Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023345.1

Orthogroup ID

OG0019361

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1665

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023345.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

aagcatgtgcaacacggctacccctacctcttcaccaacctcctccgctccttcctcgactccgcctccgacgaagattcctacgcagactccgacagcctcgtcgtccagttcggcgaccgccccaggcgcagcccttcctcttctctaacgcaaaaggtcgagcaggtggagtgcggtctcaggctcatggtccctgcgctggcggcgcgtgcgagggacgcccaggcagcgttcgtggagcgcgtggcgaggaactgggggccttacgacgccgggaagaaggaggcggcgaaggcggtgatggcggaggcggagatggaggagatggtgagcgttctggtggatgcgaataggctcagtgcaagactcctctcaggtgcacatgcttctgggtctttcatggcagaagaggaagaagaagaggagaggaggagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

146

Amino Acids

16.22

Weight (kDa)

5.14

Isoelectric Point (pI)

64.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019361)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125401
rosa_multiflora	Rmu_sc0023345.1_g000001 Rmu_ssc0000189.1_g000022
rosa_roxburghii	Rroxscaffold_1G00030940 Rroxscaffold_1G00030950 Rroxscaffold_2G00117580
rosa_samantha	Rh6AG127100 Rh6BG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
AasI	GACNNNNNNGTC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	157
AccBSI	CCGCTC	1 cut(s)	48
AccII	CGCG	2 cut(s)	211, 246
AciI	CCGC	9 cut(s)	46, 63, 121, 177, 206, 290, 299, 308, 314
AcyI	GRCGYC	2 cut(s)	222, 273
AfiI	CCNNNNNNNGG	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	125, 225
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	185
Alw44I	GTGCAC	1 cut(s)	381
AoxI	GGCC	1 cut(s)	263
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	132, 230
AspLEI	GCGC	4 cut(s)	132, 202, 211, 246
AspS9I	GGNCC	2 cut(s)	193, 263
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	3 cut(s)	25, 313, 343
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	2 cut(s)	144, 242
BccI	CCATC	3 cut(s)	298, 313, 322
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	127, 227
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	4 cut(s)	133, 207, 231, 291
BlsI	GCNGC	4 cut(s)	134, 208, 232, 292
Bme1390I	CCNGG	3 cut(s)	127, 227, 277
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	193, 263
BmiI	GGNNCC	2 cut(s)	195, 264
BmrFI	CCNGG	3 cut(s)	127, 227, 277
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	277
BsaHI	GRCGYC	2 cut(s)	222, 273
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	125, 225
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 74, 80, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	109, 263
BseBI	CCWGG	2 cut(s)	127, 227
BseDI	CCNNGG	2 cut(s)	125, 225
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	3 cut(s)	196, 373, 390
BseNI	ACTGG	2 cut(s)	109, 263
BseRI	GAGGAG	4 cut(s)	32, 338, 362, 440
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	144, 242
Bsh1236I	CGCG	2 cut(s)	211, 246
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	265
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	179, 233
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	2 cut(s)	179, 233
BsnI	GGCC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	385
BspACI	CCGC	9 cut(s)	46, 63, 121, 177, 206, 290, 299, 308, 314
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	3 cut(s)	195, 372, 389
BspFNI	CGCG	2 cut(s)	211, 246
BspLI	GGNNCC	2 cut(s)	195, 264
BspMI	ACCTGC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	109, 263
BssECI	CCNNGG	2 cut(s)	125, 225
BssNI	GRCGYC	2 cut(s)	222, 273
Bst2UI	CCWGG	2 cut(s)	127, 227
Bst6I	CTCTTC	4 cut(s)	35, 148, 405, 417
BstACI	GRCGYC	2 cut(s)	222, 273
BstC8I	GCNNGC	2 cut(s)	204, 213
BstDEI	CTNAG	3 cut(s)	182, 359, 376
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	2 cut(s)	211, 246
