Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031618.1

Orthogroup ID

OG0016936

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 759

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031618.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 758 bp

atgttgtcacaattgtggtcgtttctaggactcctcacggtcctccagaacgttctgccttcccagctcctctcagtcctccattcattctatcagtctctccaagacatgctcagcccttactcctatctcgacatccccgagttcaacggctactgcggcgtcgacgtcaatgacctctaccgccacgtcaacctctacttgaactcggtgaaccactcgtctgctgcgtccaccggcagctgcccccgactcactctctcacgctccaactcctccacacgcatttccttcaccatcgcagccaaccactccatccgcgactccttcctcggccacagcctgtgctggacccacaacgtcgacaccattcaggactccctggacgaaaagcgcagcttcgtcctcaagctccccaagcgccaccaccacaccatcctccagccctacttggaccacgtaacggcacgtgcgcaggatttcgagcgtgtctcgagggaaagaaggctgttcaccaacaatggccacggctcctacgactccggctgggtctccgtccctttccgtcacccttccacctttgacactctggcactcgagccccaactgaagaagcagctaacggaagatctcaccacgttttccactggaaaagaattttaccacagagtagggcgtgcttggaagcggggctactttctttacggcccacccggctccggaaagtcaagcttgatcgctgccatggccaactatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc Pkinase

Protein Analysis

253

Amino Acids

28.78

Weight (kDa)

8.94

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016936)

