_laevigata RLG00000022357
rosa_multiflora Rmu_sc0016745.1_g000001
rosa_roxburghii Rroxscaffold_2G00077030
rosa_rugosa Rorug02G0587600
rosa_samantha Rh2AG666600 Rh2BG678000 Rh2CG641100 Rh2DG691800
rosa_wichuraiana Rw2G054660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 662, 906
AclWI GGATC 2 cut(s) 799, 1270
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 2 cut(s) 108, 480
AcuI CTGAAG 1 cut(s) 558
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 2 cut(s) 72, 1389
AfiI CCNNNNNNNGG 6 cut(s) 104, 260, 328, 427, 710, 1150
AgeI ACCGGT 1 cut(s) 955
AgsI TTSAA 4 cut(s) 46, 362, 466, 1117
AjnI CCWGG 3 cut(s) 1021, 1258, 1282
AleI CACNNNNGTG 1 cut(s) 1300
AluBI AGCT 5 cut(s) 53, 297, 737, 1091, 1229
AluI AGCT 5 cut(s) 53, 297, 737, 1091, 1229
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 2 cut(s) 799, 1270
AlwNI CAGNNNCTG 1 cut(s) 1094
AoxI GGCC 2 cut(s) 278, 1019
ApeKI GCWGC 5 cut(s) 53, 332, 665, 1091, 1094
ApoI RAATTY 2 cut(s) 108, 480
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AsiGI ACCGGT 1 cut(s) 955
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 3 cut(s) 95, 212, 701
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 44, 715
AsuNHI GCTAGC 1 cut(s) 1193
AvaII GGWCC 3 cut(s) 95, 212, 701
BanII GRGCYC 1 cut(s) 1072
BauI CACGAG 1 cut(s) 1244
BbsI GAAGAC 1 cut(s) 723
BbvI GCAGC 5 cut(s) 40, 319, 652, 1078, 1081
BccI CCATC 3 cut(s) 337, 1011, 1052
BciT130I CCWGG 3 cut(s) 1023, 1260, 1284
BclI TGATCA 3 cut(s) 390, 741, 873
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 5 cut(s) 356, 368, 839, 1058, 1194
BfmI CTRYAG 2 cut(s) 310, 666
BglII AGATCT 1 cut(s) 364
BisI GCNGC 6 cut(s) 54, 333, 663, 666, 1092, 1095
BlsI GCNGC 6 cut(s) 55, 334, 664, 667, 1093, 1096
Bme1390I CCNGG 4 cut(s) 127, 1023, 1260, 1284
Bme18I GGWCC 3 cut(s) 95, 212, 701
BmgT120I GGNCC 3 cut(s) 95, 212, 701
BmiI GGNNCC 3 cut(s) 96, 432, 702
BmrFI CCNGG 4 cut(s) 127, 1023, 1260, 1284
BmsI GCATC 5 cut(s) 194, 535, 1006, 1258, 1282
BmtI GCTAGC 1 cut(s) 1197
BpiI GAAGAC 1 cut(s) 723
BplI GAGNNNNNCTC 2 cut(s) 820, 852
BpuMI CCSGG 1 cut(s) 127
BsaAI YACGTR 2 cut(s) 707, 1391
BsaJI CCNNGG 2 cut(s) 1022, 1273
BsaWI WCCGGW 1 cut(s) 955
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 260, 328, 427, 710, 1150
Bse118I RCCGGY 1 cut(s) 955
Bse1I ACTGG 3 cut(s) 254, 832, 1155
Bse3DI GCAATG 5 cut(s) 225, 969, 1005, 1035, 1035
BseBI CCWGG 3 cut(s) 1023, 1260, 1284
BseDI CCNNGG 2 cut(s) 1022, 1273
BseGI GGATG 2 cut(s) 1022, 1297
BseLI CCNNNNNNNGG 6 cut(s) 104, 260, 328, 427, 710, 1150
BseMI GCAATG 5 cut(s) 225, 969, 1005, 1035, 1035
