Rmu_ssc0000023.1_g000003

Glycosyl transferase family 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000023.1
OG0011102
Physical Location & Seq
Reverse (-)
6191 .. 7940
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
atggagttggggtacgtgaccgtgcacgatataagagatcaggagaggtttgatgggtactatcacaaccagttcatggtggtgaatgattgtttgcataggtataaattcatggcaaagtggatgttcttttttgatgtggatgagtatatctatatgcctcccaagagcaccctcaaaactgttctggattctctggctgagtattcacagttcaccattgaacagatgccaatgagcaacaagctctgccgcattgaagattatcacaaaactcacagaaaatgggggtttgagaaacttgtgttcaaggatgtgaagacaggcataagaagagaccgaaaatacgctgtgcgaccgcgcaatgtgtatggcaccggggtgcacatgtcgcagaacctagctgggaagacgacgcacaaaaccgagaacaggatcaaatatttccattaccacggtaccattgcagacaggcgtgagccttgtaagaagctgatcaatgacacacagatctaccttgacaaagtcccttatgttatggacacaaccatgagagatgttgctggggctgtgaagagatttgagcaaagaatgattggatccaggttacaacagactaggcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009987 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

208

Amino Acids

25.05

Weight (kDa)

9.5

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_92 PF01697 2 - 164 4.5e-24 Glycosyltransferase family 92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20170 AT5G44670
fragaria_vesca FvH4_3g13330 FvH4_3g13330
malus_domestica MD05G1242800.v1.1 MD10G1224800.v1.1
prunus_persica Prupe.4G120600_v2.0.a1
pyrus_communis pycom05g21940 pycom10g18850
rosa_chinensis RchiOBHm_Chr5g0021801
rosa_laevigata RLG00000032629
rosa_multiflora Rmu_co8317171.1_g000001 Rmu_ssc0000023.1_g000003
rosa_roxburghii Rroxscaffold_1G00056920
rosa_rugosa Rorug05G0069600
rosa_samantha Rh5AG158100 Rh5BG157700 Rh5CG171800 Rh5DG157900
rosa_wichuraiana Rw5G014080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 2 cut(s) 374, 458
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 361
AciI CCGC 2 cut(s) 253, 359
AclWI GGATC 3 cut(s) 443, 594, 607
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 3 cut(s) 14, 59, 460
AfiI CCNNNNNNNGG 2 cut(s) 76, 432
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 3 cut(s) 224, 260, 310
AjnI CCWGG 1 cut(s) 602
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 3 cut(s) 247, 404, 493
AluI AGCT 3 cut(s) 247, 404, 493
Alw21I GWGCWC 3 cut(s) 27, 173, 387
Alw26I GTCTC 1 cut(s) 330
Alw44I GTGCAC 2 cut(s) 23, 383
AlwI GGATC 3 cut(s) 443, 594, 607
ApaLI GTGCAC 2 cut(s) 23, 383
ApoI RAATTY 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 2 cut(s) 94, 208
BaeGI GKGCMC 2 cut(s) 27, 387
BaeI ACNNNNGTAYC 2 cut(s) 442, 475
BamHI GGATCC 1 cut(s) 599
BanI GGYRCC 2 cut(s) 374, 458
BbsI GAAGAC 2 cut(s) 326, 416
Bbv12I GWGCWC 3 cut(s) 27, 173, 387
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 604
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 2 cut(s) 401, 618
BglII AGATCT 1 cut(s) 510
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 379, 604
BmiI GGNNCC 3 cut(s) 376, 460, 601
BmrFI CCNGG 2 cut(s) 379, 604
BmsI GCATC 1 cut(s) 219
BpiI GAAGAC 2 cut(s) 326, 416
BpuMI CCSGG 1 cut(s) 379
BsaAI YACGTR 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 378, 454
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 432
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 2 cut(s) 370, 462
BseBI CCWGG 1 cut(s) 604
BseDI CCNNGG 2 cut(s) 378, 454
BseGI GGATG 3 cut(s) 129, 148, 319
BseLI CCNNNNNNNGG 2 cut(s) 76, 432
BseMI GCAATG 2 cut(s) 370, 462
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 70
BseSI GKGCMC 2 cut(s) 27, 387
BseYI CCCAGC 2 cut(s) 404, 563
Bsh1236I CGCG 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 359
BshNI GGYRCC 2 cut(s) 374, 458
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 3 cut(s) 27, 173, 387
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 2 cut(s) 76, 432
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 512
Bso31I GGTCTC 1 cut(s) 330
Bsp1286I GDGCHC 3 cut(s) 27, 173, 387
Bsp143I GATC 5 cut(s) 37, 435, 495, 510, 599
BspACI CCGC 2 cut(s) 253, 359
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 376, 460, 601
BspPI GGATC 3 cut(s) 443, 594, 607
BspT107I GGYRCC 2 cut(s) 374, 458
BspTNI GGTCTC 1 cut(s) 330
BsrDI GCAATG 2 cut(s) 370, 462
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 378, 454
BssMI GATC 5 cut(s) 37, 435, 495, 510, 599
Bst2UI CCWGG 1 cut(s) 604
Bst4CI ACNGT 4 cut(s) 22, 184, 213, 458
