Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022408.1

Orthogroup ID

OG0013431

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2924

Gene Structure 2924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022408.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

gtcaattcccagctcatcagcaatatgtgcacagatgctctttctgctgaaaagtattattatttcattcgacttatgggccggaaggcatcacatgttgccttggagtgcacccttcaatctcatccaaacttggtaattcttggtgaggaggtggctgcatccaagctaacactttttgacattacaacccgaatctgtgatgcaatccaagatcgtgccacacaagagaagaatcatggtgtcatcctattaccggaaggactcatagaaagcattcctgaagtgtatgccctcttgaaggaaattcatggtttgtataggcaaggagtttctgccgataagatttcttctcaactctcaccgtgggcttctgctctgtttgaatttttgccacattttatcaagaaacagctgcttcttttgccggaatcagatgactctgcacagttatctcagattgagacagagaaactttttgcacatcttgtggaggtcgagatgaacaagcgccagaaagaaggcacatacaaggggaagaagtttaatgctatctgccactttttcggttatcaggctcgggggtctttaccatcaaaattcgattgtgattatgcctatgttctagggcacatctgctaccacattcttgctgctggtttgaatggttacatggcaactataactaacctgaaaaatccattgaacaagtggcgttgtggcgctgctccacttacggcaatgatgactgtgaagcgctggtctcaaaatcctgggtctactgcatctattggaaaacctggcatttttccagctaccgtagatttgaaaggcaaagcatatgagctgttgagaaaaaatgctacaaaattcctgctggatgatatctacagaaatcctgggcctcttcaatttgaaggtcctggtgctgattccaaggctgtaacactgtgcgttgaagaccaggattacatggggcgcatcaagaaattgcaggaatatcttgaccagattcgaaccattgtaaagcctgggtgctcacaggaggttctgaaagcagctttgagtgtcatgggctctgtaacagaagtcctaactgttatgtcttcatcttctttgaatgggccgtcatctctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008443 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0010033 GO:0015979 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0034284 GO:0034285 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0047334 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

379

Amino Acids

41.96

Weight (kDa)

