Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016936

Physical Location & Seq

Genomic Coordinates Reverse (-)

66515569 .. 66517732

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGTTGTCACAATTGTGGTCGTTTCTGGGACTCCTCACAGTCCTCCAGAACGTTCTGCCTTCCCAGCTCCTCTCGGTCCTCCATTCATTCTATCAGTCTCTCCAAGACATGCTCAGCCCTTACTCCTATCTCGACATCCCCGAGTTCAACAGCTACTGCGGCGTCGACGTCAATGACCTCTACCGTCACGTCAACCTCTACTTGAACTCGGTGAACCACCCGTCTGCTGCCTCCACCGCCAGCTGCCCCCGACTCACTCTCTCACGCTCCAACTCCTCCACACGCATTTCCTTCACCGTCGCAGCCAACCACTCCATCCGCGACTCCTTCCGCGGCCACAGTCTGTGCTGGACCCACAACGTCGACACCGTTCAGGACTCCCTGGACGAAAAGCGCAGCTTCGTCCTCAAGCTCCCCAAGCGCCACCACCACACCATCCTCCAGCCCTACTTGGACCACGTCACTGCACGTGCGCAGGATTTCGAGCGTGTCTCGAGGGAAAGAAGGCTGCTCACCAACAATGGCCACGGCTCCTACGACTCCGGCTGGGTCTCCGTCCCTTTCCGTCACCCTTCCACCTTTGACACTCTGGCACTGGAGCCCCAACTGAAGAAACAACTAACGGAAGATCTCACCACGTTTTCCACCGGAAAAGAATTTTACCACAGAGTAGGGCGTGCTTGGAAGCGGGGCTACTTTCTTTACGGCCCACCCGGCTCCGGAAAGTCAAGCTTGATCGCTGCCATGGCCAACTATCTCTGCTATGACGTCTACGACCTCGAGCTAACCAAGGTTTCCGACAATTCCGAACTGCGTGCCTTACTCATACAAACGACGAACCGCTCCATCGTAGTGATAGAAGACATCGACTGCTCGGTTGATCTGACGGCGGACAGACTCTCCAAGAGAAGTAGAAAGAGATCATCATCATCATCGCCCATGCCCACCAAGGTCGACGAGGACGACGGGCGGCGTGTGACGCTGTCGGGGCTTCTCAACTTCACCGACGGGCTCTGGTCATGTTGTGGAGAAGAGAGGATCATAGTATTCACCACCAACCACAGAGAAAACGTGGACCCGGCGCTACTCCGCTGCGGACGCATGGACGTGCACGTCAGCCTCGGAGCGTGCGGGGCTCACGCCTTTAGGGCCTTAGTAAAGAACTATCTGGGGCTGGACTCCCACCCGCTTTTCGAGGCGGTGGACAGTTGTGTGAGGTCGGGTGGTGCTCTGACGCCGGCACAGGTTGGGGAGATTTTGCTCCGAAACCGTGGTGATGCAAACTTGGCACTCAAGGAGGTGGTGTCGGCCATGCAGGGAAGGATTTTGGGTGGCGGGGTCCGAGACTTGACCACAGACTCCGAGGCGGAGACACAAACACTCTTGTTGCGTTCTCCAGAAAGCGTGCTGGTGGGTGGTGGGTCTCCGGATAATTGGGTGTCCTCGTCGTCGCCGGGGAGGAAGAAAAGGGTCAAGTTCTTAGTGAGGCTGAGGTCTTTAACCAAGTCGGACTCCGTAAGAAGGGGGTATGATCTGTACGTGCCTCTCTCTTGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc Pkinase

Protein Analysis

519

Amino Acids

57.85

Weight (kDa)

8.67

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	19 - 120	1.8e-16	Domain associated at C-terminal with AAA
AAA	PF00004	233 - 374	1.5e-13	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	377 - 439	5e-12	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016936)

