Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0019361

Physical Location & Seq

Genomic Coordinates Reverse (-)

43296968 .. 43305213

Gene Structure 8246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTGGGGAGAGGGCCAAGAGAATCAAGGAAGCATGTGCAACACGGCTACCCCTACCTCTTCACCAACCTCCTCCGCTCCTTCCTCGACTCCGCCTCCGACGAATATTCCGACGCCGACTCCAACAGCCTCGTCGTCCAGTTCGGCGACCGCCTCTGGCGCAGCCCTTCCTCTTCTCTCATTCAAAAGGTCGAGCAGGTGGAGTGCGGTCTCAGGCTCATGGTCCCTGCACTGGCGGCGCGTGCGAGGGACGCCCAGGCAGCGTTCGTGGAGAGCGTGGTGAGGAACTGGGGGCCTTACGACGCCGGGAAGAAGGAGGCGGCGAAGGCGGTGATGGCGGAGGCGATGGAGGCGGAGATGGAGGAATGCCGCTTGGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

127

Amino Acids

14.15

Weight (kDa)

5.7

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019361)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0125401
rosa_multiflora	Rmu_sc0023345.1_g000001 Rmu_ssc0000189.1_g000022
rosa_roxburghii	Rroxscaffold_1G00030940 Rroxscaffold_1G00030950 Rroxscaffold_2G00117580
rosa_samantha	Rh6AG127100 Rh6BG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccBSI	CCGCTC	1 cut(s)	78
AccII	CGCG	1 cut(s)	241
AcyI	GRCGYC	3 cut(s)	114, 252, 303
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	14, 293
ApeKI	GCWGC	2 cut(s)	162, 260
AspLEI	GCGC	2 cut(s)	162, 241
AspS9I	GGNCC	3 cut(s)	14, 223, 293
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	3 cut(s)	55, 292, 343
AvaII	GGWCC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	174, 272
BccI	CCATC	3 cut(s)	328, 340, 352
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	5 cut(s)	163, 237, 261, 321, 370
BlsI	GCNGC	5 cut(s)	164, 238, 262, 322, 371
Bme1390I	CCNGG	2 cut(s)	257, 307
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	14, 223, 293
BmiI	GGNNCC	2 cut(s)	225, 294
BmrFI	CCNGG	2 cut(s)	257, 307
BmrI	ACTGGG	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	307
BsaHI	GRCGYC	3 cut(s)	114, 252, 303
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 104, 110, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	3 cut(s)	139, 237, 293
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	3 cut(s)	139, 237, 293
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	174, 272
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	241
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	16, 295
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	209, 263
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	209, 263
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	16, 295
Bso31I	GGTCTC	1 cut(s)	215
BspANI	GGCC	2 cut(s)	16, 295
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	225, 294
BspMI	ACCTGC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	139, 237, 293
BssECI	CCNNGG	1 cut(s)	255
BssNI	GRCGYC	3 cut(s)	114, 252, 303
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	65, 178
BstACI	GRCGYC	3 cut(s)	114, 252, 303
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	212
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	2 cut(s)	162, 241
BstMAI	GTCTC	1 cut(s)	215
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	8 cut(s)	159, 236, 242, 251, 260, 326, 335, 350
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	255, 305
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	174, 272
BsuRI	GGCC	2 cut(s)	16, 295
BtgZI	GCGATG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	2 cut(s)	162, 241
Cfr13I	GGNCC	3 cut(s)	14, 223, 293
CseI	GACGC	3 cut(s)	122, 260, 311
CviAII	CATG	2 cut(s)	35, 220
CviJI	RGCY	7 cut(s)	16, 48, 129, 165, 217, 295, 377
CviKI_1	RGCY	7 cut(s)	16, 48, 129, 165, 217, 295, 377
DdeI	CTNAG	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	65, 178
EarI	CTCTTC	2 cut(s)	65, 178
EciI	GGCGGA	3 cut(s)	82, 353, 368
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	38, 223
FaiI	YATR	2 cut(s)	36, 221
FaqI	GGGAC	2 cut(s)	209, 263
FatI	CATG	2 cut(s)	34, 219
Fnu4HI	GCNGC	5 cut(s)	163, 237, 261, 321, 370
Fsp4HI	GCNGC	5 cut(s)	163, 237, 261, 321, 370
GlaI	GCGC	2 cut(s)	161, 240
GluI	GCNGC	5 cut(s)	163, 237, 261, 321, 370
HaeIII	GGCC	2 cut(s)	16, 295
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	3 cut(s)	122, 260, 311
HhaI	GCGC	2 cut(s)	162, 241
Hin1I	GRCGYC	3 cut(s)	114, 252, 303
Hin1II	CATG	2 cut(s)	38, 223
Hin6I	GCGC	2 cut(s)	160, 239
HinP1I	GCGC	2 cut(s)	160, 239
HinfI	GANTC	3 cut(s)	23, 89, 119
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	3 cut(s)	55, 292, 343
Hpy188I	TCNGA	2 cut(s)	100, 112
Hpy99I	CGWCG	4 cut(s)	104, 116, 137, 305
HpyAV	CCTTC	4 cut(s)	91, 177, 307, 319
HpyCH4V	TGCA	2 cut(s)	40, 230
HpyF10VI	GCNNNNNNNGC	8 cut(s)	159, 236, 242, 251, 260, 326, 335, 350
HpyF3I	CTNAG	1 cut(s)	212
Hsp92I	GRCGYC	3 cut(s)	114, 252, 303
Hsp92II	CATG	2 cut(s)	38, 223
HspAI	GCGC	2 cut(s)	160, 239
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	2 cut(s)	174, 272
MbiI	CCGCTC	1 cut(s)	78
MboII	GAAGA	3 cut(s)	52, 165, 322
MlyI	GAGTC	2 cut(s)	83, 113
MmeI	TCCRAC	3 cut(s)	123, 135, 147
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	257, 307
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	8 cut(s)	159, 236, 242, 251, 260, 326, 335, 350
NciI	CCSGG	1 cut(s)	307
NlaIII	CATG	2 cut(s)	38, 223
NlaIV	GGNNCC	2 cut(s)	225, 294
NspI	RCATGY	1 cut(s)	38
PaqCI	CACCTGC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 273
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	5 cut(s)	164, 238, 262, 322, 371
PleI	GAGTC	2 cut(s)	83, 113
PpsI	GAGTC	2 cut(s)	83, 113
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	225, 294
PspPI	GGNCC	3 cut(s)	14, 223, 293
SatI	GCNGC	5 cut(s)	163, 237, 261, 321, 370
Sau96I	GGNCC	3 cut(s)	14, 223, 293
SchI	GAGTC	2 cut(s)	83, 113
ScrFI	CCNGG	2 cut(s)	257, 307
SetI	ASST	4 cut(s)	60, 72, 192, 201
SinI	GGWCC	1 cut(s)	223
SspI	AATATT	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	255, 305
TaqI	TCGA	2 cut(s)	87, 192
TauI	GCSGC	3 cut(s)	239, 323, 372
TfiI	GAWTC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	2 cut(s)	162, 260
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	223
XceI	RCATGY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.