Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031619.1

Orthogroup ID

OG0016936

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 543

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 542 bp

cactcgtctgctgcgtccaccggcagctgcccccgactcactctctcacgctccaactcctccacacgcatttccttcaccgtcgcagccaaccactccatccgcgactccttccgcggccacagcctgtgctggacccacaacgtcgacaccgttcaggactccctggacgaaaagcgcagcttcgtcctcaagctccccaagcgccaccaccacaccatcctccagccctacttggaccacgtaacggcacgtgcgcaggatttcgagcgtgtctcgagggaaagaaggctgttcaccaacaatggccacggctcctacgactccggctgggtctccgtccctttccgtcacccttccacctttgacactctggcactcgagccccaactgaagaagcaactaacggaagatctcaccacgttttccactggaaaagaattttaccacagagtagggcgagcttggaagcggggctactttctttacggcccacccggctccggaaagtcaagcttgatcgctgccatggccaactatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc Pkinase

Protein Analysis

181

Amino Acids

20.51

Weight (kDa)

9.89

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016936)

Species	Orthologous Gene IDs
malus_domestica	MD02G1319900.v1.1
prunus_persica	Prupe.2G002200_v2.0.a1
pyrus_communis	pycom02g26790
rosa_chinensis	RchiOBHm_Chr1g0313201
rosa_laevigata	RLG00000030816
rosa_multiflora	Rmu_sc0031618.1_g000001 Rmu_sc0031619.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332390
rosa_rugosa	RorugPtG0001400.1
rosa_samantha	Rh1AG001600 Rh1CG003600 Rh1CG006200 Rh1DG001500
rosa_wichuraiana	Rw1G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	105, 117
AccIII	TCCGGA	1 cut(s)	503
AciI	CCGC	4 cut(s)	103, 115, 117, 472
AcoI	YGGCCR	3 cut(s)	118, 307, 531
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	413
AcvI	CACGTG	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	247, 503
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	5 cut(s)	27, 183, 196, 464, 516
AluI	AGCT	5 cut(s)	27, 183, 196, 464, 516
Alw26I	GTCTC	2 cut(s)	280, 340
Ama87I	CYCGRG	2 cut(s)	277, 380
Aor13HI	TCCGGA	1 cut(s)	503
AoxI	GGCC	4 cut(s)	118, 307, 490, 531
ApeKI	GCWGC	6 cut(s)	11, 24, 27, 86, 180, 524
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	3 cut(s)	180, 207, 259
AspS9I	GGNCC	3 cut(s)	135, 238, 491
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	4 cut(s)	70, 289, 344, 409
AvaI	CYCGRG	2 cut(s)	277, 380
AvaII	GGWCC	2 cut(s)	135, 238
BalI	TGGCCA	2 cut(s)	309, 533
BanII	GRGCYC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
BbrPI	CACGTG	1 cut(s)	254
BbvI	GCAGC	5 cut(s)	14, 36, 98, 192, 511
BccI	CCATC	2 cut(s)	107, 227
BceAI	ACGGC	3 cut(s)	264, 328, 505
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	2 cut(s)	280, 340
BfoI	RGCGCY	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	7 cut(s)	12, 25, 28, 87, 118, 181, 525
BlsI	GCNGC	7 cut(s)	13, 26, 29, 88, 119, 182, 526
Bme1390I	CCNGG	2 cut(s)	167, 498
Bme18I	GGWCC	2 cut(s)	135, 238
BmeT110I	CYCGRG	2 cut(s)	277, 380
BmgT120I	GGNCC	3 cut(s)	135, 238, 491
BmiI	GGNNCC	3 cut(s)	137, 316, 502
BmrFI	CCNGG	2 cut(s)	167, 498
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	498
BsaAI	YACGTR	2 cut(s)	244, 254
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	4 cut(s)	115, 165, 310, 528
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 503
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	436