Species	Orthologous Gene IDs
malus_domestica	MD02G1319900.v1.1
prunus_persica	Prupe.2G002200_v2.0.a1
pyrus_communis	pycom02g26790
rosa_chinensis	RchiOBHm_Chr1g0313201
rosa_laevigata	RLG00000030816
rosa_multiflora	Rmu_sc0031618.1_g000001 Rmu_sc0031619.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332390
rosa_rugosa	RorugPtG0001400.1
rosa_samantha	Rh1AG001600 Rh1CG003600 Rh1CG006200 Rh1DG001500
rosa_wichuraiana	Rw1G000070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1112
AatII	GACGTC	2 cut(s)	171, 771
Acc16I	TGCGCA	1 cut(s)	474
AccBSI	CCGCTC	1 cut(s)	843
AccI	GTMKAC	4 cut(s)	165, 363, 771, 954
AccII	CGCG	2 cut(s)	321, 333
AccIII	TCCGGA	2 cut(s)	719, 1426
AclI	AACGTT	1 cut(s)	51
AclWI	GGATC	1 cut(s)	1046
AcoI	YGGCCR	4 cut(s)	334, 523, 747, 1308
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	629
AcvI	CACGTG	1 cut(s)	470
AcyI	GRCGYC	4 cut(s)	162, 168, 768, 1235
AfaI	GTAC	1 cut(s)	1538
AfiI	CCNNNNNNNGG	2 cut(s)	719, 1521
AgsI	TTSAA	2 cut(s)	148, 205
AjiI	CACGTC	4 cut(s)	190, 460, 1108, 1114
AjnI	CCWGG	1 cut(s)	381
AleI	CACNNNNGTG	1 cut(s)	13
AluBI	AGCT	7 cut(s)	67, 153, 243, 399, 412, 732, 784
AluI	AGCT	7 cut(s)	67, 153, 243, 399, 412, 732, 784
Alw21I	GWGCWC	2 cut(s)	1113, 1231
Alw26I	GTCTC	6 cut(s)	102, 496, 556, 1338, 1364, 1428
Alw44I	GTGCAC	1 cut(s)	1109
AlwI	GGATC	1 cut(s)	1046
AlwNI	CAGNNNCTG	1 cut(s)	156
Ama87I	CYCGRG	3 cut(s)	140, 493, 779
Aor13HI	TCCGGA	2 cut(s)	719, 1426
AoxI	GGCC	6 cut(s)	334, 523, 706, 747, 1149, 1308
ApaLI	GTGCAC	1 cut(s)	1109
ApeKI	GCWGC	7 cut(s)	227, 243, 302, 396, 508, 740, 1092
ApoI	RAATTY	1 cut(s)	656
AspLEI	GCGC	4 cut(s)	396, 423, 475, 1084
AspS9I	GGNCC	7 cut(s)	76, 351, 454, 707, 1075, 1149, 1339
AsuC2I	CCSGG	3 cut(s)	714, 1079, 1455
AsuHPI	GGTGA	8 cut(s)	223, 286, 505, 560, 625, 994, 1042, 1286
AvaI	CYCGRG	3 cut(s)	140, 493, 779
AvaII	GGWCC	5 cut(s)	76, 351, 454, 1075, 1339
BaeGI	GKGCMC	1 cut(s)	1113
BalI	TGGCCA	2 cut(s)	525, 749
BanII	GRGCYC	3 cut(s)	603, 1014, 1138
BarI	GAAGNNNNNNTAC	2 cut(s)	677, 709
BbrPI	CACGTG	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	867
Bbv12I	GWGCWC	2 cut(s)	1113, 1231
BbvCI	CCTCAGC	1 cut(s)	1490
BbvI	GCAGC	7 cut(s)	214, 230, 314, 408, 495, 727, 1079
BccI	CCATC	3 cut(s)	323, 443, 854
BceAI	ACGGC	3 cut(s)	544, 721, 903
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	3 cut(s)	714, 1079, 1455
BcoDI	GTCTC	6 cut(s)	102, 496, 556, 1338, 1364, 1428
BfoI	RGCGCY	2 cut(s)	424, 1085
BglI	GCCNNNNNGGC	2 cut(s)	714, 1148
BglII	AGATCT	1 cut(s)	628
BlpI	GCTNAGC	1 cut(s)	113
Bme1390I	CCNGG	4 cut(s)	383, 714, 1079, 1455
Bme18I	GGWCC	5 cut(s)	76, 351, 454, 1075, 1339
BmeT110I	CYCGRG	3 cut(s)	140, 493, 779
BmgBI	CACGTC	4 cut(s)	190, 460, 1108, 1114