Species	Orthologous Gene IDs
malus_domestica	MD02G1319900.v1.1
prunus_persica	Prupe.2G002200_v2.0.a1
pyrus_communis	pycom02g26790
rosa_chinensis	RchiOBHm_Chr1g0313201
rosa_laevigata	RLG00000030816
rosa_multiflora	Rmu_sc0031618.1_g000001 Rmu_sc0031619.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332390
rosa_rugosa	RorugPtG0001400.1
rosa_samantha	Rh1AG001600 Rh1CG003600 Rh1CG006200 Rh1DG001500
rosa_wichuraiana	Rw1G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
Acc16I	TGCGCA	1 cut(s)	474
AccI	GTMKAC	2 cut(s)	165, 363
AccII	CGCG	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	4 cut(s)	159, 184, 319, 688
AclI	AACGTT	1 cut(s)	51
AcoI	YGGCCR	3 cut(s)	334, 523, 747
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	629
AcvI	CACGTG	1 cut(s)	470
AcyI	GRCGYC	2 cut(s)	162, 168
AfiI	CCNNNNNNNGG	2 cut(s)	463, 719
AgsI	TTSAA	2 cut(s)	148, 205
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	381
AleI	CACNNNNGTG	1 cut(s)	13
AluBI	AGCT	6 cut(s)	67, 243, 399, 412, 619, 732
AluI	AGCT	6 cut(s)	67, 243, 399, 412, 619, 732
Alw26I	GTCTC	3 cut(s)	102, 496, 556
Ama87I	CYCGRG	3 cut(s)	140, 493, 596
Aor13HI	TCCGGA	1 cut(s)	719
AoxI	GGCC	4 cut(s)	334, 523, 706, 747
ApeKI	GCWGC	7 cut(s)	227, 240, 243, 302, 396, 616, 740
ApoI	RAATTY	1 cut(s)	656
AspLEI	GCGC	3 cut(s)	396, 423, 475
AspS9I	GGNCC	4 cut(s)	40, 351, 454, 707
AsuC2I	CCSGG	1 cut(s)	714
AsuHPI	GGTGA	5 cut(s)	223, 286, 505, 560, 625
AvaI	CYCGRG	3 cut(s)	140, 493, 596
AvaII	GGWCC	3 cut(s)	40, 351, 454
BalI	TGGCCA	2 cut(s)	525, 749
BanII	GRGCYC	1 cut(s)	603
BarI	GAAGNNNNNNTAC	2 cut(s)	677, 709
BbrPI	CACGTG	1 cut(s)	470
BbvI	GCAGC	7 cut(s)	214, 230, 252, 314, 408, 628, 727
BccI	CCATC	3 cut(s)	305, 323, 443
BceAI	ACGGC	4 cut(s)	166, 480, 544, 721
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	714
BcoDI	GTCTC	3 cut(s)	102, 496, 556
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	424
BglI	GCCNNNNNGGC	1 cut(s)	714
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	8 cut(s)	160, 228, 241, 244, 303, 397, 617, 741
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	8 cut(s)	161, 229, 242, 245, 304, 398, 618, 742
Bme1390I	CCNGG	2 cut(s)	383, 714
Bme18I	GGWCC	3 cut(s)	40, 351, 454
BmeT110I	CYCGRG	3 cut(s)	140, 493, 596
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	4 cut(s)	40, 351, 454, 707
BmiI	GGNNCC	3 cut(s)	353, 532, 718
BmrFI	CCNGG	2 cut(s)	383, 714
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	2 cut(s)	29, 425
Bpu1102I	GCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	714
BsaAI	YACGTR	2 cut(s)	460, 470
BsaHI	GRCGYC	2 cut(s)	162, 168
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	4 cut(s)	331, 381, 526, 744
BsaWI	WCCGGW	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 719
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	652
BseAI	TCCGGA	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	4 cut(s)	331, 381, 526, 744
BseGI	GGATG	3 cut(s)	135, 315, 435
BseLI	CCNNNNNNNGG	2 cut(s)	463, 719
BseMII	CTCAG	2 cut(s)	87, 127
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	3 cut(s)	23, 59, 265
BseXI	GCAGC	7 cut(s)	214, 230, 252, 314, 408, 628, 727
BseYI	CCCAGC	2 cut(s)	63, 546
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	336, 525, 708, 749
BsiHKCI	CYCGRG	3 cut(s)	140, 493, 596
BsiSI	CCGG	4 cut(s)	237, 543, 714, 720
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	2 cut(s)	463, 719
BsmAI	GTCTC	3 cut(s)	102, 496, 556
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	4 cut(s)	336, 525, 708, 749