BseAI	TCCGGA	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	4 cut(s)	115, 165, 310, 528
BseGI	GGATG	2 cut(s)	99, 219
BseLI	CCNNNNNNNGG	2 cut(s)	247, 503
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	5 cut(s)	14, 36, 98, 192, 511
BseYI	CCCAGC	1 cut(s)	330
Bsh1236I	CGCG	2 cut(s)	105, 117
BshFI	GGCC	4 cut(s)	120, 309, 492, 533
BsiHKCI	CYCGRG	2 cut(s)	277, 380
BsiSI	CCGG	4 cut(s)	21, 327, 498, 504
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	247, 503
BsmAI	GTCTC	2 cut(s)	280, 340
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	120, 309, 492, 533
Bso31I	GGTCTC	1 cut(s)	340
BsoBI	CYCGRG	2 cut(s)	277, 380
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp13I	TCCGGA	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	412, 519
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	4 cut(s)	103, 115, 117, 472
BspANI	GGCC	4 cut(s)	120, 309, 492, 533
BspEI	TCCGGA	1 cut(s)	503
BspFNI	CGCG	2 cut(s)	105, 117
BspLI	GGNNCC	3 cut(s)	137, 316, 502
BspTNI	GGTCTC	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	4 cut(s)	115, 165, 310, 528
BssMI	GATC	2 cut(s)	412, 519
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	82, 154
BstBAI	YACGTR	2 cut(s)	244, 254
BstC8I	GCNNGC	1 cut(s)	462
BstDSI	CCRYGG	3 cut(s)	115, 310, 528
BstF5I	GGATG	2 cut(s)	99, 219
BstFNI	CGCG	2 cut(s)	105, 117
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	180, 207, 259
BstKTI	GATC	2 cut(s)	415, 522
BstMAI	GTCTC	2 cut(s)	280, 340
BstMBI	GATC	2 cut(s)	412, 519
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 202, 498, 530
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	165, 496
BstUI	CGCG	2 cut(s)	105, 117
BstV1I	GCAGC	5 cut(s)	14, 36, 98, 192, 511
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	4 cut(s)	120, 309, 492, 533
BtgI	CCRYGG	3 cut(s)	115, 310, 528
BtsCI	GGATG	2 cut(s)	99, 219
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	3 cut(s)	180, 207, 259
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	135, 238, 491
Cfr42I	CCGCGG	1 cut(s)	118
CseI	GACGC	1 cut(s)	3
CviAII	CATG	1 cut(s)	529
DpnI	GATC	2 cut(s)	414, 521
DpnII	GATC	2 cut(s)	412, 519
EaeI	YGGCCR	3 cut(s)	118, 307, 531
Eco130I	CCWWGG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	135, 238
Eco57I	CTGAAG	1 cut(s)	413
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	2 cut(s)	277, 380
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	1 cut(s)	532
FaiI	YATR	1 cut(s)	530
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 500, 532
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	528
FauI	CCCGC	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	7 cut(s)	12, 25, 28, 87, 118, 181, 525
FokI	GGATG	2 cut(s)	86, 206
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	7 cut(s)	12, 25, 28, 87, 118, 181, 525
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	3 cut(s)	179, 206, 258
GluI	GCNGC	7 cut(s)	12, 25, 28, 87, 118, 181, 525
GsaI	CCCAGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	4 cut(s)	120, 309, 492, 533
HapII	CCGG	4 cut(s)	21, 327, 498, 504
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	3 cut(s)	180, 207, 259
Hin1II	CATG	1 cut(s)	532
Hin6I	GCGC	3 cut(s)	178, 205, 257
HinP1I	GCGC	3 cut(s)	178, 205, 257
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	4 cut(s)	36, 107, 161, 323