BmgT120I	GGNCC	7 cut(s)	76, 351, 454, 707, 1075, 1149, 1339
BmiI	GGNNCC	6 cut(s)	353, 532, 600, 718, 1077, 1340
BmrFI	CCNGG	4 cut(s)	383, 714, 1079, 1455
BmsI	GCATC	1 cut(s)	1267
BpiI	GAAGAC	1 cut(s)	867
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	4 cut(s)	29, 425, 617, 1380
Bpu10I	CCTNAGC	1 cut(s)	1490
Bpu1102I	GCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	2 cut(s)	392, 1277
BpuMI	CCSGG	3 cut(s)	714, 1079, 1455
BsaAI	YACGTR	2 cut(s)	470, 1540
BsaBI	GATNNNNATC	1 cut(s)	925
BsaHI	GRCGYC	4 cut(s)	162, 168, 768, 1235
BsaI	GGTCTC	2 cut(s)	556, 1428
BsaWI	WCCGGW	3 cut(s)	647, 719, 1426
BsaXI	ACNNNNNCTCC	4 cut(s)	884, 914, 1289, 1319
Bsc4I	CCNNNNNNNGG	2 cut(s)	719, 1521
Bse118I	RCCGGY	1 cut(s)	1237
Bse1I	ACTGG	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	925
BseAI	TCCGGA	2 cut(s)	719, 1426
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	3 cut(s)	135, 315, 435
BseJI	GATNNNNATC	1 cut(s)	925
BseLI	CCNNNNNNNGG	2 cut(s)	719, 1521
BseMII	CTCAG	2 cut(s)	127, 1481
BseNI	ACTGG	1 cut(s)	600
BseRI	GAGGAG	3 cut(s)	23, 59, 265
BseSI	GKGCMC	1 cut(s)	1113
BseXI	GCAGC	7 cut(s)	214, 230, 314, 408, 495, 727, 1079
BseYI	CCCAGC	2 cut(s)	63, 546
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	2 cut(s)	321, 333
BshFI	GGCC	6 cut(s)	336, 525, 708, 749, 1151, 1310
BsiHKAI	GWGCWC	2 cut(s)	1113, 1231
BsiHKCI	CYCGRG	3 cut(s)	140, 493, 779
BsiSI	CCGG	8 cut(s)	543, 648, 714, 720, 1079, 1238, 1427, 1454
BslFI	GGGAC	2 cut(s)	42, 542
BslI	CCNNNNNNNGG	2 cut(s)	719, 1521
BsmAI	GTCTC	6 cut(s)	102, 496, 556, 1338, 1364, 1428
BsmFI	GGGAC	2 cut(s)	42, 542
BsnI	GGCC	6 cut(s)	336, 525, 708, 749, 1151, 1310
Bso31I	GGTCTC	2 cut(s)	556, 1428
BsoBI	CYCGRG	3 cut(s)	140, 493, 779
Bsp1286I	GDGCHC	5 cut(s)	603, 1014, 1113, 1138, 1231
Bsp13I	TCCGGA	2 cut(s)	719, 1426
Bsp143I	GATC	6 cut(s)	628, 735, 880, 920, 1038, 1531
Bsp1720I	GCTNAGC	1 cut(s)	113
Bsp19I	CCATGG	1 cut(s)	744
BspANI	GGCC	6 cut(s)	336, 525, 708, 749, 1151, 1310
BspCNI	CTCAG	2 cut(s)	126, 1482
BspEI	TCCGGA	2 cut(s)	719, 1426
BspFNI	CGCG	2 cut(s)	321, 333
BspLI	GGNNCC	6 cut(s)	353, 532, 600, 718, 1077, 1340
BspPI	GGATC	1 cut(s)	1046
BspTNI	GGTCTC	2 cut(s)	556, 1428
BsrBI	CCGCTC	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	1237
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	1237
BssMI	GATC	6 cut(s)	628, 735, 880, 920, 1038, 1531
BssNI	GRCGYC	4 cut(s)	162, 168, 768, 1235
BssT1I	CCWWGG	3 cut(s)	744, 789, 948
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	7 cut(s)	40, 185, 298, 341, 370, 1208, 1271
Bst6I	CTCTTC	1 cut(s)	1026
BstACI	GRCGYC	4 cut(s)	162, 168, 768, 1235
BstBAI	YACGTR	2 cut(s)	470, 1540
BstC8I	GCNNGC	6 cut(s)	241, 678, 816, 1129, 1239, 1406
BstDEI	CTNAG	4 cut(s)	113, 1153, 1480, 1490