BseMII CTCAG 2 cut(s) 164, 912
BseNI ACTGG 3 cut(s) 254, 832, 1155
BseRI GAGGAG 4 cut(s) 413, 506, 706, 709
BseXI GCAGC 5 cut(s) 40, 319, 652, 1078, 1081
BshFI GGCC 2 cut(s) 280, 1021
BshTI ACCGGT 1 cut(s) 955
BsiSI CCGG 3 cut(s) 126, 277, 956
BslFI GGGAC 2 cut(s) 950, 1414
BslI CCNNNNNNNGG 6 cut(s) 104, 260, 328, 427, 710, 1150
BsmAI GTCTC 1 cut(s) 840
BsmFI GGGAC 2 cut(s) 950, 1414
BsmI GAATGC 2 cut(s) 6, 169
BsnI GGCC 2 cut(s) 280, 1021
Bsp1286I GDGCHC 1 cut(s) 1072
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 7 cut(s) 178, 364, 390, 741, 791, 873, 1262
BspACI CCGC 2 cut(s) 662, 906
BspANI GGCC 2 cut(s) 280, 1021
BspCNI CTCAG 2 cut(s) 163, 913
BspLI GGNNCC 3 cut(s) 96, 432, 702
BspMAI CTGCAG 1 cut(s) 670
BspOI GCTAGC 1 cut(s) 1197
BspPI GGATC 2 cut(s) 799, 1270
BsrDI GCAATG 5 cut(s) 225, 969, 1005, 1035, 1035
BsrFI RCCGGY 1 cut(s) 955
BsrGI TGTACA 1 cut(s) 70
BsrI ACTGG 3 cut(s) 254, 832, 1155
BssAI RCCGGY 1 cut(s) 955
BssECI CCNNGG 2 cut(s) 1022, 1273
BssMI GATC 7 cut(s) 178, 364, 390, 741, 791, 873, 1262
BssSI CACGAG 1 cut(s) 1244
BssT1I CCWWGG 1 cut(s) 1273
Bst2BI CACGAG 1 cut(s) 1244
Bst2UI CCWGG 3 cut(s) 1023, 1260, 1284
Bst4CI ACNGT 4 cut(s) 314, 406, 805, 1211
Bst6I CTCTTC 2 cut(s) 483, 1007
BstAPI GCANNNNNTGC 1 cut(s) 1160
BstAUI TGTACA 1 cut(s) 70
BstBAI YACGTR 2 cut(s) 707, 1391
BstC8I GCNNGC 4 cut(s) 529, 1089, 1195, 1227
BstDEI CTNAG 3 cut(s) 150, 921, 1398
BstF5I GGATG 2 cut(s) 1022, 1297
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 7 cut(s) 181, 367, 393, 744, 794, 876, 1265
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 7 cut(s) 178, 364, 390, 741, 791, 873, 1262
BstMWI GCNNNNNNNGC 3 cut(s) 674, 1076, 1160
BstNI CCWGG 3 cut(s) 1023, 1260, 1284
BstSCI CCNGG 4 cut(s) 125, 1021, 1258, 1282
BstSFI CTRYAG 2 cut(s) 310, 666
BstSNI TACGTA 1 cut(s) 1391
BstV1I GCAGC 5 cut(s) 40, 319, 652, 1078, 1081
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 2 cut(s) 364, 791
BstYI RGATCY 2 cut(s) 364, 791
BsuRI GGCC 2 cut(s) 280, 1021
BtsCI GGATG 2 cut(s) 1022, 1297
BtsIMutI CAGTG 5 cut(s) 319, 512, 571, 810, 1148
Cac8I GCNNGC 4 cut(s) 529, 1089, 1195, 1227
CaiI CAGNNNCTG 1 cut(s) 1094
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 955
Cfr13I GGNCC 3 cut(s) 95, 212, 701
Csp6I GTAC 2 cut(s) 71, 1388
CspAI ACCGGT 1 cut(s) 955
CspCI CAANNNNNGTGG 2 cut(s) 951, 986
CviAII CATG 6 cut(s) 182, 199, 292, 352, 1307, 1378
CviQI GTAC 2 cut(s) 71, 1388
DdeI CTNAG 3 cut(s) 150, 921, 1398
DpnI GATC 7 cut(s) 180, 366, 392, 743, 793, 875, 1264
DpnII GATC 7 cut(s) 178, 364, 390, 741, 791, 873, 1262
DraIII CACNNNGTG 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 483, 1007