BstHHI	GCGC	4 cut(s)	132, 202, 211, 246
BstMAI	GTCTC	1 cut(s)	185
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 206, 208, 212, 221, 230, 296, 305
BstNI	CCWGG	2 cut(s)	127, 227
BstNSI	RCATGY	2 cut(s)	8, 389
BstSCI	CCNGG	3 cut(s)	125, 225, 275
BstSLI	GKGCMC	1 cut(s)	385
BstUI	CGCG	2 cut(s)	211, 246
BstV1I	GCAGC	2 cut(s)	144, 242
BsuRI	GGCC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	204, 213
CfoI	GCGC	4 cut(s)	132, 202, 211, 246
Cfr13I	GGNCC	2 cut(s)	193, 263
CseI	GACGC	2 cut(s)	230, 281
CviAII	CATG	4 cut(s)	5, 190, 386, 403
CviJI	RGCY	6 cut(s)	18, 99, 135, 187, 265, 358
CviKI_1	RGCY	6 cut(s)	18, 99, 135, 187, 265, 358
DdeI	CTNAG	3 cut(s)	182, 359, 376
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
Eam1104I	CTCTTC	4 cut(s)	35, 148, 405, 417
EarI	CTCTTC	4 cut(s)	35, 148, 405, 417
EciI	GGCGGA	3 cut(s)	52, 323, 329
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	125, 225
FaeI	CATG	4 cut(s)	8, 193, 389, 406
FaiI	YATR	4 cut(s)	6, 191, 387, 404
FaqI	GGGAC	2 cut(s)	179, 233
FatI	CATG	4 cut(s)	4, 189, 385, 402
Fnu4HI	GCNGC	4 cut(s)	133, 207, 231, 291
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	4 cut(s)	133, 207, 231, 291
GlaI	GCGC	4 cut(s)	131, 201, 210, 245
GluI	GCNGC	4 cut(s)	133, 207, 231, 291
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	230, 281
HhaI	GCGC	4 cut(s)	132, 202, 211, 246
Hin1I	GRCGYC	2 cut(s)	222, 273
Hin1II	CATG	4 cut(s)	8, 193, 389, 406
Hin6I	GCGC	4 cut(s)	130, 200, 209, 244
HinP1I	GCGC	4 cut(s)	130, 200, 209, 244
HinfI	GANTC	4 cut(s)	59, 77, 89, 369
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	25, 313, 343
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	2 cut(s)	70, 94
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	3 cut(s)	74, 107, 275
HpyAV	CCTTC	4 cut(s)	61, 147, 277, 289
HpyCH4V	TGCA	3 cut(s)	10, 365, 383
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 206, 208, 212, 221, 230, 296, 305
HpyF3I	CTNAG	3 cut(s)	182, 359, 376
Hsp92I	GRCGYC	2 cut(s)	222, 273
Hsp92II	CATG	4 cut(s)	8, 193, 389, 406
HspAI	GCGC	4 cut(s)	130, 200, 209, 244
LmnI	GCTCC	2 cut(s)	53, 241
Lsp1109I	GCAGC	2 cut(s)	144, 242
LweI	GCATC	1 cut(s)	337
MbiI	CCGCTC	1 cut(s)	48
MboII	GAAGA	8 cut(s)	22, 86, 135, 292, 422, 428, 431, 434
MhlI	GDGCHC	1 cut(s)	385
MlyI	GAGTC	3 cut(s)	53, 83, 363
MmeI	TCCRAC	2 cut(s)	93, 117
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	127, 227, 277
MvaI	CCWGG	2 cut(s)	127, 227
MvnI	CGCG	2 cut(s)	211, 246
MwoI	GCNNNNNNNGC	8 cut(s)	129, 206, 208, 212, 221, 230, 296, 305
NciI	CCSGG	1 cut(s)	277
NlaIII	CATG	4 cut(s)	8, 193, 389, 406
NlaIV	GGNNCC	2 cut(s)	195, 264
NspI	RCATGY	2 cut(s)	8, 389
PaqCI	CACCTGC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 243
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	134, 208, 232, 292
PleI	GAGTC	3 cut(s)	53, 83, 363
PpsI	GAGTC	3 cut(s)	53, 83, 363
Psp6I	CCWGG	2 cut(s)	125, 225
PspGI	CCWGG	2 cut(s)	125, 225
PspN4I	GGNNCC	2 cut(s)	195, 264
PspPI	GGNCC	2 cut(s)	193, 263
SatI	GCNGC	4 cut(s)	133, 207, 231, 291
Sau96I	GGNCC	2 cut(s)	193, 263
SchI	GAGTC	3 cut(s)	53, 83, 363
ScrFI	CCNGG	3 cut(s)	127, 227, 277
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	5 cut(s)	30, 42, 162, 171, 382
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	193
SsiI	CCGC	9 cut(s)	46, 63, 121, 177, 206, 290, 299, 308, 314
StyD4I	CCNGG	3 cut(s)	125, 225, 275
TaqI	TCGA	2 cut(s)	57, 162
TauI	GCSGC	2 cut(s)	209, 293
TfiI	GAWTC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	2 cut(s)	132, 230
TspDTI	ATGAA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	367
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	193
XceI	RCATGY	2 cut(s)	8, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.