Seed dormancy control
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0125401 |
| rosa_multiflora | Rmu_sc0023345.1_g000001 Rmu_ssc0000189.1_g000022 |
| rosa_roxburghii | Rroxscaffold_1G00030940 Rroxscaffold_1G00030950 Rroxscaffold_2G00117580 |
| rosa_samantha | Rh6AG127100 Rh6BG229300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 22, 57 |
| AciI | CCGC | 5 cut(s) | 17, 101, 119, 134, 201 |
| AcoI | YGGCCR | 1 cut(s) | 272 |
| AcsI | RAATTY | 2 cut(s) | 256, 279 |
| AcyI | GRCGYC | 2 cut(s) | 33, 84 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 13 |
| AjnI | CCWGG | 1 cut(s) | 36 |
| AoxI | GGCC | 2 cut(s) | 74, 272 |
| ApeKI | GCWGC | 1 cut(s) | 41 |
| ApoI | RAATTY | 2 cut(s) | 256, 279 |
| AspLEI | GCGC | 3 cut(s) | 13, 22, 57 |
| AspS9I | GGNCC | 3 cut(s) | 4, 74, 227 |
| AsuC2I | CCSGG | 1 cut(s) | 88 |
| AsuHPI | GGTGA | 2 cut(s) | 124, 154 |
| AvaII | GGWCC | 2 cut(s) | 4, 227 |
| BbvI | GCAGC | 1 cut(s) | 53 |
| BccI | CCATC | 3 cut(s) | 109, 121, 133 |
| BceAI | ACGGC | 1 cut(s) | 257 |
| BciT130I | CCWGG | 1 cut(s) | 38 |
| BcnI | CCSGG | 1 cut(s) | 88 |
| BisI | GCNGC | 4 cut(s) | 18, 42, 102, 201 |
| BlsI | GCNGC | 4 cut(s) | 19, 43, 103, 202 |
| Bme1390I | CCNGG | 2 cut(s) | 38, 88 |
| Bme18I | GGWCC | 2 cut(s) | 4, 227 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 74, 227 |
| BmiI | GGNNCC | 2 cut(s) | 6, 75 |
| BmrFI | CCNGG | 2 cut(s) | 38, 88 |
| BmrI | ACTGGG | 1 cut(s) | 79 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BmuI | ACTGGG | 1 cut(s) | 79 |
| BoxI | GACNNNNGTC | 1 cut(s) | 250 |
| BpuMI | CCSGG | 1 cut(s) | 88 |
| BsaHI | GRCGYC | 2 cut(s) | 33, 84 |
| BsaJI | CCNNGG | 1 cut(s) | 36 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bse1I | ACTGG | 1 cut(s) | 74 |
| Bse3DI | GCAATG | 1 cut(s) | 202 |
| BseBI | CCWGG | 1 cut(s) | 38 |
| BseDI | CCNNGG | 1 cut(s) | 36 |
| BseGI | GGATG | 1 cut(s) | 163 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BseMI | GCAATG | 1 cut(s) | 202 |
| BseMII | CTCAG | 2 cut(s) | 184, 201 |
| BseNI | ACTGG | 1 cut(s) | 74 |
| BseXI | GCAGC | 1 cut(s) | 53 |
| Bsh1236I | CGCG | 2 cut(s) | 22, 57 |
| BshFI | GGCC | 2 cut(s) | 76, 274 |
| BsiSI | CCGG | 1 cut(s) | 87 |
| BslFI | GGGAC | 1 cut(s) | 44 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BsmFI | GGGAC | 1 cut(s) | 44 |
| BsnI | GGCC | 2 cut(s) | 76, 274 |
| BspACI | CCGC | 5 cut(s) | 17, 101, 119, 134, 201 |
| BspANI | GGCC | 2 cut(s) | 76, 274 |
| BspCNI | CTCAG | 2 cut(s) | 183, 200 |
| BspFNI | CGCG | 2 cut(s) | 22, 57 |
| BspLI | GGNNCC | 2 cut(s) | 6, 75 |
| BsrDI | GCAATG | 1 cut(s) | 202 |
| BsrI | ACTGG | 1 cut(s) | 74 |
| BssECI | CCNNGG | 1 cut(s) | 36 |
| BssNI | GRCGYC | 2 cut(s) | 33, 84 |
| Bst2UI | CCWGG | 1 cut(s) | 38 |
| Bst4CI | ACNGT | 1 cut(s) | 249 |
| BstACI | GRCGYC | 2 cut(s) | 33, 84 |
| BstC8I | GCNNGC | 2 cut(s) | 15, 24 |
| BstDEI | CTNAG | 2 cut(s) | 170, 187 |
| BstF5I | GGATG | 1 cut(s) | 163 |
| BstFNI | CGCG | 2 cut(s) | 22, 57 |
| BstHHI | GCGC | 3 cut(s) | 13, 22, 57 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 17, 19, 23, 32, 41, 131 |
| BstNI | CCWGG | 1 cut(s) | 38 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 250 |
| BstSCI | CCNGG | 2 cut(s) | 36, 86 |
| BstUI | CGCG | 2 cut(s) | 22, 57 |
| BstV1I | GCAGC | 1 cut(s) | 53 |
| BsuRI | GGCC | 2 cut(s) | 76, 274 |
| BtgZI | GCGATG | 1 cut(s) | 140 |
| BtsCI | GGATG | 1 cut(s) | 163 |
| BtsIMutI | CAGTG | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 2 cut(s) | 15, 24 |