EarI CTCTTC 2 cut(s) 483, 1007
Eco105I TACGTA 1 cut(s) 1391
Eco130I CCWWGG 1 cut(s) 1273
Eco24I GRGCYC 1 cut(s) 1072
Eco47I GGWCC 3 cut(s) 95, 212, 701
Eco57I CTGAAG 1 cut(s) 558
EcoO109I RGGNCCY 1 cut(s) 95
EcoRI GAATTC 2 cut(s) 108, 480
EcoRII CCWGG 3 cut(s) 1021, 1258, 1282
EcoT14I CCWWGG 1 cut(s) 1273
EcoT22I ATGCAT 2 cut(s) 171, 187
EcoT38I GRGCYC 1 cut(s) 1072
ErhI CCWWGG 1 cut(s) 1273
FaeI CATG 6 cut(s) 185, 202, 295, 355, 1310, 1381
FaqI GGGAC 2 cut(s) 950, 1414
FatI CATG 6 cut(s) 181, 198, 291, 351, 1306, 1377
FbaI TGATCA 3 cut(s) 390, 741, 873
Fnu4HI GCNGC 6 cut(s) 54, 333, 663, 666, 1092, 1095
FokI GGATG 2 cut(s) 1029, 1304
FriOI GRGCYC 1 cut(s) 1072
Fsp4HI GCNGC 6 cut(s) 54, 333, 663, 666, 1092, 1095
FspBI CTAG 5 cut(s) 356, 368, 839, 1058, 1194
GlaI GCGC 1 cut(s) 139
GluI GCNGC 6 cut(s) 54, 333, 663, 666, 1092, 1095
HaeIII GGCC 2 cut(s) 280, 1021
HapII CCGG 3 cut(s) 126, 277, 956
HhaI GCGC 1 cut(s) 140
Hin1II CATG 6 cut(s) 185, 202, 295, 355, 1310, 1381
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 6 cut(s) 148, 442, 630, 1255, 1279, 1381
HpaII CCGG 3 cut(s) 126, 277, 956
HphI GGTGA 2 cut(s) 44, 715
Hpy166II GTNNAC 3 cut(s) 71, 598, 704
Hpy188I TCNGA 9 cut(s) 153, 192, 251, 538, 825, 922, 1102, 1188, 1254
Hpy188III TCNNGA 4 cut(s) 485, 688, 789, 1048
Hpy8I GTNNAC 3 cut(s) 71, 598, 704
HpyAV CCTTC 1 cut(s) 665
HpyCH4III ACNGT 4 cut(s) 314, 406, 805, 1211
HpyCH4IV ACGT 2 cut(s) 706, 1390
HpyF10VI GCNNNNNNNGC 3 cut(s) 674, 1076, 1160
HpyF3I CTNAG 3 cut(s) 150, 921, 1398
HpySE526I ACGT 2 cut(s) 706, 1390
Hsp92II CATG 6 cut(s) 185, 202, 295, 355, 1310, 1381
HspAI GCGC 1 cut(s) 138
Ksp22I TGATCA 3 cut(s) 390, 741, 873
Kzo9I GATC 7 cut(s) 178, 364, 390, 741, 791, 873, 1262
LmnI GCTCC 1 cut(s) 674
Lsp1109I GCAGC 5 cut(s) 40, 319, 652, 1078, 1081
LweI GCATC 5 cut(s) 194, 535, 1006, 1258, 1282
MaeI CTAG 5 cut(s) 356, 368, 839, 1058, 1194
MaeII ACGT 2 cut(s) 706, 1390
MaeIII GTNAC 2 cut(s) 263, 911
MalI GATC 7 cut(s) 180, 366, 392, 743, 793, 875, 1264
MboI GATC 7 cut(s) 178, 364, 390, 741, 791, 873, 1262
MboII GAAGA 7 cut(s) 374, 454, 500, 587, 728, 994, 1315
MfeI CAATTG 2 cut(s) 638, 1080
MflI RGATCY 2 cut(s) 364, 791
MhlI GDGCHC 1 cut(s) 1072
MluCI AATT 8 cut(s) 108, 141, 480, 638, 1080, 1103, 1138, 1266
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 2 cut(s) 85, 238
Mph1103I ATGCAT 2 cut(s) 171, 187
MseI TTAA 2 cut(s) 236, 1328
MslI CAYNNNNRTG 2 cut(s) 17, 1300
MspA1I CMGCKG 2 cut(s) 53, 1091
MspI CCGG 3 cut(s) 126, 277, 956
MspR9I CCNGG 4 cut(s) 127, 1023, 1260, 1284
MunI CAATTG 2 cut(s) 638, 1080
