Rh1CG057800

aminoacylase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0022629
Physical Location & Seq
Forward (+)
11388300 .. 11396433
8134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG057800.1

Sequence Viewer

Length: 891 bp
ATGCAATGCCTGATTGAGCTGCTGAGGATGCTGAGGATGCTAAGACTGATGGCGGGGGTGGTAGATGGTGGGCGTGAGGTAGCGAGCGATGGGGACTGCACAAATGTGCCCGGTGAATGGGATGGCTATGGAGCAGACTTCACAACCGAAGGGAACCCGATTGAACTCCCAGAAAGGGTTGTGCCTGATGCTTACAGGGAGTGGGAGGTTAAGGTTTTCCACTGGCAGACTCAATGTCCCACTCTTGCTGACCCAGAAGACCAAGTTCTTACCTACAAGACGATAGATGTGAAGCCGGATGTGAAGCCGATGCTGCTACACGTGGAGGATAAGAGTTTGAATAAGTTGTTGGAAGTAGAGTATTGCTTGATCAATCCTCAAGATAAGGAGTCTCGTTTGAGGATAATTCAGGTGATTCTCATAGACAATATGAAGATGGTATTGCAGAGTCTTAGAGTTCTTTGTGAACAGTGGTATGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGCCATCCGTGATTCTGCTTTTGCTTCTACGCCCGCATTGGAAGCTTCAAAAGTTGTTGGTACTTGGCAGAGCTCCAGTGCTGTTGCCACTTTTAATGGTTCTCAAAATTATGAGGAGGTTACCTATACTTTAGATTACTTCTCTAAGTTGATGGATATGACCAAGGAGCTGATTATCCAGGGTAAAGCATATGTCGATGATACACCTAGAGAAGAGACGCAAAAACAACAGATAGATGGGATTGAGTCAAAGTGTAGAAACCAGAGCCAAGAGGAAAATTTGAAACTGCGGGGGGAGATGACAGCAGGTTCAAAGAGGGGTCTGCAGTGTTGTGTTAGAGGGAAGCTGGCCATGCAGGACCCTAATAAATCGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

33.5

Weight (kDa)