| CfoI | GCGC | 3 cut(s) | 13, 22, 57 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 74, 227 |
| CseI | GACGC | 2 cut(s) | 41, 92 |
| CviAII | CATG | 1 cut(s) | 270 |
| CviJI | RGCY | 5 cut(s) | 76, 169, 208, 274, 286 |
| CviKI_1 | RGCY | 5 cut(s) | 76, 169, 208, 274, 286 |
| DdeI | CTNAG | 2 cut(s) | 170, 187 |
| EaeI | YGGCCR | 1 cut(s) | 272 |
| EciI | GGCGGA | 2 cut(s) | 134, 149 |
| Eco47I | GGWCC | 2 cut(s) | 4, 227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 74 |
| EcoRII | CCWGG | 1 cut(s) | 36 |
| FaeI | CATG | 1 cut(s) | 273 |
| FaiI | YATR | 1 cut(s) | 271 |
| FaqI | GGGAC | 1 cut(s) | 44 |
| FatI | CATG | 1 cut(s) | 269 |
| Fnu4HI | GCNGC | 4 cut(s) | 18, 42, 102, 201 |
| FokI | GGATG | 1 cut(s) | 170 |
| Fsp4HI | GCNGC | 4 cut(s) | 18, 42, 102, 201 |
| GlaI | GCGC | 3 cut(s) | 12, 21, 56 |
| GluI | GCNGC | 4 cut(s) | 18, 42, 102, 201 |
| HaeIII | GGCC | 2 cut(s) | 76, 274 |
| HapII | CCGG | 1 cut(s) | 87 |
| HgaI | GACGC | 2 cut(s) | 41, 92 |
| HhaI | GCGC | 3 cut(s) | 13, 22, 57 |
| Hin1I | GRCGYC | 2 cut(s) | 33, 84 |
| Hin1II | CATG | 1 cut(s) | 273 |
| Hin6I | GCGC | 3 cut(s) | 11, 20, 55 |
| HinP1I | GCGC | 3 cut(s) | 11, 20, 55 |
| HinfI | GANTC | 2 cut(s) | 180, 215 |
| HpaII | CCGG | 1 cut(s) | 87 |
| HphI | GGTGA | 2 cut(s) | 124, 154 |
| Hpy99I | CGWCG | 2 cut(s) | 86, 249 |
| HpyAV | CCTTC | 2 cut(s) | 88, 100 |
| HpyCH4III | ACNGT | 1 cut(s) | 249 |
| HpyCH4V | TGCA | 1 cut(s) | 176 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 17, 19, 23, 32, 41, 131 |
| HpyF3I | CTNAG | 2 cut(s) | 170, 187 |
| Hsp92I | GRCGYC | 2 cut(s) | 33, 84 |
| Hsp92II | CATG | 1 cut(s) | 273 |
| HspAI | GCGC | 3 cut(s) | 11, 20, 55 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| LpnPI | CCDG | 8 cut(s) | 21, 23, 50, 55, 100, 137, 204, 210 |
| Lsp1109I | GCAGC | 1 cut(s) | 53 |
| LweI | GCATC | 1 cut(s) | 148 |
| MboII | GAAGA | 1 cut(s) | 103 |
| MluCI | AATT | 2 cut(s) | 256, 279 |
| MlyI | GAGTC | 1 cut(s) | 174 |
| MnlI | CCTC | 5 cut(s) | 21, 57, 91, 115, 124 |
| MspI | CCGG | 1 cut(s) | 87 |
| MspR9I | CCNGG | 2 cut(s) | 38, 88 |
| MvaI | CCWGG | 1 cut(s) | 38 |
| MvnI | CGCG | 2 cut(s) | 22, 57 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 17, 19, 23, 32, 41, 131 |
| NciI | CCSGG | 1 cut(s) | 88 |
| NlaIII | CATG | 1 cut(s) | 273 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 75 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 54 |
| PfeI | GAWTC | 1 cut(s) | 215 |
| PkrI | GCNGC | 4 cut(s) | 19, 43, 103, 202 |
| PleI | GAGTC | 1 cut(s) | 174 |
| PpsI | GAGTC | 1 cut(s) | 174 |
| PshAI | GACNNNNGTC | 1 cut(s) | 250 |
| Psp6I | CCWGG | 1 cut(s) | 36 |
| PspGI | CCWGG | 1 cut(s) | 36 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 75 |
| PspPI | GGNCC | 3 cut(s) | 4, 74, 227 |
| SatI | GCNGC | 4 cut(s) | 18, 42, 102, 201 |
| Sau96I | GGNCC | 3 cut(s) | 4, 74, 227 |
| SchI | GAGTC | 1 cut(s) | 174 |
| ScrFI | CCNGG | 2 cut(s) | 38, 88 |
| SetI | ASST | 1 cut(s) | 111 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| SinI | GGWCC | 2 cut(s) | 4, 227 |
| Sse9I | AATT | 2 cut(s) | 256, 279 |
| SsiI | CCGC | 5 cut(s) | 17, 101, 119, 134, 201 |
| StyD4I | CCNGG | 2 cut(s) | 36, 86 |
| TaaI | ACNGT | 1 cut(s) | 249 |
| TaqI | TCGA | 1 cut(s) | 254 |
| TasI | AATT | 2 cut(s) | 256, 279 |
| TauI | GCSGC | 3 cut(s) | 20, 104, 203 |
| TfiI | GAWTC | 1 cut(s) | 215 |
| TscAI | CASTG | 1 cut(s) | 178 |
| TseI | GCWGC | 1 cut(s) | 41 |
| TspRI | CASTG | 1 cut(s) | 178 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 227 |
| XapI | RAATTY | 2 cut(s) | 256, 279 |