Mva1269I GAATGC 2 cut(s) 6, 169
MvaI CCWGG 3 cut(s) 1023, 1260, 1284
MwoI GCNNNNNNNGC 3 cut(s) 674, 1076, 1160
NciI CCSGG 1 cut(s) 127
NdeII GATC 7 cut(s) 178, 364, 390, 741, 791, 873, 1262
NheI GCTAGC 1 cut(s) 1193
NlaIII CATG 6 cut(s) 185, 202, 295, 355, 1310, 1381
NlaIV GGNNCC 3 cut(s) 96, 432, 702
NmuCI GTSAC 1 cut(s) 263
NsiI ATGCAT 2 cut(s) 171, 187
OliI CACNNNNGTG 1 cut(s) 1300
PctI GAATGC 2 cut(s) 6, 169
PfeI GAWTC 5 cut(s) 442, 630, 1255, 1279, 1381
PfoI TCCNGGA 2 cut(s) 1258, 1282
PinAI ACCGGT 1 cut(s) 955
PkrI GCNGC 6 cut(s) 55, 334, 664, 667, 1093, 1096
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 2 cut(s) 707, 1391
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 3 cut(s) 1021, 1258, 1282
PspGI CCWGG 3 cut(s) 1021, 1258, 1282
PspN4I GGNNCC 3 cut(s) 96, 432, 702
PspPI GGNCC 3 cut(s) 95, 212, 701
PspPPI RGGWCCY 1 cut(s) 95
PstI CTGCAG 1 cut(s) 670
PstNI CAGNNNCTG 1 cut(s) 1094
PsuI RGATCY 2 cut(s) 364, 791
PvuII CAGCTG 2 cut(s) 53, 1091
RsaI GTAC 2 cut(s) 72, 1389
RsaNI GTAC 2 cut(s) 71, 1388
RseI CAYNNNNRTG 2 cut(s) 17, 1300
SaqAI TTAA 2 cut(s) 236, 1328
SatI GCNGC 6 cut(s) 54, 333, 663, 666, 1092, 1095
Sau3AI GATC 7 cut(s) 178, 364, 390, 741, 791, 873, 1262
Sau96I GGNCC 3 cut(s) 95, 212, 701
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 4 cut(s) 127, 1023, 1260, 1284
SduI GDGCHC 1 cut(s) 1072
SfaNI GCATC 5 cut(s) 194, 535, 1006, 1258, 1282
SfcI CTRYAG 2 cut(s) 310, 666
SinI GGWCC 3 cut(s) 95, 212, 701
SmiMI CAYNNNNRTG 2 cut(s) 17, 1300
SnaBI TACGTA 1 cut(s) 1391
Sse9I AATT 8 cut(s) 108, 141, 480, 638, 1080, 1103, 1138, 1266
SsiI CCGC 2 cut(s) 662, 906
SspI AATATT 1 cut(s) 561
SspMI CTAG 5 cut(s) 356, 368, 839, 1058, 1194
StyD4I CCNGG 4 cut(s) 125, 1021, 1258, 1282
StyI CCWWGG 1 cut(s) 1273
TaaI ACNGT 4 cut(s) 314, 406, 805, 1211
TaiI ACGT 2 cut(s) 709, 1393
TasI AATT 8 cut(s) 108, 141, 480, 638, 1080, 1103, 1138, 1266
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 5 cut(s) 442, 630, 1255, 1279, 1381
Tru1I TTAA 2 cut(s) 236, 1328
Tru9I TTAA 2 cut(s) 236, 1328
TscAI CASTG 5 cut(s) 319, 519, 571, 810, 1155
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 5 cut(s) 53, 332, 665, 1091, 1094
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 5 cut(s) 187, 441, 994, 1425, 1437
TspGWI ACGGA 1 cut(s) 1336
TspRI CASTG 5 cut(s) 319, 519, 571, 810, 1155
VpaK11BI GGWCC 3 cut(s) 95, 212, 701
XapI RAATTY 2 cut(s) 108, 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 1280
XspI CTAG 5 cut(s) 356, 368, 839, 1058, 1194
Zsp2I ATGCAT 2 cut(s) 171, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.