BstDSI	CCRYGG	4 cut(s)	331, 526, 744, 1270
BstF5I	GGATG	3 cut(s)	135, 315, 435
BstFNI	CGCG	2 cut(s)	321, 333
BstH2I	RGCGCY	2 cut(s)	424, 1085
BstHHI	GCGC	4 cut(s)	396, 423, 475, 1084
BstKTI	GATC	6 cut(s)	631, 738, 883, 923, 1041, 1534
BstMAI	GTCTC	6 cut(s)	102, 496, 556, 1338, 1364, 1428
BstMBI	GATC	6 cut(s)	628, 735, 880, 920, 1038, 1531
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	4 cut(s)	381, 712, 1077, 1453
BstSLI	GKGCMC	1 cut(s)	1113
BstUI	CGCG	2 cut(s)	321, 333
BstV1I	GCAGC	7 cut(s)	214, 230, 314, 408, 495, 727, 1079
BstV2I	GAAGAC	1 cut(s)	867
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	6 cut(s)	336, 525, 708, 749, 1151, 1310
BtgI	CCRYGG	4 cut(s)	331, 526, 744, 1270
BtgZI	GCGATG	1 cut(s)	918
BtrI	CACGTC	4 cut(s)	190, 460, 1108, 1114
BtsCI	GGATG	3 cut(s)	135, 315, 435
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	462, 593
Cac8I	GCNNGC	6 cut(s)	241, 678, 816, 1129, 1239, 1406
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	4 cut(s)	396, 423, 475, 1084
Cfr10I	RCCGGY	1 cut(s)	1237
Cfr13I	GGNCC	7 cut(s)	76, 351, 454, 707, 1075, 1149, 1339
Cfr42I	CCGCGG	1 cut(s)	334
CseI	GACGC	4 cut(s)	151, 988, 1107, 1243
Csp6I	GTAC	1 cut(s)	1537
CviAII	CATG	6 cut(s)	109, 745, 940, 1020, 1102, 1312
CviQI	GTAC	1 cut(s)	1537
DdeI	CTNAG	4 cut(s)	113, 1153, 1480, 1490
DpnI	GATC	6 cut(s)	630, 737, 882, 922, 1040, 1533
DpnII	GATC	6 cut(s)	628, 735, 880, 920, 1038, 1531
DrdI	GACNNNNNNGTC	1 cut(s)	1112
DseDI	GACNNNNNNGTC	1 cut(s)	1112
EaeI	YGGCCR	4 cut(s)	334, 523, 747, 1308
Eam1104I	CTCTTC	1 cut(s)	1026
EarI	CTCTTC	1 cut(s)	1026
EciI	GGCGGA	2 cut(s)	905, 1382
Eco130I	CCWWGG	3 cut(s)	744, 789, 948
Eco24I	GRGCYC	3 cut(s)	603, 1014, 1138
Eco31I	GGTCTC	2 cut(s)	556, 1428
Eco47I	GGWCC	5 cut(s)	76, 351, 454, 1075, 1339
Eco57I	CTGAAG	1 cut(s)	629
Eco72I	CACGTG	1 cut(s)	470
Eco88I	CYCGRG	3 cut(s)	140, 493, 779
EcoO109I	RGGNCCY	1 cut(s)	1149
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	3 cut(s)	744, 789, 948
EcoT38I	GRGCYC	3 cut(s)	603, 1014, 1138
ErhI	CCWWGG	3 cut(s)	744, 789, 948
FaeI	CATG	6 cut(s)	112, 748, 943, 1023, 1105, 1315
FalI	AAGNNNNNCTT	4 cut(s)	383, 415, 716, 748
FaqI	GGGAC	2 cut(s)	42, 542
FatI	CATG	6 cut(s)	108, 744, 939, 1019, 1101, 1311
FauI	CCCGC	4 cut(s)	681, 1124, 1194, 1328
FblI	GTMKAC	4 cut(s)	165, 363, 771, 954
FokI	GGATG	3 cut(s)	122, 302, 422
FriOI	GRGCYC	3 cut(s)	603, 1014, 1138
FspI	TGCGCA	1 cut(s)	474
GlaI	GCGC	4 cut(s)	395, 422, 474, 1083
GsaI	CCCAGC	2 cut(s)	67, 550
GsuI	CTGGAG	4 cut(s)	29, 425, 617, 1380
HaeII	RGCGCY	2 cut(s)	424, 1085
HaeIII	GGCC	6 cut(s)	336, 525, 708, 749, 1151, 1310
HapII	CCGG	8 cut(s)	543, 648, 714, 720, 1079, 1238, 1427, 1454
HgaI	GACGC	4 cut(s)	151, 988, 1107, 1243
