Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019211.1

Orthogroup ID

OG0022629

Physical Location & Seq

Genomic Coordinates Forward (+)

2530 .. 2913

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019211.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgctagtagtgcaaggtcagcttattgtgtggtttgatgatacaaatcctgctaaagaaagcaatgagtttgtggaaaatcttctcaaagatattgacactttgggtatcaagtatgaggaggttacctatactttagattacttctctcagttgatggatatgaccaaggagctgattatccagggtaaagcatatgtcgatgatacacctagagaagagatgcaaaagcaacagatagatgggattgagtcaaagtgtagaaaccagagccaagaggaaaatttgaaactgcagggggagatgacagcaggttcagagaggggtctgcagtgttgtgttagagggaagctagccatgcaggaccctaataaatcgctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003824 GO:0004812 GO:0004818 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

GST_C GST_C_3 tRNA-synt_1c tRNA-synt_1c_C

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

4.49

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323471
rosa_multiflora	Rmu_sc0019211.1_g000002
rosa_samantha	Rh1CG057800 Rh1DG061600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	22, 175, 352
AluI	AGCT	3 cut(s)	22, 175, 352
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	364
AsuNHI	GCTAGC	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	364
BccI	CCATC	2 cut(s)	151, 236
BciT130I	CCWGG	1 cut(s)	185
BfaI	CTAG	3 cut(s)	5, 213, 353
BfmI	CTRYAG	2 cut(s)	293, 329
BfuAI	ACCTGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	213
BmtI	GCTAGC	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	168, 184
Bse3DI	GCAATG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	168, 184
BseJI	GATNNNNATC	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	2 cut(s)	297, 333
BspMI	ACCTGC	1 cut(s)	302
BspOI	GCTAGC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	168, 184
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 19, 358
BstNI	CCWGG	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	2 cut(s)	293, 329
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	338
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	364
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	5 cut(s)	22, 175, 273, 352, 356
CviKI_1	RGCY	5 cut(s)	22, 175, 273, 352, 356
DdeI	CTNAG	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	364
Eco91I	GGTNACC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	364
EcoO65I	GGTNACC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	361
FaiI	YATR	6 cut(s)	117, 132, 164, 196, 198, 359
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	1 cut(s)	357
FauNDI	CATATG	1 cut(s)	196
FspBI	CTAG	3 cut(s)	5, 213, 353
Hin1II	CATG	1 cut(s)	361
HinfI	GANTC	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	319, 383
HpyCH4V	TGCA	5 cut(s)	13, 226, 295, 331, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 19, 358
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	63, 170, 197, 281, 281, 297, 347
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	3 cut(s)	5, 213, 353
MaeIII	GTNAC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	74, 230
MluCI	AATT	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	112, 115, 271, 315, 338
MroXI	GAANNNNTTC	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	10, 19, 358
NdeI	CATATG	1 cut(s)	196
NheI	GCTAGC	1 cut(s)	352
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	81
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	364
PspPPI	RGGWCCY	1 cut(s)	364
PstI	CTGCAG	2 cut(s)	297, 333
Sau96I	GGNCC	1 cut(s)	364
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	8 cut(s)	19, 24, 126, 131, 177, 214, 316, 354
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	2 cut(s)	293, 329
SinI	GGWCC	1 cut(s)	364
Sse9I	AATT	1 cut(s)	283
SspMI	CTAG	3 cut(s)	5, 213, 353
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	168
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	283
TscAI	CASTG	1 cut(s)	338
TspRI	CASTG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	3 cut(s)	5, 213, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.