Bso31I	GGTCTC	1 cut(s)	556
BsoBI	CYCGRG	3 cut(s)	140, 493, 596
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp13I	TCCGGA	1 cut(s)	719
Bsp143I	GATC	2 cut(s)	628, 735
Bsp1720I	GCTNAGC	1 cut(s)	113
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	4 cut(s)	159, 184, 319, 688
BspANI	GGCC	4 cut(s)	336, 525, 708, 749
BspCNI	CTCAG	2 cut(s)	86, 126
BspEI	TCCGGA	1 cut(s)	719
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	353, 532, 718
BspTNI	GGTCTC	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	4 cut(s)	331, 381, 526, 744
BssMI	GATC	2 cut(s)	628, 735
BssNI	GRCGYC	2 cut(s)	162, 168
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	2 cut(s)	162, 168
BstBAI	YACGTR	2 cut(s)	460, 470
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	2 cut(s)	73, 113
BstDSI	CCRYGG	2 cut(s)	526, 744
BstF5I	GGATG	3 cut(s)	135, 315, 435
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	3 cut(s)	396, 423, 475
BstKTI	GATC	2 cut(s)	631, 738
BstMAI	GTCTC	3 cut(s)	102, 496, 556
BstMBI	GATC	2 cut(s)	628, 735
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 159, 418, 714, 746
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	381, 712
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	7 cut(s)	214, 230, 252, 314, 408, 628, 727
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	4 cut(s)	336, 525, 708, 749
BtgI	CCRYGG	2 cut(s)	526, 744
BtgZI	GCGATG	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	135, 315, 435
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	1 cut(s)	678
CfoI	GCGC	3 cut(s)	396, 423, 475
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	4 cut(s)	40, 351, 454, 707
CseI	GACGC	2 cut(s)	151, 219
CviAII	CATG	2 cut(s)	109, 745
DdeI	CTNAG	2 cut(s)	73, 113
DpnI	GATC	2 cut(s)	630, 737
DpnII	GATC	2 cut(s)	628, 735
EaeI	YGGCCR	3 cut(s)	334, 523, 747
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	556
Eco47I	GGWCC	3 cut(s)	40, 351, 454
Eco57I	CTGAAG	1 cut(s)	629
Eco72I	CACGTG	1 cut(s)	470
Eco88I	CYCGRG	3 cut(s)	140, 493, 596
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	2 cut(s)	112, 748
FaiI	YATR	2 cut(s)	110, 746
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 716, 748
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	2 cut(s)	108, 744
FauI	CCCGC	1 cut(s)	681
FblI	GTMKAC	2 cut(s)	165, 363
Fnu4HI	GCNGC	8 cut(s)	160, 228, 241, 244, 303, 397, 617, 741
FokI	GGATG	3 cut(s)	122, 302, 422
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	8 cut(s)	160, 228, 241, 244, 303, 397, 617, 741
FspBI	CTAG	1 cut(s)	26
FspI	TGCGCA	1 cut(s)	474
GlaI	GCGC	3 cut(s)	395, 422, 474
GluI	GCNGC	8 cut(s)	160, 228, 241, 244, 303, 397, 617, 741
GsaI	CCCAGC	2 cut(s)	67, 550
GsuI	CTGGAG	2 cut(s)	29, 425
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	4 cut(s)	336, 525, 708, 749
HapII	CCGG	4 cut(s)	237, 543, 714, 720
HgaI	GACGC	2 cut(s)	151, 219
HhaI	GCGC	3 cut(s)	396, 423, 475
Hin1I	GRCGYC	2 cut(s)	162, 168
Hin1II	CATG	2 cut(s)	112, 748
Hin6I	GCGC	3 cut(s)	394, 421, 473
HinP1I	GCGC	3 cut(s)	394, 421, 473
HincII	GTYRAC	3 cut(s)	166, 193, 364
HindII	GTYRAC	3 cut(s)	166, 193, 364
HindIII	AAGCTT	1 cut(s)	730
HinfI	GANTC	5 cut(s)	30, 252, 323, 377, 539
HpaII	CCGG	4 cut(s)	237, 543, 714, 720
HphI	GGTGA	5 cut(s)	223, 286, 505, 560, 625
Hpy166II	GTNNAC	6 cut(s)	166, 193, 214, 234, 364, 513
Hpy188III	TCNNGA	5 cut(s)	46, 131, 374, 493, 720
Hpy8I	GTNNAC	6 cut(s)	166, 193, 214, 234, 364, 513
Hpy99I	CGWCG	3 cut(s)	167, 170, 365
HpyAV	CCTTC	5 cut(s)	69, 301, 337, 498, 582
