Rroxscaffold_1G00030940

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
41933219 .. 41944768
11550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030940.1

Sequence Viewer

Length: 210 bp
ATGTACAAGAAGCATCTAGAAGTCTCAAGAATGTCATATGCCGTGCACATGGAAGAGGAAGCAATAGGAAATTCGAATTACAAAGCAGTGTGGAATTTGGACTTCTTGTTGAGTTTGGATTGGAATTGCCGTGAGATTCTTGAAGGTTCTAGAGGGTTCTTGACGTTTCATCTTCAATTATGGCGTGGAAGACATGTGAGAGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

8.27

Weight (kDa)

7.97

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019361)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 70, 94
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 2 cut(s) 143, 176
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 28
Alw44I GTGCAC 1 cut(s) 44
ApaLI GTGCAC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 70, 94
AsuII TTCGAA 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 48
BceAI ACGGC 2 cut(s) 26, 114
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 2 cut(s) 17, 150
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 196
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 10
BseSI GKGCMC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 28
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 3
BspT104I TTCGAA 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 3
Bst6I CTCTTC 1 cut(s) 48
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 28
BstNSI RCATGY 2 cut(s) 197, 208
BstSLI GKGCMC 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 49, 194, 205
CviQI GTAC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
FaeI CATG 3 cut(s) 52, 197, 208
FaiI YATR 6 cut(s) 37, 39, 50, 181, 195, 206
FatI CATG 3 cut(s) 48, 193, 204
FauNDI CATATG 1 cut(s) 37
FspBI CTAG 2 cut(s) 17, 150
Hin1II CATG 3 cut(s) 52, 197, 208
HinfI GANTC 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 5 cut(s) 17, 27, 140, 150, 160
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 3 cut(s) 52, 197, 208
LweI GCATC 1 cut(s) 22
MaeI CTAG 2 cut(s) 17, 150
MaeII ACGT 1 cut(s) 164
MboII GAAGA 3 cut(s) 65, 164, 201
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 5 cut(s) 70, 76, 94, 124, 176
MnlI CCTC 3 cut(s) 49, 146, 194
NdeI CATATG 1 cut(s) 37
NlaIII CATG 3 cut(s) 52, 197, 208
NspI RCATGY 2 cut(s) 197, 208
NspV TTCGAA 1 cut(s) 74
PciI ACATGT 1 cut(s) 193
PfeI GAWTC 1 cut(s) 136
PscI ACATGT 1 cut(s) 193
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 48
SetI ASST 2 cut(s) 148, 167
SfaNI GCATC 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 5 cut(s) 70, 76, 94, 124, 176
SspMI CTAG 2 cut(s) 17, 150
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 74
TasI AATT 5 cut(s) 70, 76, 94, 124, 176
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 136
TscAI CASTG 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 93
VneI GTGCAC 1 cut(s) 44
XapI RAATTY 2 cut(s) 70, 94
XbaI TCTAGA 2 cut(s) 16, 149
XceI RCATGY 2 cut(s) 197, 208
XspI CTAG 2 cut(s) 17, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.