Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0021616

Physical Location & Seq

Genomic Coordinates Forward (+)

121298 .. 126738

Gene Structure 5441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggaagctctggtggtgaacatccaggagctgtcgaccaatgccgaagacctctcgaaccttcacatcattctgaagcaagctcatgtctcgctacaagccgagtcgattcggttgcttccccttttggaccagattgatccctccgtgcattcgcttcgatacctctacatcctgcgtgagtgctatggtaatagaagttgtgttttgattgcgagtcacgaaccgagattggaaagtgcggcgacaacaccggaggtctgcacggagagtcgcgaactgagattgcaaggtgcggcggcaacgtggggtcttcttcatggagaagtgaaagatgtgaaagagaaatgtcagtgcccgccccggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

122

Amino Acids

13.66

Weight (kDa)

5.69

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021616)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000050.1_g000031
rosa_samantha	Rh6BG098200 Rh6CG059000 Rh6DG055800 Rh6DG055900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	35
AccII	CGCG	1 cut(s)	276
AciI	CCGC	4 cut(s)	242, 296, 299, 359
AclWI	GGATC	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	3 cut(s)	8, 31, 83
AluI	AGCT	3 cut(s)	8, 31, 83
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	54, 305
BcgI	CGANNNNNNTGC	4 cut(s)	97, 131, 140, 174
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	94
BisI	GCNGC	3 cut(s)	243, 297, 300
BlsI	GCNGC	3 cut(s)	244, 298, 301
Bme1390I	CCNGG	2 cut(s)	26, 364
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmrFI	CCNGG	2 cut(s)	26, 364
BpiI	GAAGAC	2 cut(s)	54, 305
BpuMI	CCSGG	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	21, 171
BseMII	CTCAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	359
BsgI	GTGCAG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	254, 364
BsmAI	GTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	139
Bsp68I	TCGCGA	1 cut(s)	276
BspACI	CCGC	4 cut(s)	242, 296, 299, 359
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	276
BspPI	GGATC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	81, 359
BstDEI	CTNAG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	21, 171
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	24, 362
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	1 cut(s)	276
BstV2I	GAAGAC	2 cut(s)	54, 305
BtsCI	GGATG	2 cut(s)	21, 171
BtsIMutI	CAGTG	1 cut(s)	359
BtuMI	TCGCGA	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	81, 359
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	130
CviAII	CATG	2 cut(s)	86, 320
CviJI	RGCY	4 cut(s)	8, 31, 83, 101
CviKI_1	RGCY	4 cut(s)	8, 31, 83, 101
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	89, 323
FaiI	YATR	3 cut(s)	87, 189, 321
FatI	CATG	2 cut(s)	85, 319
FauI	CCCGC	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	243, 297, 300
FokI	GGATG	2 cut(s)	8, 158
Fsp4HI	GCNGC	3 cut(s)	243, 297, 300
GluI	GCNGC	3 cut(s)	243, 297, 300
HapII	CCGG	2 cut(s)	254, 364
Hin1II	CATG	2 cut(s)	89, 323
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	4 cut(s)	104, 109, 217, 271
HpaII	CCGG	2 cut(s)	254, 364
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	19, 36
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	3 cut(s)	55, 221, 275
Hpy8I	GTNNAC	2 cut(s)	19, 36
HpyAV	CCTTC	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	3 cut(s)	151, 264, 289
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	89, 323
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	5 cut(s)	11, 38, 146, 188, 267
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	59, 305, 308
MhlI	GDGCHC	1 cut(s)	359
MlyI	GAGTC	3 cut(s)	113, 226, 280
MnlI	CCTC	4 cut(s)	62, 154, 176, 250
MspI	CCGG	2 cut(s)	254, 364
MspR9I	CCNGG	2 cut(s)	26, 364
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	276
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	89, 323
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	218
NruI	TCGCGA	1 cut(s)	276
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	244, 298, 301
PleI	GAGTC	3 cut(s)	112, 225, 279
PpsI	GAGTC	3 cut(s)	112, 225, 279
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	276
SalI	GTCGAC	1 cut(s)	34
SatI	GCNGC	3 cut(s)	243, 297, 300
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	3 cut(s)	113, 226, 280
ScrFI	CCNGG	2 cut(s)	26, 364
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	9 cut(s)	10, 33, 54, 63, 85, 168, 261, 295, 308
SinI	GGWCC	1 cut(s)	130
SsiI	CCGC	4 cut(s)	242, 296, 299, 359
StyD4I	CCNGG	2 cut(s)	24, 362
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	4 cut(s)	35, 56, 107, 160
TauI	GCSGC	3 cut(s)	245, 299, 302
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	2 cut(s)	136, 281
TspRI	CASTG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.