Rmu_sc0033954.1_g000001

Nitroreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033954.1
OG0012061
Physical Location & Seq
Forward (+)
1 .. 1000
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033954.1_g000001.1.cds

Sequence Viewer

Length: 1000 bp
ctgggtcttcgccgatttgcttcccaaaggctcgtttctggtcggactatcgtcgattttttggcgggaagcttggaagtatggggagcgggctttccggtattgtaaccacgatgtgggccatgctattgcggcggttgctgtggcggcggcggagctgggttgggatgtgaagatacttgatgggttggggtatgaggatttggagaagcttatggggcttgagatgttgccacatttcgaaattccggctcgggctgtgaaggggaggcttcccgagatggaattcgagcacccggattgtgttctggtggtttttcctagtggaggtggtgggtttgaggtggattatgagaagttgagcttggcgatttcggagttttcgaagttggagtggaaggggaagccgaatgtgcttagtaaagagcatatatgttgggatgtgatatatagaacggctgaggctgtgaagaaagagagggatttaggaggtaggttttcggttgatgcgtttcggagtagtgggagttgtagtgagggttcgtataagggttttacggttagggaggttgttaggaagcggaggagtgctgtggatatggatggagttactgtaatggagagagagacgttttatcagattcttttgcattgtcttccttcgggaagtggagggaagcagaagcggcagctggcattgccgtttcgggctctttcgtgggatgctgaagtccatgctgctttgtttgttcatagggtgaagggactgccggagggattgtatttcttggtgaggaatgaggatcattttgatgagctcaagaaatctatgaggtctgggtttaagtgggtgaaacctcaggggtgcccggaaggtcttcccctgtacgaactgcatagaactgattgtcgggctattgctgaaaagctctcgtgccatcaggtgtgccaaccttctaattgtttgtttattttgaattttcgtacatcaatagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nitroreductase

Protein Analysis

332

Amino Acids

37.58

Weight (kDa)

