Rmu_sc0039338.1_g000001

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039338.1
OG0019975
Physical Location & Seq
Forward (+)
1 .. 1149
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039338.1_g000001.1.cds

Sequence Viewer

Length: 674 bp
gccacgtgattcccctcgtcgagctggccaaacgactggtcgtccaccagaacttcaccgtcaccttcttcatccctaaccacggttcgaatctgactccgcaaaagaaagtcctggaagatttgcccgcaaccatatgctccacattcctccctcccctgaacttggacgacctccctcacgatgccttcatggaaaccaaaatcgctctcaccttgactcgctcactcccggttctgcgtgactcggttaaggtgctcaccgagtccactcggctagtggctattgttgttgatatctttggcacagaggcctttgatgtggctaaggaatgcaatgtgcttccctacattttcttcctttctacggcgatggggatttgcctgaaccggtccggcttccgggttgtgtgcgactctatgggagagattttggagacgtacgtttttcaagataggaccagtgagggatatgaatcattgctccgcattggcaagaggtacaagtcggctgctgggatcatggtgaatagctttgcggatttggaagtgggtgctctcaaggctttcgaggaacaagggccaggtcttggtcttccaccggtttaccctatcggacctgtgattaagaccggttcaacggacgagtttagtggaaatgactgcttgagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

223

Amino Acids

24.46

Weight (kDa)