8.27

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20950 AT1G76550
fragaria_vesca	FvH4_5g26380 FvH4_5g26380
malus_domestica	MD06G1002300.v1.1
prunus_persica	Prupe.5G003400_v2.0.a1
pyrus_communis	pycom06g00240
rosa_chinensis	RchiOBHm_Chr7g0217221
rosa_laevigata	RLG00000002501
rosa_multiflora	Rmu_sc0007586.1_g000002 Rmu_sc0022408.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242490
rosa_rugosa	Rorug07G0167300
rosa_samantha	Rh7AG306300 Rh7BG297600 Rh7CG325400 Rh7DG306100
rosa_wichuraiana	Rw7G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	779
AcsI	RAATTY	4 cut(s)	306, 386, 599, 869
AcuI	CTGAAG	1 cut(s)	303
AfeI	AGCGCT	1 cut(s)	758
AfiI	CCNNNNNNNGG	2 cut(s)	256, 301
AflIII	ACRYGT	1 cut(s)	94
AjnI	CCWGG	6 cut(s)	772, 799, 898, 922, 963, 1030
AluBI	AGCT	6 cut(s)	13, 169, 415, 815, 847, 1061
AluI	AGCT	6 cut(s)	13, 169, 415, 815, 847, 1061
Alw21I	GWGCWC	3 cut(s)	32, 113, 1040
Alw26I	GTCTC	2 cut(s)	458, 768
Alw44I	GTGCAC	2 cut(s)	28, 109
Ama87I	CYCGRG	1 cut(s)	579
Aor51HI	AGCGCT	1 cut(s)	758
AoxI	GGCC	3 cut(s)	79, 902, 1124
ApaLI	GTGCAC	2 cut(s)	28, 109
ApeKI	GCWGC	5 cut(s)	158, 415, 653, 725, 1058
ApoI	RAATTY	4 cut(s)	306, 386, 599, 869
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	4 cut(s)	513, 725, 759, 981
AspS9I	GGNCC	4 cut(s)	79, 902, 920, 1124
AsuHPI	GGTGA	2 cut(s)	158, 354
AsuII	TTCGAA	1 cut(s)	1015
AvaI	CYCGRG	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	920
BaeGI	GKGCMC	3 cut(s)	32, 113, 633
BanII	GRGCYC	1 cut(s)	1079
BbsI	GAAGAC	2 cut(s)	966, 1098
Bbv12I	GWGCWC	3 cut(s)	32, 113, 1040
BbvI	GCAGC	5 cut(s)	145, 402, 640, 712, 1070
BccI	CCATC	1 cut(s)	601
BceAI	ACGGC	2 cut(s)	753, 1111
BciT130I	CCWGG	6 cut(s)	774, 801, 900, 924, 965, 1032
BcoDI	GTCTC	2 cut(s)	458, 768
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	1 cut(s)	889
BfoI	RGCGCY	3 cut(s)	514, 726, 760
BisI	GCNGC	5 cut(s)	159, 416, 654, 726, 1059
BlsI	GCNGC	5 cut(s)	160, 417, 655, 727, 1060
Bme1390I	CCNGG	6 cut(s)	774, 801, 900, 924, 965, 1032
Bme18I	GGWCC	1 cut(s)	920
BmeT110I	CYCGRG	1 cut(s)	579
BmgT120I	GGNCC	4 cut(s)	79, 902, 920, 1124
BmrFI	CCNGG	6 cut(s)	774, 801, 900, 924, 965, 1032
BmsI	GCATC	6 cut(s)	25, 98, 170, 193, 794, 990
BpiI	GAAGAC	2 cut(s)	966, 1098
Bpu14I	TTCGAA	1 cut(s)	1015
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	6 cut(s)	102, 365, 773, 899, 936, 1031
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 301
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	6 cut(s)	774, 801, 900, 924, 965, 1032
BseDI	CCNNGG	6 cut(s)	102, 365, 773, 899, 936, 1031
BseGI	GGATG	4 cut(s)	124, 161, 246, 886
BseLI	CCNNNNNNNGG	2 cut(s)	256, 301
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	3 cut(s)	32, 113, 633
BseXI	GCAGC	5 cut(s)	145, 402, 640, 712, 1070
BseYI	CCCAGC	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	81, 904, 1126
BsiHKAI	GWGCWC	3 cut(s)	32, 113, 1040
BsiHKCI	CYCGRG	1 cut(s)	579
BsiSI	CCGG	3 cut(s)	82, 257, 428
BslI	CCNNNNNNNGG	2 cut(s)	256, 301
BsmAI	GTCTC	2 cut(s)	458, 768
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	81, 904, 1126
Bso31I	GGTCTC	1 cut(s)	768
