Rmu_sc0027521.1_g000002

5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027521.1
OG0021364
Physical Location & Seq
Reverse (-)
3614 .. 3901
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027521.1_g000002.1.cds

Sequence Viewer

Length: 288 bp
atgactacaacaaggtatggaactctacgttccgaagctgaagctgatacgcgtgtacacgagttcttcaaaacttcgtatttcaagactggaatccaaccactcctgggtgctcaggaggcacttcgtaagttgtcagcaagttgtaacatgtcagttgtaactttgcggcaaaacattcttaagcagctgacagttcaatggcttgaagagcattatcctggactgtttcaagggattcactttggcaaccagtatggtcaagatgaatggaaagtccaggcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT5C

Protein Analysis

95

Amino Acids

10.94

Weight (kDa)

7.91

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021364)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117071
rosa_multiflora Rmu_sc0027521.1_g000002
rosa_roxburghii Rroxscaffold_2G00126740
rosa_samantha Rh2BG277900 Rh2DG292200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 52
AciI CCGC 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 107
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 2 cut(s) 50, 150
AgsI TTSAA 5 cut(s) 70, 85, 200, 209, 233
AjnI CCWGG 3 cut(s) 105, 220, 279
AluBI AGCT 3 cut(s) 38, 44, 190
AluI AGCT 3 cut(s) 38, 44, 190
Alw21I GWGCWC 1 cut(s) 115
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 187
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 199
BciT130I CCWGG 3 cut(s) 107, 222, 281
BfrI CTTAAG 1 cut(s) 182
BisI GCNGC 2 cut(s) 170, 188
BlsI GCNGC 2 cut(s) 171, 189
Bme1390I CCNGG 3 cut(s) 107, 222, 281
BmrFI CCNGG 3 cut(s) 107, 222, 281
Bpu10I CCTNAGC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 94, 253
BseBI CCWGG 3 cut(s) 107, 222, 281
BseDI CCNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 94, 253
BseXI GCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 55
BspACI CCGC 1 cut(s) 169
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 204
BspTI CTTAAG 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 55
BsrI ACTGG 2 cut(s) 94, 253
BssECI CCNNGG 1 cut(s) 106
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 3 cut(s) 107, 222, 281
Bst4CI ACNGT 2 cut(s) 196, 228
Bst6I CTCTTC 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 119, 211
BstNI CCWGG 3 cut(s) 107, 222, 281
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 3 cut(s) 105, 220, 279
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 56
CviAII CATG 1 cut(s) 151
CviJI RGCY 5 cut(s) 38, 44, 190, 205, 284
CviKI_1 RGCY 5 cut(s) 38, 44, 190, 205, 284
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 60
EcoRII CCWGG 3 cut(s) 105, 220, 279
FaeI CATG 1 cut(s) 154
FaiI YATR 3 cut(s) 18, 152, 258
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 170, 188
Fsp4HI GCNGC 2 cut(s) 170, 188
GluI GCNGC 2 cut(s) 170, 188
HaeIII GGCC 1 cut(s) 284
Hin1II CATG 1 cut(s) 154
HinfI GANTC 2 cut(s) 93, 238
Hpy166II GTNNAC 2 cut(s) 56, 58
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 3 cut(s) 85, 116, 263
Hpy8I GTNNAC 2 cut(s) 56, 58
HpyCH4III ACNGT 2 cut(s) 196, 228
HpyCH4IV ACGT 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 211
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 1 cut(s) 154
LguI GCTCTTC 1 cut(s) 204
LpnPI CCDG 8 cut(s) 75, 92, 101, 119, 207, 234, 266, 266
Lsp1109I GCAGC 1 cut(s) 199
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 2 cut(s) 146, 160
MboII GAAGA 2 cut(s) 58, 221
MhlI GDGCHC 1 cut(s) 115
MluI ACGCGT 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 1 cut(s) 112
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 190
MspCI CTTAAG 1 cut(s) 182
MspR9I CCNGG 3 cut(s) 107, 222, 281
MvaI CCWGG 3 cut(s) 107, 222, 281
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 119, 211
NlaIII CATG 1 cut(s) 154
NspI RCATGY 1 cut(s) 154
PceI AGGCCT 1 cut(s) 284
PciI ACATGT 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 93, 238
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 2 cut(s) 171, 189
PscI ACATGT 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 105, 220, 279
PspGI CCWGG 3 cut(s) 105, 220, 279
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 170, 188
ScrFI CCNGG 3 cut(s) 107, 222, 281
SduI GDGCHC 1 cut(s) 115
SetI ASST 5 cut(s) 17, 31, 40, 46, 192
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 1 cut(s) 169
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 105, 220, 279
TaaI ACNGT 2 cut(s) 196, 228
TaiI ACGT 1 cut(s) 31
TatI WGTACW 1 cut(s) 55
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 2 cut(s) 93, 238
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 282
Vha464I CTTAAG 1 cut(s) 182
XceI RCATGY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.