5.11

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019975)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0195321 RchiOBHm_Chr7g0195331
rosa_multiflora Rmu_sc0002381.1_g000006 Rmu_sc0039338.1_g000001 Rmu_sc0039339.1_g000001
rosa_rugosa Rorug07G0217100
rosa_samantha Rh7CG154900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 589
AciI CCGC 4 cut(s) 100, 128, 486, 538
AclWI GGATC 1 cut(s) 526
AcoI YGGCCR 1 cut(s) 26
AcvI CACGTG 1 cut(s) 6
AfaI GTAC 2 cut(s) 442, 502
AfiI CCNNNNNNNGG 5 cut(s) 82, 165, 366, 401, 589
AgeI ACCGGT 3 cut(s) 389, 600, 631
AgsI TTSAA 2 cut(s) 451, 638
AhdI GACNNNNNGTC 1 cut(s) 40
AjnI CCWGG 2 cut(s) 113, 582
AluBI AGCT 3 cut(s) 24, 533, 671
AluI AGCT 3 cut(s) 24, 533, 671
Alw21I GWGCWC 2 cut(s) 260, 558
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 1 cut(s) 526
AoxI GGCC 3 cut(s) 26, 311, 580
ApeKI GCWGC 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AsiGI ACCGGT 3 cut(s) 389, 600, 631
AspS9I GGNCC 4 cut(s) 392, 458, 580, 616
AsuC2I CCSGG 2 cut(s) 232, 403
AsuHPI GGTGA 5 cut(s) 48, 54, 204, 252, 537
AsuII TTCGAA 1 cut(s) 88
AvaII GGWCC 3 cut(s) 392, 458, 616
BalI TGGCCA 1 cut(s) 28
BbrPI CACGTG 1 cut(s) 6
BbsI GAAGAC 1 cut(s) 586
Bbv12I GWGCWC 2 cut(s) 260, 558
BbvI GCAGC 1 cut(s) 498
BccI CCATC 1 cut(s) 366
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 115, 584
BcnI CCSGG 2 cut(s) 232, 403
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 512
BlsI GCNGC 1 cut(s) 513
Bme1390I CCNGG 4 cut(s) 115, 232, 403, 584
Bme18I GGWCC 3 cut(s) 392, 458, 616
BmeRI GACNNNNNGTC 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 392, 458, 580, 616
BmrFI CCNGG 4 cut(s) 115, 232, 403, 584
BmsI GCATC 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 586
Bpu10I CCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 544
BpuMI CCSGG 2 cut(s) 232, 403
BsaAI YACGTR 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 3 cut(s) 389, 600, 631
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 165, 366, 401, 589
Bse118I RCCGGY 3 cut(s) 389, 600, 631
Bse1I ACTGG 2 cut(s) 41, 461
Bse3DI GCAATG 2 cut(s) 342, 478
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 2 cut(s) 115, 584
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 71
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 5 cut(s) 82, 165, 366, 401, 589
BseMI GCAATG 2 cut(s) 342, 478
BseNI ACTGG 2 cut(s) 41, 461
BseXI GCAGC 1 cut(s) 498
BseYI CCCAGC 1 cut(s) 514
BshFI GGCC 3 cut(s) 28, 313, 582
BshTI ACCGGT 3 cut(s) 389, 600, 631
BsiHKAI GWGCWC 2 cut(s) 260, 558
BsiSI CCGG 6 cut(s) 232, 390, 395, 402, 601, 632
BsiWI CGTACG 1 cut(s) 440
BslI CCNNNNNNNGG 5 cut(s) 82, 165, 366, 401, 589
BsmAI GTCTC 1 cut(s) 430
BsmBI CGTCTC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 3 cut(s) 28, 313, 582
Bsp119I TTCGAA 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 260, 558
Bsp143I GATC 1 cut(s) 518
BspACI CCGC 4 cut(s) 100, 128, 486, 538
BspANI GGCC 3 cut(s) 28, 313, 582
BspPI GGATC 1 cut(s) 526
BspT104I TTCGAA 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 342, 478
BsrFI RCCGGY 3 cut(s) 389, 600, 631
BsrI ACTGG 2 cut(s) 41, 461
BssAI RCCGGY 3 cut(s) 389, 600, 631
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 518
Bst2UI CCWGG 2 cut(s) 115, 584
Bst4CI ACNGT 2 cut(s) 60, 85
BstBAI YACGTR 1 cut(s) 6
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 26, 128
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 1 cut(s) 521
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 1 cut(s) 518
BstMWI GCNNNNNNNGC 1 cut(s) 562
BstNI CCWGG 2 cut(s) 115, 584
BstSCI CCNGG 4 cut(s) 113, 230, 401, 582
BstV1I GCAGC 1 cut(s) 498
BstV2I GAAGAC 1 cut(s) 586
BstXI CCANNNNNNTGG 1 cut(s) 36
BsuRI GGCC 3 cut(s) 28, 313, 582
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 385
BtsCI GGATG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 2 cut(s) 26, 128
Cfr10I RCCGGY 3 cut(s) 389, 600, 631
Cfr13I GGNCC 4 cut(s) 392, 458, 580, 616
CpoI CGGWCCG 1 cut(s) 392
Csp6I GTAC 2 cut(s) 441, 501
CspAI ACCGGT 3 cut(s) 389, 600, 631
CspI CGGWCCG 1 cut(s) 392
CviAII CATG 2 cut(s) 192, 522
CviQI GTAC 2 cut(s) 441, 501
DdeI CTNAG 1 cut(s) 326
DpnI GATC 1 cut(s) 520
DpnII GATC 1 cut(s) 518