HhaI	GCGC	4 cut(s)	396, 423, 475, 1084
Hin1I	GRCGYC	4 cut(s)	162, 168, 768, 1235
Hin1II	CATG	6 cut(s)	112, 748, 943, 1023, 1105, 1315
Hin6I	GCGC	4 cut(s)	394, 421, 473, 1082
HinP1I	GCGC	4 cut(s)	394, 421, 473, 1082
HincII	GTYRAC	4 cut(s)	166, 193, 364, 955
HindII	GTYRAC	4 cut(s)	166, 193, 364, 955
HindIII	AAGCTT	1 cut(s)	730
HinfI	GANTC	9 cut(s)	30, 252, 323, 377, 539, 897, 1178, 1358, 1511
HpaII	CCGG	8 cut(s)	543, 648, 714, 720, 1079, 1238, 1427, 1454
HphI	GGTGA	8 cut(s)	223, 286, 505, 560, 625, 994, 1042, 1286
Hpy166II	GTNNAC	9 cut(s)	166, 193, 214, 364, 772, 955, 1075, 1111, 1204
Hpy188I	TCNGA	9 cut(s)	799, 808, 885, 1124, 1233, 1265, 1343, 1363, 1510
Hpy188III	TCNNGA	7 cut(s)	46, 131, 374, 493, 720, 1397, 1427
Hpy8I	GTNNAC	9 cut(s)	166, 193, 214, 364, 772, 955, 1075, 1111, 1204
HpyAV	CCTTC	7 cut(s)	69, 301, 337, 498, 582, 1314, 1515
HpyCH4III	ACNGT	7 cut(s)	40, 185, 298, 341, 370, 1208, 1271
HpyCH4V	TGCA	4 cut(s)	467, 1111, 1280, 1315
HpyF3I	CTNAG	4 cut(s)	113, 1153, 1480, 1490
Hsp92I	GRCGYC	4 cut(s)	162, 168, 768, 1235
Hsp92II	CATG	6 cut(s)	112, 748, 943, 1023, 1105, 1315
HspAI	GCGC	4 cut(s)	394, 421, 473, 1082
Kpn2I	TCCGGA	2 cut(s)	719, 1426
KroI	GCCGGC	1 cut(s)	1237
KroNI	GCCGGC	1 cut(s)	1239
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	628, 735, 880, 920, 1038, 1531
LmnI	GCTCC	9 cut(s)	72, 272, 417, 536, 598, 722, 848, 1124, 1266
Lsp1109I	GCAGC	7 cut(s)	214, 230, 314, 408, 495, 727, 1079
LweI	GCATC	1 cut(s)	1267
MaeIII	GTNAC	5 cut(s)	6, 185, 460, 566, 976
MalI	GATC	6 cut(s)	630, 737, 882, 922, 1040, 1533
MbiI	CCGCTC	1 cut(s)	843
MboI	GATC	6 cut(s)	628, 735, 880, 920, 1038, 1531
MboII	GAAGA	5 cut(s)	622, 638, 872, 1043, 1474
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	5 cut(s)	603, 1014, 1113, 1138, 1231
MlsI	TGGCCA	2 cut(s)	525, 749
MluCI	AATT	4 cut(s)	11, 656, 802, 1432
MluNI	TGGCCA	2 cut(s)	525, 749
MlyI	GAGTC	9 cut(s)	24, 246, 317, 371, 533, 891, 1172, 1352, 1505
MmeI	TCCRAC	3 cut(s)	294, 822, 1488
Mox20I	TGGCCA	2 cut(s)	525, 749
MroI	TCCGGA	2 cut(s)	719, 1426
MroNI	GCCGGC	1 cut(s)	1237
MscI	TGGCCA	2 cut(s)	525, 749
MseI	TTAA	2 cut(s)	1499, 1558
MslI	CAYNNNNRTG	3 cut(s)	13, 851, 1106
Msp20I	TGGCCA	2 cut(s)	525, 749
MspA1I	CMGCKG	3 cut(s)	243, 333, 1092
MspI	CCGG	8 cut(s)	543, 648, 714, 720, 1079, 1238, 1427, 1454
MspR9I	CCNGG	4 cut(s)	383, 714, 1079, 1455
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	2 cut(s)	321, 333
NaeI	GCCGGC	1 cut(s)	1239
NciI	CCSGG	3 cut(s)	714, 1079, 1455
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	6 cut(s)	628, 735, 880, 920, 1038, 1531
NgoMIV	GCCGGC	1 cut(s)	1237
NlaIII	CATG	6 cut(s)	112, 748, 943, 1023, 1105, 1315
NlaIV	GGNNCC	6 cut(s)	353, 532, 600, 718, 1077, 1340
