Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025164.1

Orthogroup ID

OG0021137

Physical Location & Seq

Genomic Coordinates Reverse (-)

20520 .. 21350

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025164.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgagctctgcaaaagctgcgcttgagagtgacactcgggtgcttgcttttgaagcgggcagaaaaaagagaattcgggtcaacacaatatctgctggtccactaagaagccgtgctgccaaagcaattggattcattgatatgatgattgactattcactagtcaatgcacctctgcaaaaagaactatctgcagaggaggtagggaacacagccgctttcttggcatcacctttggcttctgccatcaccggttctgttatatacgttgataatggcttgaacacaatgggtgtcggagttgacagtccaatttttgagaaacttgacattcccaaggatcagcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005835 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0016631 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

116

Amino Acids

12.32

Weight (kDa)

6.57

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021137)

Species	Orthologous Gene IDs
malus_domestica	MD12G1059400.v1.1 MD14G1058700.v1.1
pyrus_communis	pycom14g04750
rosa_multiflora	Rmu_sc0020711.1_g000005 Rmu_sc0025164.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	56, 216
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	72
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	53, 283
AhlI	ACTAGT	1 cut(s)	160
AleI	CACNNNNGTG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	6, 17
AluI	AGCT	2 cut(s)	6, 17
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	348
Ama87I	CYCGRG	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	17, 116
ApoI	RAATTY	1 cut(s)	72
AsiGI	ACCGGT	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	222, 241
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	4, 103
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	96
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	18, 117, 216
BlsI	GCNGC	3 cut(s)	19, 118, 217
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	98
BmsI	GCATC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	4, 103
BshTI	ACCGGT	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	2 cut(s)	56, 216
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	308
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	45, 58
BstDEI	CTNAG	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 53, 122, 224
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	4, 103
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	45, 58
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	98
CspAI	ACCGGT	1 cut(s)	251
CviJI	RGCY	6 cut(s)	6, 17, 111, 215, 239, 279
CviKI_1	RGCY	6 cut(s)	6, 17, 111, 215, 239, 279
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	336
FaiI	YATR	3 cut(s)	143, 263, 265
FalI	AAGNNNNNCTT	1 cut(s)	38
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	18, 117, 216
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	18, 117, 216
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	18, 117, 216
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	2 cut(s)	82, 304
HindII	GTYRAC	2 cut(s)	82, 304
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	222, 241
Hpy166II	GTNNAC	3 cut(s)	82, 101, 304
Hpy188I	TCNGA	1 cut(s)	299
Hpy8I	GTNNAC	3 cut(s)	82, 101, 304
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	11, 170, 178, 194
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 53, 122, 224
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	267
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	340
LpnPI	CCDG	2 cut(s)	81, 265
Lsp1109I	GCAGC	2 cut(s)	4, 103
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	72, 126, 312
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	3 cut(s)	183, 190, 193
MslI	CAYNNNNRTG	2 cut(s)	38, 140
MspI	CCGG	1 cut(s)	252
MunI	CAATTG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	17, 53, 122, 224
NdeII	GATC	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	29
OliI	CACNNNNGTG	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	132
PinAI	ACCGGT	1 cut(s)	251
PkrI	GCNGC	3 cut(s)	19, 118, 217
Psp124BI	GAGCTC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	196
RseI	CAYNNNNRTG	2 cut(s)	38, 140
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	3 cut(s)	18, 117, 216
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	8, 19, 175, 204, 235, 270
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	2 cut(s)	38, 140
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	3 cut(s)	72, 126, 312
SsiI	CCGC	2 cut(s)	56, 216
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	270
TasI	AATT	3 cut(s)	72, 126, 312
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	17, 116
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	72
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.