DriI GACNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 313
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 3 cut(s) 392, 458, 616
Eco72I CACGTG 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 113, 582
EcoRV GATATC 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 430
FaeI CATG 2 cut(s) 195, 525
FaiI YATR 6 cut(s) 136, 138, 193, 421, 473, 523
FatI CATG 2 cut(s) 191, 521
FauI CCCGC 1 cut(s) 135
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 512
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 1 cut(s) 277
GluI GCNGC 1 cut(s) 512
GsaI CCCAGC 1 cut(s) 518
HaeIII GGCC 3 cut(s) 28, 313, 582
HapII CCGG 6 cut(s) 232, 390, 395, 402, 601, 632
Hin1II CATG 2 cut(s) 195, 525
HinfI GANTC 8 cut(s) 9, 90, 96, 219, 244, 265, 415, 475
HpaII CCGG 6 cut(s) 232, 390, 395, 402, 601, 632
HphI GGTGA 5 cut(s) 48, 54, 204, 252, 537
Hpy166II GTNNAC 3 cut(s) 45, 269, 606
Hpy188I TCNGA 2 cut(s) 95, 616
Hpy188III TCNNGA 2 cut(s) 181, 451
Hpy8I GTNNAC 3 cut(s) 45, 269, 606
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 75, 198
HpyCH4III ACNGT 2 cut(s) 60, 85
HpyCH4IV ACGT 3 cut(s) 5, 439, 443
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 562
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 3 cut(s) 5, 439, 443
Hsp92II CATG 2 cut(s) 195, 525
Kzo9I GATC 1 cut(s) 518
LmnI GCTCC 2 cut(s) 145, 488
Lsp1109I GCAGC 1 cut(s) 498
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 277
MaeII ACGT 3 cut(s) 5, 439, 443
MaeIII GTNAC 2 cut(s) 60, 241
MalI GATC 1 cut(s) 520
MboI GATC 1 cut(s) 518
MboII GAAGA 4 cut(s) 60, 130, 348, 586
MhlI GDGCHC 2 cut(s) 260, 558
MlsI TGGCCA 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 28
MlyI GAGTC 5 cut(s) 90, 213, 238, 274, 409
MnlI CCTC 9 cut(s) 25, 160, 164, 184, 188, 303, 459, 491, 564
Mox20I TGGCCA 1 cut(s) 28
MscI TGGCCA 1 cut(s) 28
MseI TTAA 2 cut(s) 251, 626
Msp20I TGGCCA 1 cut(s) 28
MspI CCGG 6 cut(s) 232, 390, 395, 402, 601, 632
MspR9I CCNGG 4 cut(s) 115, 232, 403, 584
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 115, 584
MwoI GCNNNNNNNGC 1 cut(s) 562
NciI CCSGG 2 cut(s) 232, 403
NdeI CATATG 1 cut(s) 136
NdeII GATC 1 cut(s) 518
NlaIII CATG 2 cut(s) 195, 525
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 2 cut(s) 60, 241
NspV TTCGAA 1 cut(s) 88
PceI AGGCCT 1 cut(s) 313
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 3 cut(s) 9, 90, 475
Pfl23II CGTACG 1 cut(s) 440
PflMI CCANNNNNTGG 1 cut(s) 589
PfoI TCCNGGA 1 cut(s) 113
PinAI ACCGGT 3 cut(s) 389, 600, 631
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 5 cut(s) 90, 213, 238, 273, 409
PmaCI CACGTG 1 cut(s) 6
PmlI CACGTG 1 cut(s) 6
PpsI GAGTC 5 cut(s) 90, 213, 238, 273, 409
Ppu21I YACGTR 1 cut(s) 6
Psp6I CCWGG 2 cut(s) 113, 582
PspCI CACGTG 1 cut(s) 6
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 2 cut(s) 113, 582
PspLI CGTACG 1 cut(s) 440
PspPI GGNCC 4 cut(s) 392, 458, 580, 616
RsaI GTAC 2 cut(s) 442, 502
RsaNI GTAC 2 cut(s) 441, 501
Rsr2I CGGWCCG 1 cut(s) 392
RsrII CGGWCCG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 251, 626
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 1 cut(s) 518
Sau96I GGNCC 4 cut(s) 392, 458, 580, 616
SchI GAGTC 5 cut(s) 90, 213, 238, 274, 409
ScrFI CCNGG 4 cut(s) 115, 232, 403, 584
SduI GDGCHC 2 cut(s) 260, 558
SfaNI GCATC 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 3 cut(s) 392, 458, 616
SmlI CTYRAG 2 cut(s) 559, 666
SmoI CTYRAG 2 cut(s) 559, 666
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 4 cut(s) 100, 128, 486, 538
SspMI CTAG 1 cut(s) 277
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 4 cut(s) 113, 230, 401, 582
TaaI ACNGT 2 cut(s) 60, 85
TaiI ACGT 3 cut(s) 8, 442, 446
TaqI TCGA 3 cut(s) 20, 88, 569
TfiI GAWTC 3 cut(s) 9, 90, 475
Tru1I TTAA 2 cut(s) 251, 626
Tru9I TTAA 2 cut(s) 251, 626
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 2 cut(s) 60, 241
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 2 cut(s) 60, 241
TspDTI ATGAA 3 cut(s) 60, 180, 488
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 1 cut(s) 468
Van91I CCANNNNNTGG 1 cut(s) 589
VpaK11BI GGWCC 3 cut(s) 392, 458, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 276
XspI CTAG 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.