Rh6AG104800

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0022898
Physical Location & Seq
Reverse (-)
15506437 .. 15509349
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG104800.1

Sequence Viewer

Length: 468 bp
ATGGGAAATCCATGCAAGGACTGGGGGTTCTTCCAAGCGATCAACCATGGAGTTCCGGTGGATAAGCTCCGAAAGATTGGGGCTGCTACTAGGAAGTTCTTTGCTCAGCCTTTGGAGGAGAAGAGGAAGAGTTGGAGGGATGAAACAAACGTGATAGGTTGCAATGAGAGAGAGAATACCCAGAATGTCAATGAGTACTGGAAGGAGGTGTTTAATTTAATAGTGGAAGAGCCTACCTTAGAGGAGAAGGAAGAGCATGAATGGACTGCCAATGGCCCAAGTATCCCCCGGAAATCAGTTAACTCAATCATCACTAAGGGTAGTAGACTAAGTTTCTTGTTCTCTGTTTGTCGTCAAATTGCCATAAAGCTGGCTTGTCCATTTTGGATGAAGAAATATTTGAGGGGGTGGTATGTGTTGGACACAAGTGTTTTCGCAAAGCGTTGGAGCTTTTGCAAAACGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

155

Amino Acids

18.18

Weight (kDa)

9.26

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 3 - 84 5.1e-18 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022898)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014528
rosa_multiflora Rmu_sc0012608.1_g000001 Rmu_ssc0000050.1_g000029
rosa_samantha Rh6AG104800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 325
AclI AACGTT 1 cut(s) 461
AfaI GTAC 1 cut(s) 197
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
AluBI AGCT 3 cut(s) 67, 370, 450
AluI AGCT 3 cut(s) 67, 370, 450
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 289
BbvI GCAGC 1 cut(s) 70
BciVI GTATCC 1 cut(s) 293
BcnI CCSGG 1 cut(s) 289
BfaI CTAG 1 cut(s) 90
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 1 cut(s) 84
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
Bpu1102I GCTNAGC 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 46, 287
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bse1I ACTGG 2 cut(s) 26, 203
Bse3DI GCAATG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 46, 287
BseGI GGATG 2 cut(s) 145, 393
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 26, 203
BseRI GAGGAG 2 cut(s) 131, 257
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 56, 289
BsnI GGCC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 39
Bsp1720I GCTNAGC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 46
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 1 cut(s) 118
BspQI GCTCTTC 2 cut(s) 222, 246
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 26, 203
BssECI CCNNGG 2 cut(s) 46, 287
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 46
Bst6I CTCTTC 4 cut(s) 116, 122, 222, 246
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 4 cut(s) 105, 238, 315, 329
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 145, 393
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 370
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 145, 393
Cac8I GCNNGC 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 12, 47, 257
CviJI RGCY 8 cut(s) 67, 83, 109, 232, 276, 370, 374, 450
CviKI_1 RGCY 8 cut(s) 67, 83, 109, 232, 276, 370, 374, 450
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 4 cut(s) 105, 238, 315, 329
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 4 cut(s) 116, 122, 222, 246
EarI CTCTTC 4 cut(s) 116, 122, 222, 246
Eco130I CCWWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 15, 50, 260
FaiI YATR 5 cut(s) 13, 48, 258, 365, 414
FatI CATG 3 cut(s) 11, 46, 256
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 152, 400
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 276
HapII CCGG 2 cut(s) 56, 289
Hin1II CATG 3 cut(s) 15, 50, 260
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 2 cut(s) 56, 289
Hpy166II GTNNAC 2 cut(s) 301, 326
Hpy188I TCNGA 1 cut(s) 71
Hpy8I GTNNAC 2 cut(s) 301, 326
HpyAV CCTTC 2 cut(s) 196, 241
HpyCH4IV ACGT 2 cut(s) 150, 461
HpyCH4V TGCA 3 cut(s) 15, 162, 456
HpyF3I CTNAG 4 cut(s) 105, 238, 315, 329
HpySE526I ACGT 2 cut(s) 150, 461
Hsp92II CATG 3 cut(s) 15, 50, 260
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 2 cut(s) 222, 246
LmnI GCTCC 2 cut(s) 72, 447
LpnPI CCDG 6 cut(s) 7, 69, 184, 194, 302, 356
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 90
MaeII ACGT 2 cut(s) 150, 461
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 6 cut(s) 22, 133, 139, 239, 263, 403
MluCI AATT 2 cut(s) 214, 357
MmeI TCCRAC 3 cut(s) 113, 399, 425
MnlI CCTC 6 cut(s) 109, 117, 129, 199, 235, 396
MseI TTAA 3 cut(s) 213, 218, 300
MspI CCGG 2 cut(s) 56, 289
MspR9I CCNGG 1 cut(s) 289
NciI CCSGG 1 cut(s) 289
NcoI CCATGG 1 cut(s) 46
NdeII GATC 1 cut(s) 39
NlaIII CATG 3 cut(s) 15, 50, 260
PciSI GCTCTTC 2 cut(s) 222, 246
PkrI GCNGC 1 cut(s) 85
Psp1406I AACGTT 1 cut(s) 461
PspPI GGNCC 1 cut(s) 275
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SapI GCTCTTC 2 cut(s) 222, 246
SaqAI TTAA 3 cut(s) 213, 218, 300
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 289
SetI ASST 8 cut(s) 69, 153, 160, 210, 239, 372, 452, 464
Sse9I AATT 2 cut(s) 214, 357
SspI AATATT 1 cut(s) 398
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 2 cut(s) 153, 464
TasI AATT 2 cut(s) 214, 357
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 3 cut(s) 213, 218, 300
Tru9I TTAA 3 cut(s) 213, 218, 300
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 156, 273, 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 325
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.