HpaII	CCGG	4 cut(s)	21, 327, 498, 504
HphI	GGTGA	4 cut(s)	70, 289, 344, 409
Hpy166II	GTNNAC	3 cut(s)	18, 148, 297
Hpy188III	TCNNGA	3 cut(s)	158, 277, 504
Hpy8I	GTNNAC	3 cut(s)	18, 148, 297
Hpy99I	CGWCG	2 cut(s)	86, 149
HpyAV	CCTTC	4 cut(s)	85, 121, 282, 366
HpyCH4III	ACNGT	2 cut(s)	82, 154
HpyCH4IV	ACGT	4 cut(s)	144, 243, 253, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 202, 498, 530
HpySE526I	ACGT	4 cut(s)	144, 243, 253, 422
Hsp92II	CATG	1 cut(s)	532
HspAI	GCGC	3 cut(s)	178, 205, 257
Kpn2I	TCCGGA	1 cut(s)	503
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	412, 519
LmnI	GCTCC	4 cut(s)	56, 201, 320, 506
Lsp1109I	GCAGC	5 cut(s)	14, 36, 98, 192, 511
MaeII	ACGT	4 cut(s)	144, 243, 253, 422
MaeIII	GTNAC	2 cut(s)	244, 350
MalI	GATC	2 cut(s)	414, 521
MboI	GATC	2 cut(s)	412, 519
MboII	GAAGA	2 cut(s)	406, 422
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	2 cut(s)	309, 533
MluCI	AATT	1 cut(s)	440
MluNI	TGGCCA	2 cut(s)	309, 533
MlyI	GAGTC	4 cut(s)	30, 101, 155, 317
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	70, 200, 233, 273
Mox20I	TGGCCA	2 cut(s)	309, 533
MroI	TCCGGA	1 cut(s)	503
MscI	TGGCCA	2 cut(s)	309, 533
Msp20I	TGGCCA	2 cut(s)	309, 533
MspA1I	CMGCKG	2 cut(s)	27, 117
MspI	CCGG	4 cut(s)	21, 327, 498, 504
MspR9I	CCNGG	2 cut(s)	167, 498
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	2 cut(s)	105, 117
MwoI	GCNNNNNNNGC	4 cut(s)	123, 202, 498, 530
NciI	CCSGG	1 cut(s)	498
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	412, 519
NlaIII	CATG	1 cut(s)	532
NlaIV	GGNNCC	3 cut(s)	137, 316, 502
NmuCI	GTSAC	1 cut(s)	350
NsbI	TGCGCA	1 cut(s)	258
PaeR7I	CTCGAG	2 cut(s)	277, 380
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 150, 318
PkrI	GCNGC	7 cut(s)	13, 26, 29, 88, 119, 182, 526
PleI	GAGTC	4 cut(s)	30, 101, 155, 317
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	4 cut(s)	30, 101, 155, 317
Ppu21I	YACGTR	2 cut(s)	244, 254
Psp6I	CCWGG	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	137, 316, 502
PspPI	GGNCC	3 cut(s)	135, 238, 491
PspXI	VCTCGAGB	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	27
SacII	CCGCGG	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	7 cut(s)	12, 25, 28, 87, 118, 181, 525
Sau3AI	GATC	2 cut(s)	412, 519
Sau96I	GGNCC	3 cut(s)	135, 238, 491
SchI	GAGTC	4 cut(s)	30, 101, 155, 317
ScrFI	CCNGG	2 cut(s)	167, 498
SduI	GDGCHC	1 cut(s)	387
Sfr274I	CTCGAG	2 cut(s)	277, 380
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
SinI	GGWCC	2 cut(s)	135, 238
SlaI	CTCGAG	2 cut(s)	277, 380
SmlI	CTYRAG	3 cut(s)	191, 277, 380
SmoI	CTYRAG	3 cut(s)	191, 277, 380
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	4 cut(s)	103, 115, 117, 472
StyD4I	CCNGG	2 cut(s)	165, 496
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	82, 154
TaiI	ACGT	4 cut(s)	147, 246, 256, 425
TaqI	TCGA	4 cut(s)	147, 267, 278, 381
TasI	AATT	1 cut(s)	440
TauI	GCSGC	1 cut(s)	120
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	6 cut(s)	11, 24, 27, 86, 180, 524
Tsp45I	GTSAC	1 cut(s)	350
TspGWI	ACGGA	3 cut(s)	328, 338, 422
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	135, 238
XapI	RAATTY	1 cut(s)	440
XhoI	CTCGAG	2 cut(s)	277, 380
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.