Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0022898

Physical Location & Seq

Genomic Coordinates Forward (+)

118562 .. 118918

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgggaaatccatgcaaggactgggggttcttccaagtgatcaaccatggagttccggtggataagctccgaaagattggggctgctactaggaagttctttgctcagcctttggaggagaagaggaagagttggagggatgaaacaaacgtgataggttgcaatgagagagagaatacccagaatgtcaatgagtactggaaggaggtgtttaatttaatagtggaagagcctaccttagaggagaaggaagagcatgaatggactgccaatggcccaagtatcccccggaaatcagttaactcaatcatcactaagggtagtagactagtagatgaatatatacattccgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

118

Amino Acids

13.73

Weight (kDa)

5.94

Isoelectric Point (pI)

16.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022898)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014528
rosa_multiflora	Rmu_sc0012608.1_g000001 Rmu_ssc0000050.1_g000029
rosa_samantha	Rh6AG104800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	325
AfaI	GTAC	1 cut(s)	197
AhlI	ACTAGT	1 cut(s)	328
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	289
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	3 cut(s)	90, 329, 355
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	84
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	46, 287
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse1I	ACTGG	2 cut(s)	26, 203
Bse3DI	GCAATG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	46, 287
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	2 cut(s)	26, 203
BseRI	GAGGAG	2 cut(s)	131, 257
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	56, 289
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	39
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	46
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	118
BspQI	GCTCTTC	2 cut(s)	222, 246
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	26, 203
BssECI	CCNNGG	2 cut(s)	46, 287
BssMI	GATC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	46
Bst6I	CTCTTC	4 cut(s)	116, 122, 222, 246
BstDEI	CTNAG	3 cut(s)	105, 238, 315
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	3 cut(s)	12, 47, 257
CviJI	RGCY	5 cut(s)	67, 83, 109, 232, 276
CviKI_1	RGCY	5 cut(s)	67, 83, 109, 232, 276
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	3 cut(s)	105, 238, 315
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eam1104I	CTCTTC	4 cut(s)	116, 122, 222, 246
EarI	CTCTTC	4 cut(s)	116, 122, 222, 246
Eco130I	CCWWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	3 cut(s)	15, 50, 260
FaiI	YATR	5 cut(s)	13, 48, 258, 342, 344
FatI	CATG	3 cut(s)	11, 46, 256
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	3 cut(s)	90, 329, 355
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	2 cut(s)	56, 289
Hin1II	CATG	3 cut(s)	15, 50, 260
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	2 cut(s)	56, 289
Hpy166II	GTNNAC	2 cut(s)	301, 326
Hpy188I	TCNGA	1 cut(s)	71
Hpy8I	GTNNAC	2 cut(s)	301, 326
HpyAV	CCTTC	2 cut(s)	196, 241
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	15, 162
HpyF3I	CTNAG	3 cut(s)	105, 238, 315
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	15, 50, 260
Ksp22I	TGATCA	1 cut(s)	39
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	39
LguI	GCTCTTC	2 cut(s)	222, 246
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	5 cut(s)	7, 69, 184, 194, 302
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	3 cut(s)	90, 329, 355
MaeII	ACGT	1 cut(s)	150
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	5 cut(s)	22, 133, 139, 239, 263
MluCI	AATT	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	109, 117, 129, 199, 235
MseI	TTAA	3 cut(s)	213, 218, 300
MspI	CCGG	2 cut(s)	56, 289
MspR9I	CCNGG	1 cut(s)	289
NciI	CCSGG	1 cut(s)	289
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	3 cut(s)	15, 50, 260
PciSI	GCTCTTC	2 cut(s)	222, 246
PkrI	GCNGC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SapI	GCTCTTC	2 cut(s)	222, 246
SaqAI	TTAA	3 cut(s)	213, 218, 300
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	275
ScaI	AGTACT	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	5 cut(s)	69, 153, 160, 210, 239
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	1 cut(s)	214
SspMI	CTAG	3 cut(s)	90, 329, 355
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	46
TaiI	ACGT	1 cut(s)	153
TasI	AATT	1 cut(s)	214
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	3 cut(s)	213, 218, 300
Tru9I	TTAA	3 cut(s)	213, 218, 300
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	156, 273, 351
TspGWI	ACGGA	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	325
XspI	CTAG	3 cut(s)	90, 329, 355
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.