4.89

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c PF00749 207 - 292 6.3e-14 tRNA synthetases class I (E and Q), catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022629)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0323471
rosa_multiflora Rmu_sc0019211.1_g000002
rosa_samantha Rh1CG057800 Rh1DG061600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 809
AciI CCGC 3 cut(s) 53, 546, 802
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 1 cut(s) 790
AcvI CACGTG 1 cut(s) 322
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 2 cut(s) 117, 175
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 5 cut(s) 164, 340, 561, 796, 825
AhdI GACNNNNNGTC 1 cut(s) 234
AjnI CCWGG 1 cut(s) 690
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 5 cut(s) 19, 557, 585, 682, 859
AluI AGCT 5 cut(s) 19, 557, 585, 682, 859
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 2 cut(s) 396, 722
AoxI GGCC 2 cut(s) 479, 861
ApeKI GCWGC 2 cut(s) 19, 313
ApoI RAATTY 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 479, 871
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 125, 424
AvaII GGWCC 1 cut(s) 871
BaeGI GKGCMC 1 cut(s) 111
BalI TGGCCA 1 cut(s) 863
BanII GRGCYC 1 cut(s) 587
BbrPI CACGTG 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 587
BbvCI CCTCAGC 2 cut(s) 23, 32
BbvI GCAGC 2 cut(s) 6, 300
BccI CCATC 8 cut(s) 43, 59, 83, 116, 430, 524, 658, 743
BciT130I CCWGG 1 cut(s) 692
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 396, 722
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 1 cut(s) 836
BfuAI ACCTGC 1 cut(s) 809
BisI GCNGC 2 cut(s) 20, 314
BlsI GCNGC 2 cut(s) 21, 315
Bme1390I CCNGG 2 cut(s) 111, 692
Bme18I GGWCC 1 cut(s) 871
BmeRI GACNNNNNGTC 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 479, 871
BmiI GGNNCC 2 cut(s) 155, 873
BmrFI CCNGG 2 cut(s) 111, 692
BmsI GCATC 4 cut(s) 18, 27, 178, 300
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 571
Bpu10I CCTNAGC 2 cut(s) 23, 32
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 675, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 175
Bse1I ACTGG 2 cut(s) 227, 588
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 2 cut(s) 675, 691
BseGI GGATG 6 cut(s) 33, 42, 127, 304, 515, 516
BseLI CCNNNNNNNGG 2 cut(s) 117, 175
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 14, 23
BseNI ACTGG 2 cut(s) 227, 588
BseRI GAGGAG 1 cut(s) 641
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 2 cut(s) 6, 300
BsgI GTGCAG 1 cut(s) 82
BshFI GGCC 2 cut(s) 481, 863
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 2 cut(s) 111, 296
BslFI GGGAC 2 cut(s) 107, 222
BslI CCNNNNNNNGG 2 cut(s) 117, 175
BsmAI GTCTC 2 cut(s) 396, 722
BsmBI CGTCTC 1 cut(s) 722
BsmFI GGGAC 2 cut(s) 107, 222
BsnI GGCC 2 cut(s) 481, 863
Bsp1286I GDGCHC 2 cut(s) 111, 587
Bsp143I GATC 1 cut(s) 369
BspACI CCGC 3 cut(s) 53, 546, 802
BspANI GGCC 2 cut(s) 481, 863
BspCNI CTCAG 2 cut(s) 15, 24
BspLI GGNNCC 2 cut(s) 155, 873
BspMAI CTGCAG 1 cut(s) 840
BspMI ACCTGC 1 cut(s) 809
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 227, 588
BssECI CCNNGG 2 cut(s) 675, 691
BssMI GATC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 1 cut(s) 720
BstBAI YACGTR 1 cut(s) 322
BstC8I GCNNGC 3 cut(s) 85, 546, 861
BstDEI CTNAG 5 cut(s) 23, 32, 41, 452, 657
BstEII GGTNACC 1 cut(s) 631
BstF5I GGATG 6 cut(s) 33, 42, 127, 304, 515, 516
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 2 cut(s) 396, 722
BstMBI GATC 1 cut(s) 369
BstMWI GCNNNNNNNGC 5 cut(s) 28, 37, 313, 554, 865
BstNI CCWGG 1 cut(s) 692
BstPI GGTNACC 1 cut(s) 631
BstSCI CCNGG 2 cut(s) 109, 690
BstSFI CTRYAG 1 cut(s) 836
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 6, 300
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 481, 863
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 6 cut(s) 33, 42, 127, 304, 515, 516
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 4 cut(s) 220, 476, 595, 845
BveI ACCTGC 1 cut(s) 809
Cac8I GCNNGC 3 cut(s) 85, 546, 861
Cfr13I GGNCC 2 cut(s) 479, 871
CseI GACGC 1 cut(s) 739
Csp6I GTAC 1 cut(s) 573
CviAII CATG 1 cut(s) 865
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 5 cut(s) 23, 32, 41, 452, 657
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