6.9

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02020 AT1G02020 AT1G02020
fragaria_vesca FvH4_7g11430 FvH4_7g11430
malus_domestica MD07G1119000.v1.1
prunus_persica Prupe.2G142200_v2.0.a1
pyrus_communis pycom07g10560
rosa_chinensis RchiOBHm_Chr1g0349711
rosa_laevigata RLG00000028532
rosa_multiflora Rmu_sc0004624.1_g000015 Rmu_sc0033954.1_g000001
rosa_roxburghii Rroxscaffold_4G00305360
rosa_rugosa Rorug01G0205500
rosa_samantha Rh1AG222800 Rh1BG188900 Rh1CG207500 Rh1DG218000
rosa_wichuraiana Rw1G019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 865
AccB7I CCANNNNNTGG 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 9 cut(s) 65, 89, 132, 135, 147, 150, 153, 581, 686
AclWI GGATC 1 cut(s) 811
AcsI RAATTY 3 cut(s) 244, 285, 977
AcuI CTGAAG 1 cut(s) 748
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 2 cut(s) 888, 986
AfiI CCNNNNNNNGG 2 cut(s) 116, 327
AgsI TTSAA 1 cut(s) 977
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AluBI AGCT 7 cut(s) 72, 158, 212, 364, 692, 818, 929
AluI AGCT 7 cut(s) 72, 158, 212, 364, 692, 818, 929
Alw21I GWGCWC 2 cut(s) 295, 820
Alw26I GTCTC 1 cut(s) 621
AlwI GGATC 1 cut(s) 811
Ama87I CYCGRG 2 cut(s) 253, 276
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 689, 738
ApoI RAATTY 3 cut(s) 244, 285, 977
Asp700I GAANNNNTTC 1 cut(s) 877
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 2 cut(s) 297, 870
AsuHPI GGTGA 3 cut(s) 770, 803, 863
AsuII TTCGAA 2 cut(s) 241, 384
AvaI CYCGRG 2 cut(s) 253, 276
AxyI CCTNAGG 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 870
BanI GGYRCC 1 cut(s) 865
BanII GRGCYC 2 cut(s) 713, 820
BauI CACGAG 1 cut(s) 932
BbsI GAAGAC 2 cut(s) 648, 870
Bbv12I GWGCWC 2 cut(s) 295, 820
BbvCI CCTCAGC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 701, 725
BccI CCATC 4 cut(s) 177, 275, 597, 946
BceAI ACGGC 2 cut(s) 472, 686
BcnI CCSGG 2 cut(s) 297, 870
BcoDI GTCTC 1 cut(s) 621
BfaI CTAG 1 cut(s) 322
BisI GCNGC 6 cut(s) 133, 148, 151, 687, 690, 739
BlsI GCNGC 6 cut(s) 134, 149, 152, 688, 691, 740
Bme1390I CCNGG 2 cut(s) 297, 870
BmeT110I CYCGRG 2 cut(s) 253, 276
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 867
BmrFI CCNGG 2 cut(s) 297, 870
BmsI GCATC 2 cut(s) 497, 713
BoxI GACNNNNGTC 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 648, 870
Bpu10I CCTNAGC 1 cut(s) 460
Bpu14I TTCGAA 2 cut(s) 241, 384
BpuEI CTTGAG 2 cut(s) 243, 804
BpuMI CCSGG 2 cut(s) 297, 870
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 6 cut(s) 518, 548, 598, 628, 765, 795
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 327
Bse21I CCTNAGG 1 cut(s) 859
Bse3DI GCAATG 1 cut(s) 696
BseGI GGATG 4 cut(s) 173, 446, 608, 728
BseLI CCNNNNNNNGG 2 cut(s) 116, 327
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 2 cut(s) 451, 873
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 870
BseXI GCAGC 2 cut(s) 701, 725
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 865
BsiHKAI GWGCWC 2 cut(s) 295, 820
BsiHKCI CYCGRG 2 cut(s) 253, 276
BsiSI CCGG 5 cut(s) 98, 249, 297, 771, 870
BslFI GGGAC 1 cut(s) 778
BslI CCNNNNNNNGG 2 cut(s) 116, 327
BsmAI GTCTC 1 cut(s) 621
BsmBI CGTCTC 1 cut(s) 621
BsmFI GGGAC 1 cut(s) 778
BsnI GGCC 1 cut(s) 121
BsoBI CYCGRG 2 cut(s) 253, 276
Bsp119I TTCGAA 2 cut(s) 241, 384
Bsp1286I GDGCHC 4 cut(s) 295, 713, 820, 870
Bsp143I GATC 1 cut(s) 803
BspACI CCGC 9 cut(s) 65, 89, 132, 135, 147, 150, 153, 581, 686
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 452, 872
BspLI GGNNCC 1 cut(s) 867
BspPI GGATC 1 cut(s) 811
BspT104I TTCGAA 2 cut(s) 241, 384
BspT107I GGYRCC 1 cut(s) 865
BsrBI CCGCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 696
BssMI GATC 1 cut(s) 803
BssSI CACGAG 1 cut(s) 932
Bst2BI CACGAG 1 cut(s) 932
Bst4CI ACNGT 2 cut(s) 560, 614
BstBI TTCGAA 2 cut(s) 241, 384
BstC8I GCNNGC 2 cut(s) 91, 694
BstDEI CTNAG 3 cut(s) 417, 460, 859
BstENI CCTNNNNNAGG 1 cut(s) 325
BstF5I GGATG 4 cut(s) 173, 446, 608, 728
BstKTI GATC 1 cut(s) 806
BstMAI GTCTC 1 cut(s) 621
BstMBI GATC 1 cut(s) 803
BstMWI GCNNNNNNNGC 7 cut(s) 132, 138, 147, 218, 413, 686, 698
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 295, 868
BstSLI GKGCMC 1 cut(s) 870
BstV1I GCAGC 2 cut(s) 701, 725
BstV2I GAAGAC 2 cut(s) 648, 870
Bsu36I CCTNAGG 1 cut(s) 859