BsoBI	CYCGRG	1 cut(s)	579
Bsp119I	TTCGAA	1 cut(s)	1015
Bsp1286I	GDGCHC	5 cut(s)	32, 113, 633, 1040, 1079
Bsp143I	GATC	1 cut(s)	214
BspANI	GGCC	3 cut(s)	81, 904, 1126
BspCNI	CTCAG	1 cut(s)	469
BspT104I	TTCGAA	1 cut(s)	1015
BspTNI	GGTCTC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	747
BssECI	CCNNGG	6 cut(s)	102, 365, 773, 899, 936, 1031
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	2 cut(s)	102, 936
Bst2UI	CCWGG	6 cut(s)	774, 801, 900, 924, 965, 1032
Bst4CI	ACNGT	6 cut(s)	366, 450, 751, 820, 951, 1099
Bst6I	CTCTTC	1 cut(s)	912
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	1015
BstDEI	CTNAG	1 cut(s)	456
BstDSI	CCRYGG	1 cut(s)	365
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	4 cut(s)	124, 161, 246, 886
BstH2I	RGCGCY	3 cut(s)	514, 726, 760
BstHHI	GCGC	4 cut(s)	513, 725, 759, 981
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	2 cut(s)	458, 768
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 44, 424
BstNI	CCWGG	6 cut(s)	774, 801, 900, 924, 965, 1032
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	6 cut(s)	772, 799, 898, 922, 963, 1030
BstSFI	CTRYAG	1 cut(s)	889
BstSLI	GKGCMC	3 cut(s)	32, 113, 633
BstV1I	GCAGC	5 cut(s)	145, 402, 640, 712, 1070
BstV2I	GAAGAC	2 cut(s)	966, 1098
BsuRI	GGCC	3 cut(s)	81, 904, 1126
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	4 cut(s)	124, 161, 246, 886
BtsIMutI	CAGTG	1 cut(s)	947
CfoI	GCGC	4 cut(s)	513, 725, 759, 981
Cfr13I	GGNCC	4 cut(s)	79, 902, 920, 1124
CviAII	CATG	6 cut(s)	95, 239, 311, 673, 973, 1072
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
Eco130I	CCWWGG	2 cut(s)	102, 936
Eco24I	GRGCYC	1 cut(s)	1079
Eco31I	GGTCTC	1 cut(s)	768
Eco32I	GATATC	1 cut(s)	886
Eco47I	GGWCC	1 cut(s)	920
Eco47III	AGCGCT	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	579
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRII	CCWGG	6 cut(s)	772, 799, 898, 922, 963, 1030
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	102, 936
EcoT38I	GRGCYC	1 cut(s)	1079
ErhI	CCWWGG	2 cut(s)	102, 936
FaeI	CATG	6 cut(s)	98, 242, 314, 676, 976, 1075
FatI	CATG	6 cut(s)	94, 238, 310, 672, 972, 1071
FauNDI	CATATG	1 cut(s)	841
FblI	GTMKAC	1 cut(s)	779
Fnu4HI	GCNGC	5 cut(s)	159, 416, 654, 726, 1059
FokI	GGATG	4 cut(s)	111, 148, 233, 893
FriOI	GRGCYC	1 cut(s)	1079
Fsp4HI	GCNGC	5 cut(s)	159, 416, 654, 726, 1059
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	4 cut(s)	512, 724, 758, 980
GluI	GCNGC	5 cut(s)	159, 416, 654, 726, 1059
GsaI	CCCAGC	1 cut(s)	13
HaeII	RGCGCY	3 cut(s)	514, 726, 760
HaeIII	GGCC	3 cut(s)	81, 904, 1126
HapII	CCGG	3 cut(s)	82, 257, 428
HhaI	GCGC	4 cut(s)	513, 725, 759, 981
Hin1II	CATG	6 cut(s)	98, 242, 314, 676, 976, 1075
Hin6I	GCGC	4 cut(s)	511, 723, 757, 979
HinP1I	GCGC	4 cut(s)	511, 723, 757, 979
HinfI	GANTC	7 cut(s)	195, 235, 264, 431, 440, 932, 1012
HpaII	CCGG	3 cut(s)	82, 257, 428
HphI	GGTGA	2 cut(s)	158, 354
Hpy166II	GTNNAC	3 cut(s)	30, 111, 780
Hpy188I	TCNGA	3 cut(s)	436, 459, 1053
Hpy188III	TCNNGA	6 cut(s)	281, 298, 406, 499, 985, 1004
Hpy8I	GTNNAC	3 cut(s)	30, 111, 780
HpyAV	CCTTC	6 cut(s)	79, 125, 254, 295, 515, 911
