Rroxscaffold_2G00126740

5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0021364
Physical Location & Seq
Forward (+)
62091117 .. 62092045
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126740.1

Sequence Viewer

Length: 438 bp
ATGTCGGCTCTCAACAGTTTCATTACTGATCGATACTCCTTTTATCATTCTATTTCCTTATACTATGTGTATGACTACAACAAGGTAGGGAACTGTTCCCAAGCTGAAGCTGATACTCGTGTACACGAGTTCTTCAAAACTTCGTATTTCAAGACTGGAATCCAACCACTCCTGGGTGCTCAGGAGGCACCTCGTAAGTTGCAGCAAGTTTTAACATGTCAATCTATAGGAGCAAAGGTTTTGATTGACGACATCCAAAATGCAATTGACAGTGCCAAGGTTGGGATTAGGCTAGGGGTTCTACTTTTCGATTATGAGAACTCACATACTTGGTCTAAGACAGAGTCTATTAATCAACACCCGCTGATCACCAAGGTTCATAACTGGGAAGCAGTGGAGAAGCAGTTAACGGGATTAACACGCACACAAGACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT5C

Protein Analysis

145

Amino Acids

16.59

Weight (kDa)

6.5

Isoelectric Point (pI)

22.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021364)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0117071
rosa_multiflora Rmu_sc0027521.1_g000002
rosa_roxburghii Rroxscaffold_2G00126740
rosa_samantha Rh2BG277900 Rh2DG292200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AciI CCGC 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 173, 282
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 136, 151
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 104, 110
AluI AGCT 2 cut(s) 104, 110
Alw21I GWGCWC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 202
AseI ATTAAT 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 361
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BanI GGYRCC 1 cut(s) 187
BauI CACGAG 2 cut(s) 117, 125
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 173
BclI TGATCA 1 cut(s) 366
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 1 cut(s) 203
BlsI GCNGC 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 394
Bpu10I CCTNAGC 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 31
BsaJI CCNNGG 3 cut(s) 172, 276, 372
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 282
Bse1I ACTGG 2 cut(s) 160, 389
BseBI CCWGG 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 31
BseDI CCNNGG 3 cut(s) 172, 276, 372
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 173, 282
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 160, 389
BseXI GCAGC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 173, 282
Bsp1286I GDGCHC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 2 cut(s) 28, 366
BspACI CCGC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 193
BspDI ATCGAT 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 2 cut(s) 160, 389
BssECI CCNNGG 3 cut(s) 172, 276, 372
BssMI GATC 2 cut(s) 28, 366
BssSI CACGAG 2 cut(s) 117, 125
BssT1I CCWWGG 2 cut(s) 276, 372
Bst2BI CACGAG 2 cut(s) 117, 125
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 3 cut(s) 17, 95, 272
BstAUI TGTACA 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 180, 336
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 2 cut(s) 31, 369
BstMBI GATC 2 cut(s) 28, 366
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 31
BsuTUI ATCGAT 1 cut(s) 31
BtsCI GGATG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 277, 399
ClaI ATCGAT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 122
CviAII CATG 1 cut(s) 216
CviJI RGCY 4 cut(s) 8, 104, 110, 292
CviKI_1 RGCY 4 cut(s) 8, 104, 110, 292
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 2 cut(s) 180, 336
DpnI GATC 2 cut(s) 30, 368
DpnII GATC 2 cut(s) 28, 366
Eco130I CCWWGG 2 cut(s) 276, 372
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 276, 372
ErhI CCWWGG 2 cut(s) 276, 372
FaeI CATG 1 cut(s) 219
FaiI YATR 8 cut(s) 61, 66, 72, 217, 227, 315, 327, 381
FatI CATG 1 cut(s) 215
FauI CCCGC 1 cut(s) 369
FbaI TGATCA 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 203
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 203
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 219
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 2 cut(s) 159, 344
HpaI GTTAAC 1 cut(s) 408
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 3 cut(s) 122, 124, 408
Hpy188III TCNNGA 2 cut(s) 151, 182
Hpy8I GTNNAC 3 cut(s) 122, 124, 408
HpyCH4III ACNGT 3 cut(s) 17, 95, 272
HpyCH4V TGCA 2 cut(s) 202, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 180, 336
Hsp92II CATG 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 366
KspAI GTTAAC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 28, 366
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 5 cut(s) 141, 158, 167, 185, 370
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 1 cut(s) 293
MalI GATC 2 cut(s) 30, 368
MboI GATC 2 cut(s) 28, 366
MboII GAAGA 1 cut(s) 124
MfeI CAATTG 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 1 cut(s) 264
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 2 cut(s) 178, 201
MseI TTAA 4 cut(s) 212, 351, 407, 416
MspA1I CMGCKG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 2 cut(s) 28, 366
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 189
NspI RCATGY 1 cut(s) 219
PciI ACATGT 1 cut(s) 215
PfeI GAWTC 1 cut(s) 159
PflFI GACNNNGTC 1 cut(s) 343
PkrI GCNGC 1 cut(s) 204
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PscI ACATGT 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 189
PsyI GACNNNGTC 1 cut(s) 343
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 4 cut(s) 212, 351, 407, 416
SatI GCNGC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 28, 366
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 181
SetI ASST 7 cut(s) 87, 106, 112, 193, 240, 282, 378
SfcI CTRYAG 1 cut(s) 225
Sse9I AATT 1 cut(s) 264
SsiI CCGC 1 cut(s) 362
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 2 cut(s) 276, 372
TaaI ACNGT 3 cut(s) 17, 95, 272
TaqI TCGA 2 cut(s) 31, 309
TasI AATT 1 cut(s) 264
TatI WGTACW 1 cut(s) 121
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 4 cut(s) 212, 351, 407, 416
Tru9I TTAA 4 cut(s) 212, 351, 407, 416
TscAI CASTG 2 cut(s) 277, 399
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 10, 368
TspRI CASTG 2 cut(s) 277, 399
Tth111I GACNNNGTC 1 cut(s) 343
VspI ATTAAT 1 cut(s) 351
XceI RCATGY 1 cut(s) 219
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.