DriI GACNNNNNGTC 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 1 cut(s) 720
Eam1105I GACNNNNNGTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 720
Ecl136II GAGCTC 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 871
Eco53kI GAGCTC 1 cut(s) 585
Eco72I CACGTG 1 cut(s) 322
Eco91I GGTNACC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 871
EcoO65I GGTNACC 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 690
EcoT14I CCWWGG 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 675
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 1 cut(s) 868
FaqI GGGAC 2 cut(s) 107, 222
FatI CATG 1 cut(s) 864
FauI CCCGC 3 cut(s) 46, 553, 795
FauNDI CATATG 1 cut(s) 703
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 20, 314
FokI GGATG 6 cut(s) 40, 49, 134, 311, 503, 522
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 2 cut(s) 20, 314
FspBI CTAG 1 cut(s) 720
GluI GCNGC 2 cut(s) 20, 314
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 2 cut(s) 481, 863
HapII CCGG 2 cut(s) 111, 296
HgaI GACGC 1 cut(s) 739
Hin1II CATG 1 cut(s) 868
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 6 cut(s) 229, 389, 415, 448, 524, 758
HpaII CCGG 2 cut(s) 111, 296
HphI GGTGA 2 cut(s) 125, 424
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 488, 890
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 5 cut(s) 4, 99, 445, 838, 868
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 37, 313, 554, 865
HpyF3I CTNAG 5 cut(s) 23, 32, 41, 452, 657
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 868
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 1 cut(s) 369
LmnI GCTCC 4 cut(s) 131, 496, 590, 679
Lsp1109I GCAGC 2 cut(s) 6, 300
LweI GCATC 4 cut(s) 18, 27, 178, 300
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 631
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 3 cut(s) 269, 445, 737
MhlI GDGCHC 2 cut(s) 111, 587
MlsI TGGCCA 1 cut(s) 863
MluCI AATT 4 cut(s) 405, 500, 619, 790
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 4 cut(s) 223, 398, 457, 767
MmeI TCCRAC 1 cut(s) 330
Mox20I TGGCCA 1 cut(s) 863
MscI TGGCCA 1 cut(s) 863
MseI TTAA 2 cut(s) 210, 606
MslI CAYNNNNRTG 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 863
MspI CCGG 2 cut(s) 111, 296
MspR9I CCNGG 2 cut(s) 111, 692
MvaI CCWGG 1 cut(s) 692
MwoI GCNNNNNNNGC 5 cut(s) 28, 37, 313, 554, 865
NciI CCSGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 703
NdeII GATC 1 cut(s) 369
NlaIII CATG 1 cut(s) 868
NlaIV GGNNCC 2 cut(s) 155, 873
OliI CACNNNNGTG 1 cut(s) 104
PfeI GAWTC 2 cut(s) 415, 524
PkrI GCNGC 2 cut(s) 21, 315
PleI GAGTC 4 cut(s) 223, 397, 456, 766
PmaCI CACGTG 1 cut(s) 322
PmlI CACGTG 1 cut(s) 322
PpsI GAGTC 4 cut(s) 223, 397, 456, 766
Ppu21I YACGTR 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 871
Psp124BI GAGCTC 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 871
Psp6I CCWGG 1 cut(s) 690
PspCI CACGTG 1 cut(s) 322
PspEI GGTNACC 1 cut(s) 631
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 2 cut(s) 155, 873
PspPI GGNCC 2 cut(s) 479, 871
PspPPI RGGWCCY 1 cut(s) 871
PstI CTGCAG 1 cut(s) 840
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 1 cut(s) 104
SacI GAGCTC 1 cut(s) 587
SaqAI TTAA 2 cut(s) 210, 606
SatI GCNGC 2 cut(s) 20, 314
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 2 cut(s) 479, 871
SchI GAGTC 4 cut(s) 223, 398, 457, 767
ScrFI CCNGG 2 cut(s) 111, 692
SduI GDGCHC 2 cut(s) 111, 587
SfaNI GCATC 4 cut(s) 18, 27, 178, 300
SfcI CTRYAG 1 cut(s) 836
SinI GGWCC 1 cut(s) 871
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 4 cut(s) 405, 500, 619, 790
SsiI CCGC 3 cut(s) 53, 546, 802
SspMI CTAG 1 cut(s) 720
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 2 cut(s) 109, 690
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 1 cut(s) 471
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 708
TasI AATT 4 cut(s) 405, 500, 619, 790
TfiI GAWTC 2 cut(s) 415, 524
Tru1I TTAA 2 cut(s) 210, 606
Tru9I TTAA 2 cut(s) 210, 606
TscAI CASTG 4 cut(s) 227, 476, 595, 845
TseI GCWGC 2 cut(s) 19, 313
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 4 cut(s) 227, 476, 595, 845
VpaK11BI GGWCC 1 cut(s) 871
XapI RAATTY 1 cut(s) 790
XspI CTAG 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.