Bst6I CTCTTC 2 cut(s) 328, 569
BstBAI YACGTR 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 454
BstF5I GGATG 3 cut(s) 129, 148, 319
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 5 cut(s) 40, 438, 498, 513, 602
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 5 cut(s) 37, 435, 495, 510, 599
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 604
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 377, 602
BstSLI GKGCMC 2 cut(s) 27, 387
BstUI CGCG 1 cut(s) 361
BstV2I GAAGAC 2 cut(s) 326, 416
BstX2I RGATCY 2 cut(s) 510, 599
BstYI RGATCY 2 cut(s) 510, 599
BtgI CCRYGG 1 cut(s) 454
BtsCI GGATG 3 cut(s) 129, 148, 319
CfoI GCGC 1 cut(s) 363
CseI GACGC 1 cut(s) 424
Csp6I GTAC 3 cut(s) 13, 58, 459
CviAII CATG 4 cut(s) 76, 112, 388, 550
CviJI RGCY 6 cut(s) 200, 247, 404, 481, 493, 569
CviKI_1 RGCY 6 cut(s) 200, 247, 404, 481, 493, 569
CviQI GTAC 3 cut(s) 13, 58, 459
DdeI CTNAG 1 cut(s) 201
DpnI GATC 5 cut(s) 39, 437, 497, 512, 601
DpnII GATC 5 cut(s) 37, 435, 495, 510, 599
Eam1104I CTCTTC 2 cut(s) 328, 569
EarI CTCTTC 2 cut(s) 328, 569
Eco31I GGTCTC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 602
FaeI CATG 4 cut(s) 79, 115, 391, 553
FaqI GGGAC 1 cut(s) 512
FatI CATG 4 cut(s) 75, 111, 387, 549
FbaI TGATCA 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 3 cut(s) 136, 155, 326
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 2 cut(s) 401, 618
GlaI GCGC 1 cut(s) 362
GluI GCNGC 1 cut(s) 253
GsaI CCCAGC 2 cut(s) 408, 567
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 424
HhaI GCGC 1 cut(s) 363
Hin1II CATG 4 cut(s) 79, 115, 391, 553
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 94, 208
Hpy166II GTNNAC 3 cut(s) 25, 216, 385
Hpy188III TCNNGA 2 cut(s) 41, 188
Hpy8I GTNNAC 3 cut(s) 25, 216, 385
Hpy99I CGWCG 1 cut(s) 418
HpyCH4III ACNGT 4 cut(s) 22, 184, 213, 458
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 25, 97, 385, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 4 cut(s) 79, 115, 391, 553
HspAI GCGC 1 cut(s) 361
KpnI GGTACC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 5 cut(s) 37, 435, 495, 510, 599
LweI GCATC 1 cut(s) 219
MaeI CTAG 2 cut(s) 401, 618
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 16, 606
MalI GATC 5 cut(s) 39, 437, 497, 512, 601
MboI GATC 5 cut(s) 37, 435, 495, 510, 599
MboII GAAGA 5 cut(s) 272, 331, 345, 421, 586
MflI RGATCY 2 cut(s) 510, 599
MhlI GDGCHC 3 cut(s) 27, 173, 387
MluCI AATT 1 cut(s) 107
MnlI CCTC 3 cut(s) 39, 171, 185
MslI CAYNNNNRTG 3 cut(s) 80, 380, 548
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 2 cut(s) 379, 604
MvaI CCWGG 1 cut(s) 604
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 391
NciI CCSGG 1 cut(s) 379
NdeII GATC 5 cut(s) 37, 435, 495, 510, 599
NlaIII CATG 4 cut(s) 79, 115, 391, 553
NlaIV GGNNCC 3 cut(s) 376, 460, 601
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 380
PciI ACATGT 1 cut(s) 387
PfeI GAWTC 1 cut(s) 191
PflFI GACNNNGTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 16
PscI ACATGT 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 602
PspFI CCCAGC 2 cut(s) 404, 563
PspGI CCWGG 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 376, 460, 601
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PsuI RGATCY 2 cut(s) 510, 599
PsyI GACNNNGTC 1 cut(s) 524
RsaI GTAC 3 cut(s) 14, 59, 460
RsaNI GTAC 3 cut(s) 13, 58, 459
RseI CAYNNNNRTG 3 cut(s) 80, 380, 548
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 5 cut(s) 37, 435, 495, 510, 599
ScrFI CCNGG 2 cut(s) 379, 604
SduI GDGCHC 3 cut(s) 27, 173, 387
SetI ASST 9 cut(s) 18, 50, 104, 249, 402, 406, 495, 519, 608
SfaNI GCATC 1 cut(s) 219
SmiMI CAYNNNNRTG 3 cut(s) 80, 380, 548
Sse9I AATT 1 cut(s) 107
SsiI CCGC 2 cut(s) 253, 359
SspI AATATT 1 cut(s) 443
SspMI CTAG 2 cut(s) 401, 618
StyD4I CCNGG 2 cut(s) 377, 602
TaaI ACNGT 4 cut(s) 22, 184, 213, 458
TaiI ACGT 1 cut(s) 18
TaqII GACCGA 1 cut(s) 354
TasI AATT 1 cut(s) 107
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 1 cut(s) 191
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 64, 100
Tth111I GACNNNGTC 1 cut(s) 524
Van91I CCANNNNNTGG 1 cut(s) 76
VneI GTGCAC 2 cut(s) 23, 383
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 391
XspI CTAG 2 cut(s) 401, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.