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	7 cut(s)	51, 168, 189, 360, 459, 469, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 159, 418, 714, 746
HpyF3I	CTNAG	2 cut(s)	73, 113
HpySE526I	ACGT	7 cut(s)	51, 168, 189, 360, 459, 469, 638
Hsp92I	GRCGYC	2 cut(s)	162, 168
Hsp92II	CATG	2 cut(s)	112, 748
HspAI	GCGC	3 cut(s)	394, 421, 473
Kpn2I	TCCGGA	1 cut(s)	719
Kzo9I	GATC	2 cut(s)	628, 735
LmnI	GCTCC	5 cut(s)	72, 272, 417, 536, 722
Lsp1109I	GCAGC	7 cut(s)	214, 230, 252, 314, 408, 628, 727
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	7 cut(s)	51, 168, 189, 360, 459, 469, 638
MaeIII	GTNAC	3 cut(s)	6, 460, 566
MalI	GATC	2 cut(s)	630, 737
MboI	GATC	2 cut(s)	628, 735
MboII	GAAGA	2 cut(s)	622, 638
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	603
MlsI	TGGCCA	2 cut(s)	525, 749
MluCI	AATT	2 cut(s)	11, 656
MluNI	TGGCCA	2 cut(s)	525, 749
MlyI	GAGTC	5 cut(s)	24, 246, 317, 371, 533
MmeI	TCCRAC	1 cut(s)	294
Mox20I	TGGCCA	2 cut(s)	525, 749
MroI	TCCGGA	1 cut(s)	719
MscI	TGGCCA	2 cut(s)	525, 749
MslI	CAYNNNNRTG	1 cut(s)	13
Msp20I	TGGCCA	2 cut(s)	525, 749
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	4 cut(s)	237, 543, 714, 720
MspR9I	CCNGG	2 cut(s)	383, 714
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	5 cut(s)	64, 159, 418, 714, 746
NciI	CCSGG	1 cut(s)	714
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	2 cut(s)	628, 735
NlaIII	CATG	2 cut(s)	112, 748
NlaIV	GGNNCC	3 cut(s)	353, 532, 718
NmeAIII	GCCGAG	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	6, 566
NsbI	TGCGCA	1 cut(s)	474
NspI	RCATGY	1 cut(s)	112
OliI	CACNNNNGTG	1 cut(s)	13
PaeR7I	CTCGAG	2 cut(s)	493, 596
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 227, 534
PkrI	GCNGC	8 cut(s)	161, 229, 242, 245, 304, 398, 618, 742
PleI	GAGTC	5 cut(s)	24, 246, 317, 371, 533
PmaCI	CACGTG	1 cut(s)	470
PmlI	CACGTG	1 cut(s)	470
PpsI	GAGTC	5 cut(s)	24, 246, 317, 371, 533
Ppu21I	YACGTR	2 cut(s)	460, 470
Psp1406I	AACGTT	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	470
PspFI	CCCAGC	2 cut(s)	63, 546
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	353, 532, 718
PspPI	GGNCC	4 cut(s)	40, 351, 454, 707
PspXI	VCTCGAGB	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	13
SalI	GTCGAC	2 cut(s)	164, 362
SatI	GCNGC	8 cut(s)	160, 228, 241, 244, 303, 397, 617, 741
Sau3AI	GATC	2 cut(s)	628, 735
Sau96I	GGNCC	4 cut(s)	40, 351, 454, 707
SchI	GAGTC	5 cut(s)	24, 246, 317, 371, 533
ScrFI	CCNGG	2 cut(s)	383, 714
SduI	GDGCHC	1 cut(s)	603
Sfr274I	CTCGAG	2 cut(s)	493, 596
SgrDI	CGTCGACG	1 cut(s)	164
SinI	GGWCC	3 cut(s)	40, 351, 454
SlaI	CTCGAG	2 cut(s)	493, 596
SmiMI	CAYNNNNRTG	1 cut(s)	13
SmlI	CTYRAG	3 cut(s)	407, 493, 596
SmoI	CTYRAG	3 cut(s)	407, 493, 596
Sse9I	AATT	2 cut(s)	11, 656
SsiI	CCGC	4 cut(s)	159, 184, 319, 688
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	381, 712
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	7 cut(s)	54, 171, 192, 363, 462, 472, 641
TaqI	TCGA	6 cut(s)	132, 165, 363, 483, 494, 597
TasI	AATT	2 cut(s)	11, 656
TauI	GCSGC	1 cut(s)	162
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	2 cut(s)	6, 566
TseI	GCWGC	7 cut(s)	227, 240, 243, 302, 396, 616, 740
Tsp45I	GTSAC	2 cut(s)	6, 566
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	3 cut(s)	544, 554, 638
TspRI	CASTG	1 cut(s)	652
VpaK11BI	GGWCC	3 cut(s)	40, 351, 454
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	112
XhoI	CTCGAG	2 cut(s)	493, 596
XmiI	GTMKAC	2 cut(s)	165, 363
XspI	CTAG	1 cut(s)	26
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.