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 4 cut(s) 173, 446, 608, 728
Cac8I GCNNGC 2 cut(s) 91, 694
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 887, 985
CviAII CATG 2 cut(s) 123, 735
CviQI GTAC 2 cut(s) 887, 985
DdeI CTNAG 3 cut(s) 417, 460, 859
DpnI GATC 1 cut(s) 805
DpnII GATC 1 cut(s) 803
DraIII CACNNNGTG 1 cut(s) 116
EciI GGCGGA 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 818
Eco24I GRGCYC 2 cut(s) 713, 820
Eco53kI GAGCTC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 748
Eco81I CCTNAGG 1 cut(s) 859
Eco88I CYCGRG 2 cut(s) 253, 276
EcoICRI GAGCTC 1 cut(s) 818
EcoNI CCTNNNNNAGG 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 713, 820
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 2 cut(s) 126, 738
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 1 cut(s) 778
FatI CATG 2 cut(s) 122, 734
FauI CCCGC 2 cut(s) 58, 82
Fnu4HI GCNGC 6 cut(s) 133, 148, 151, 687, 690, 739
FokI GGATG 4 cut(s) 180, 453, 615, 735
FriOI GRGCYC 2 cut(s) 713, 820
Fsp4HI GCNGC 6 cut(s) 133, 148, 151, 687, 690, 739
FspBI CTAG 1 cut(s) 322
GluI GCNGC 6 cut(s) 133, 148, 151, 687, 690, 739
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 121
HapII CCGG 5 cut(s) 98, 249, 297, 771, 870
Hin1II CATG 2 cut(s) 126, 738
HindIII AAGCTT 2 cut(s) 70, 210
HinfI GANTC 1 cut(s) 641
HpaII CCGG 5 cut(s) 98, 249, 297, 771, 870
HphI GGTGA 3 cut(s) 770, 803, 863
Hpy188I TCNGA 4 cut(s) 45, 377, 517, 640
Hpy188III TCNNGA 3 cut(s) 276, 664, 821
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 257, 392, 670, 755, 867, 964
HpyCH4III ACNGT 2 cut(s) 560, 614
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 2 cut(s) 650, 896
HpyF10VI GCNNNNNNNGC 7 cut(s) 132, 138, 147, 218, 413, 686, 698
HpyF3I CTNAG 3 cut(s) 417, 460, 859
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 2 cut(s) 126, 738
Kzo9I GATC 1 cut(s) 803
LmnI GCTCC 2 cut(s) 86, 155
Lsp1109I GCAGC 2 cut(s) 701, 725
LweI GCATC 2 cut(s) 497, 713
MaeI CTAG 1 cut(s) 322
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 2 cut(s) 105, 608
MalI GATC 1 cut(s) 805
MbiI CCGCTC 1 cut(s) 89
MboI GATC 1 cut(s) 803
MboII GAAGA 4 cut(s) 185, 482, 648, 870
MhlI GDGCHC 4 cut(s) 295, 713, 820, 870
MluCI AATT 4 cut(s) 244, 285, 959, 977
MmeI TCCRAC 2 cut(s) 23, 370
MroXI GAANNNNTTC 1 cut(s) 877
MseI TTAA 1 cut(s) 844
MslI CAYNNNNRTG 1 cut(s) 811
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 5 cut(s) 98, 249, 297, 771, 870
MspR9I CCNGG 2 cut(s) 297, 870
MwoI GCNNNNNNNGC 7 cut(s) 132, 138, 147, 218, 413, 686, 698
NciI CCSGG 2 cut(s) 297, 870
NdeII GATC 1 cut(s) 803
NlaIII CATG 2 cut(s) 126, 738
NlaIV GGNNCC 1 cut(s) 867
NspV TTCGAA 2 cut(s) 241, 384
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 507
PdmI GAANNNNTTC 1 cut(s) 877
PfeI GAWTC 1 cut(s) 641
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 6 cut(s) 134, 149, 152, 688, 691, 740
PshAI GACNNNNGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 820
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 867
PspPI GGNCC 1 cut(s) 119
PsrI GAACNNNNNNTAC 2 cut(s) 524, 556
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 2 cut(s) 888, 986
RsaNI GTAC 2 cut(s) 887, 985
RseI CAYNNNNRTG 1 cut(s) 811
SacI GAGCTC 1 cut(s) 820
SaqAI TTAA 1 cut(s) 844
SatI GCNGC 6 cut(s) 133, 148, 151, 687, 690, 739
Sau3AI GATC 1 cut(s) 803
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 297, 870
SduI GDGCHC 4 cut(s) 295, 713, 820, 870
SfaNI GCATC 2 cut(s) 497, 713
SfuI TTCGAA 2 cut(s) 241, 384
SmiMI CAYNNNNRTG 1 cut(s) 811
SmlI CTYRAG 2 cut(s) 222, 819
SmoI CTYRAG 2 cut(s) 222, 819
Sse9I AATT 4 cut(s) 244, 285, 959, 977
SsiI CCGC 9 cut(s) 65, 89, 132, 135, 147, 150, 153, 581, 686
SspMI CTAG 1 cut(s) 322
SstI GAGCTC 1 cut(s) 820
StyD4I CCNGG 2 cut(s) 295, 868
TaaI ACNGT 2 cut(s) 560, 614
TaiI ACGT 1 cut(s) 633
TaqI TCGA 4 cut(s) 54, 241, 289, 384
TasI AATT 4 cut(s) 244, 285, 959, 977
TauI GCSGC 4 cut(s) 135, 150, 153, 689
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 1 cut(s) 844
Tru9I TTAA 1 cut(s) 844
TseI GCWGC 2 cut(s) 689, 738
TspDTI ATGAA 1 cut(s) 741
Van91I CCANNNNNTGG 1 cut(s) 116
XagI CCTNNNNNAGG 1 cut(s) 325
XapI RAATTY 3 cut(s) 244, 285, 977
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.