NmuCI	GTSAC	5 cut(s)	6, 185, 460, 566, 976
NsbI	TGCGCA	1 cut(s)	474
NspI	RCATGY	1 cut(s)	112
OliI	CACNNNNGTG	1 cut(s)	13
PaeR7I	CTCGAG	2 cut(s)	493, 779
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 366, 534, 960
PdiI	GCCGGC	1 cut(s)	1239
PflFI	GACNNNGTC	2 cut(s)	458, 982
PleI	GAGTC	9 cut(s)	24, 246, 317, 371, 533, 891, 1172, 1352, 1505
PmaCI	CACGTG	1 cut(s)	470
PmlI	CACGTG	1 cut(s)	470
PpsI	GAGTC	9 cut(s)	24, 246, 317, 371, 533, 891, 1172, 1352, 1505
Ppu21I	YACGTR	2 cut(s)	470, 1540
Psp1406I	AACGTT	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	470
PspFI	CCCAGC	2 cut(s)	63, 546
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	6 cut(s)	353, 532, 600, 718, 1077, 1340
PspPI	GGNCC	7 cut(s)	76, 351, 454, 707, 1075, 1149, 1339
PspXI	VCTCGAGB	1 cut(s)	779
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	628
PsyI	GACNNNGTC	2 cut(s)	458, 982
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	1538
RsaNI	GTAC	1 cut(s)	1537
RseI	CAYNNNNRTG	3 cut(s)	13, 851, 1106
SacII	CCGCGG	1 cut(s)	334
SalI	GTCGAC	3 cut(s)	164, 362, 953
SaqAI	TTAA	2 cut(s)	1499, 1558
Sau3AI	GATC	6 cut(s)	628, 735, 880, 920, 1038, 1531
Sau96I	GGNCC	7 cut(s)	76, 351, 454, 707, 1075, 1149, 1339
SchI	GAGTC	9 cut(s)	24, 246, 317, 371, 533, 891, 1172, 1352, 1505
ScrFI	CCNGG	4 cut(s)	383, 714, 1079, 1455
SduI	GDGCHC	5 cut(s)	603, 1014, 1113, 1138, 1231
SfaNI	GCATC	1 cut(s)	1267
Sfr274I	CTCGAG	2 cut(s)	493, 779
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SgrDI	CGTCGACG	1 cut(s)	164
SinI	GGWCC	5 cut(s)	76, 351, 454, 1075, 1339
SlaI	CTCGAG	2 cut(s)	493, 779
SmiMI	CAYNNNNRTG	3 cut(s)	13, 851, 1106
SmlI	CTYRAG	4 cut(s)	407, 493, 779, 1292
SmoI	CTYRAG	4 cut(s)	407, 493, 779, 1292
Sse9I	AATT	4 cut(s)	11, 656, 802, 1432
StyD4I	CCNGG	4 cut(s)	381, 712, 1077, 1453
StyI	CCWWGG	3 cut(s)	744, 789, 948
TaaI	ACNGT	7 cut(s)	40, 185, 298, 341, 370, 1208, 1271
TaqI	TCGA	9 cut(s)	132, 165, 363, 483, 494, 780, 867, 954, 1194
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	4 cut(s)	11, 656, 802, 1432
TauI	GCSGC	3 cut(s)	162, 336, 973
Tru1I	TTAA	2 cut(s)	1499, 1558
Tru9I	TTAA	2 cut(s)	1499, 1558
TscAI	CASTG	2 cut(s)	469, 600
TseFI	GTSAC	5 cut(s)	6, 185, 460, 566, 976
TseI	GCWGC	7 cut(s)	227, 243, 302, 396, 508, 740, 1092
Tsp45I	GTSAC	5 cut(s)	6, 185, 460, 566, 976
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	4 cut(s)	544, 554, 638, 1504
TspRI	CASTG	2 cut(s)	469, 600
Tth111I	GACNNNGTC	2 cut(s)	458, 982
VneI	GTGCAC	1 cut(s)	1109
VpaK11BI	GGWCC	5 cut(s)	76, 351, 454, 1075, 1339
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	112
XhoI	CTCGAG	2 cut(s)	493, 779
XmiI	GTMKAC	4 cut(s)	165, 363, 771, 954
ZraI	GACGTC	2 cut(s)	169, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.