Rh2BG277900

5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0021364
Physical Location & Seq
Reverse (-)
30293985 .. 30294845
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG277900.1

Sequence Viewer

Length: 345 bp
ATGACTACAACAAGGTATGGAACTCTACGTTCCGAAGCTGAAGCTGATACGCGTGTACACGAGTTCTTCAAAACTTCGTATTTCAAGACTGGAATCCAACCACTCCTGGGTGCTCAGGAGGCACTTCGAGCAAAGGTTTTAATTGACGACAATCCAAAATATGCAATTGACAGTGCCAAGGTTGGGATTAGGGTAGTTCTACTTTTCGATTATGAGAACTCATATGCATGGTCTAAGACGGAGTCTATTAATCAACCCCCCTTGATCACCAAGGTTCATAAATGGGAAGCAGTGGAGAAGCAGTTAACGGGATTAATACACAAGACTAGTGATCCTTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT5C

Protein Analysis

114

Amino Acids

13.05

Weight (kDa)

7.93

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021364)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117071
rosa_multiflora Rmu_sc0027521.1_g000002
rosa_roxburghii Rroxscaffold_2G00126740
rosa_samantha Rh2BG277900 Rh2DG292200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 52
AclWI GGATC 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 107, 183
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 2 cut(s) 70, 85
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 2 cut(s) 38, 44
AluI AGCT 2 cut(s) 38, 44
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 1 cut(s) 326
AseI ATTAAT 2 cut(s) 249, 314
AsuHPI GGTGA 1 cut(s) 259
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 107
BclI TGATCA 1 cut(s) 264
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 106, 177, 270
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 183
Bse1I ACTGG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 3 cut(s) 106, 177, 270
BseLI CCNNNNNNNGG 2 cut(s) 107, 183
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 107, 183
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 264, 331
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 52
BspPI GGATC 1 cut(s) 326
BsrGI TGTACA 1 cut(s) 55
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 106, 177, 270
BssMI GATC 2 cut(s) 264, 331
BssSI CACGAG 1 cut(s) 59
BssT1I CCWWGG 2 cut(s) 177, 270
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 114, 234
BstFNI CGCG 1 cut(s) 52
BstKTI GATC 2 cut(s) 267, 334
BstMBI GATC 2 cut(s) 264, 331
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstUI CGCG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 178, 297
Csp6I GTAC 1 cut(s) 56
CviAII CATG 1 cut(s) 228
CviJI RGCY 2 cut(s) 38, 44
CviKI_1 RGCY 2 cut(s) 38, 44
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 2 cut(s) 114, 234
DpnI GATC 2 cut(s) 266, 333
DpnII GATC 2 cut(s) 264, 331
Eco130I CCWWGG 2 cut(s) 177, 270
Eco57I CTGAAG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 2 cut(s) 177, 270
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 177, 270
FaeI CATG 1 cut(s) 231
FaiI YATR 7 cut(s) 18, 162, 213, 223, 225, 229, 279
FatI CATG 1 cut(s) 227
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 264
FspBI CTAG 1 cut(s) 327
Hin1II CATG 1 cut(s) 231
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 2 cut(s) 93, 242
HpaI GTTAAC 1 cut(s) 306
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 3 cut(s) 56, 58, 306
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 85, 116
Hpy8I GTNNAC 3 cut(s) 56, 58, 306
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 164, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
HpyF3I CTNAG 2 cut(s) 114, 234
HpySE526I ACGT 1 cut(s) 28
Hsp92II CATG 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 264
KspAI GTTAAC 1 cut(s) 306
Kzo9I GATC 2 cut(s) 264, 331
LpnPI CCDG 4 cut(s) 75, 92, 101, 119
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 28
MalI GATC 2 cut(s) 266, 333
MboI GATC 2 cut(s) 264, 331
MboII GAAGA 1 cut(s) 58
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 141, 165
MluI ACGCGT 1 cut(s) 50
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 4 cut(s) 140, 249, 305, 314
MslI CAYNNNNRTG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NdeI CATATG 1 cut(s) 223
NdeII GATC 2 cut(s) 264, 331
NlaIII CATG 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 229
PfeI GAWTC 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 241
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PshBI ATTAAT 2 cut(s) 249, 314
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PsyI GACNNNGTC 1 cut(s) 241
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 4 cut(s) 140, 249, 305, 314
Sau3AI GATC 2 cut(s) 264, 331
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 115
SetI ASST 7 cut(s) 17, 31, 40, 46, 138, 183, 276
SmiMI CAYNNNNRTG 1 cut(s) 226
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 2 cut(s) 141, 165
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 2 cut(s) 177, 270
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 127, 207
TasI AATT 2 cut(s) 141, 165
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 4 cut(s) 140, 249, 305, 314
Tru9I TTAA 4 cut(s) 140, 249, 305, 314
TscAI CASTG 2 cut(s) 178, 297
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 2 cut(s) 178, 297
Tth111I GACNNNGTC 1 cut(s) 241
VspI ATTAAT 2 cut(s) 249, 314
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.