HpyCH4III	ACNGT	6 cut(s)	366, 450, 751, 820, 951, 1099
HpyCH4V	TGCA	8 cut(s)	30, 111, 161, 206, 446, 482, 785, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 44, 424
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	6 cut(s)	98, 242, 314, 676, 976, 1075
HspAI	GCGC	4 cut(s)	511, 723, 757, 979
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	5 cut(s)	145, 402, 640, 712, 1070
LweI	GCATC	6 cut(s)	25, 98, 170, 193, 794, 990
MaeI	CTAG	1 cut(s)	626
MaeIII	GTNAC	3 cut(s)	668, 943, 1081
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	7 cut(s)	244, 342, 550, 899, 971, 1098, 1104
MhlI	GDGCHC	5 cut(s)	32, 113, 633, 1040, 1079
MluCI	AATT	8 cut(s)	4, 138, 306, 386, 599, 869, 911, 989
MlyI	GAGTC	2 cut(s)	258, 434
MnlI	CCTC	6 cut(s)	142, 145, 305, 487, 915, 1039
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	2 cut(s)	546, 1138
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	3 cut(s)	82, 257, 428
MspR9I	CCNGG	6 cut(s)	774, 801, 900, 924, 965, 1032
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	6 cut(s)	774, 801, 900, 924, 965, 1032
MwoI	GCNNNNNNNGC	3 cut(s)	27, 44, 424
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	6 cut(s)	98, 242, 314, 676, 976, 1075
NspI	RCATGY	1 cut(s)	98
NspV	TTCGAA	1 cut(s)	1015
PciI	ACATGT	1 cut(s)	94
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	5 cut(s)	195, 235, 431, 932, 1012
PkrI	GCNGC	5 cut(s)	160, 417, 655, 727, 1060
PleI	GAGTC	2 cut(s)	258, 434
PpsI	GAGTC	2 cut(s)	258, 434
PpuMI	RGGWCCY	1 cut(s)	920
PscI	ACATGT	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	6 cut(s)	772, 799, 898, 922, 963, 1030
PspFI	CCCAGC	1 cut(s)	9
PspGI	CCWGG	6 cut(s)	772, 799, 898, 922, 963, 1030
PspPI	GGNCC	4 cut(s)	79, 902, 920, 1124
PspPPI	RGGWCCY	1 cut(s)	920
PvuII	CAGCTG	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	546, 1138
SatI	GCNGC	5 cut(s)	159, 416, 654, 726, 1059
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	4 cut(s)	79, 902, 920, 1124
SchI	GAGTC	2 cut(s)	258, 434
ScrFI	CCNGG	6 cut(s)	774, 801, 900, 924, 965, 1032
SduI	GDGCHC	5 cut(s)	32, 113, 633, 1040, 1079
SfaNI	GCATC	6 cut(s)	25, 98, 170, 193, 794, 990
SfcI	CTRYAG	1 cut(s)	889
SfuI	TTCGAA	1 cut(s)	1015
SinI	GGWCC	1 cut(s)	920
Sse9I	AATT	8 cut(s)	4, 138, 306, 386, 599, 869, 911, 989
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	6 cut(s)	772, 799, 898, 922, 963, 1030
StyI	CCWWGG	2 cut(s)	102, 936
TaaI	ACNGT	6 cut(s)	366, 450, 751, 820, 951, 1099
TaqI	TCGA	4 cut(s)	70, 498, 603, 1015
TasI	AATT	8 cut(s)	4, 138, 306, 386, 599, 869, 911, 989
TfiI	GAWTC	5 cut(s)	195, 235, 431, 932, 1012
Tru1I	TTAA	2 cut(s)	546, 1138
Tru9I	TTAA	2 cut(s)	546, 1138
TscAI	CASTG	1 cut(s)	954
TseI	GCWGC	5 cut(s)	158, 415, 653, 725, 1058
TspDTI	ATGAA	4 cut(s)	55, 299, 518, 1098
TspRI	CASTG	1 cut(s)	954
VneI	GTGCAC	2 cut(s)	28, 109
VpaK11BI	GGWCC	1 cut(s)	920
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	4 cut(s)	306, 386, 599, 869
XceI	RCATGY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	708
XmiI	GTMKAC	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.