Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0021616

Physical Location & Seq

Genomic Coordinates Forward (+)

5856852 .. 5862382

Gene Structure 5531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAAGAAATCTGTAATAGTCGATTCTTGCTTGAACACTTGCTTTTGTTAAAGATCGAGTTGCTAGCAAAGTTCAAGGGTTTGAAACATGCTCACTTATGCCAAACTGAGAAGAAAATCTTGATCAAGTCCAAGTCGACGAATACGAGAGACATCTCAAACCTTCACATCATTCTGAAGCAAGCGCATGAATCGCTTCAGGCTGAGTCGATTCAGTTGCGCCCTCTTTTGGACCTGCTTGATCCCTCTCTGCATTGGCTTGGATACCTCTACATCCTGGGAATGATATGTATAGGACAGAAGTGTTATCGGAAAGCATTGGATTTTTTTCACATTGTTTTAACATCTCCGTTGTCCACCTTCAATGCAATAGCTACTGAAGCATTGAAAAAGTATATTTTGGTTTCTCTCATTCAGAATGGGCAGCCCTACATAGAATTGGCTAGACGCTATAGCACTGGTAATGTTGCTGATCTTGAGAGAATTGCTGAGTCATACATGGAATATTTTCGAAATGACAACAATTTAGGACTCGTAAAGCAGGCTATATCTTTCATGTATAAGTGCAACATTAAGGAAGCAGAAATACAGGTGCTACAATTGATTCAAGATGGTGAGTTATTTGCAACAATTAACCAGAATGATGGAATGGTTAGCTTTCATGAGGATCCACAGATGATCGAAGATATTGAATCTTCAATACAAAAGGTTGGGAGAGTGCCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

242

Amino Acids

27.79

Weight (kDa)

7.08

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COP9_hel_rpt	PF22788	86 - 142	3.3e-14	COP9 signalosome complex subunit 3, N-terminal helical repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0021616)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000050.1_g000031
rosa_samantha	Rh6BG098200 Rh6CG059000 Rh6DG055800 Rh6DG055900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	137
AclWI	GGATC	3 cut(s)	236, 662, 675
AcuI	CTGAAG	3 cut(s)	182, 197, 399
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	8 cut(s)	35, 76, 85, 364, 388, 608, 692, 699
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	2 cut(s)	374, 657
AluI	AGCT	2 cut(s)	374, 657
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	3 cut(s)	236, 662, 675
ApeKI	GCWGC	1 cut(s)	424
Asp700I	GAANNNNTTC	2 cut(s)	195, 507
AspLEI	GCGC	2 cut(s)	187, 222
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	626
AsuII	TTCGAA	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	667
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	2 cut(s)	605, 638
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	65, 444
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	425
BlsI	GCNGC	1 cut(s)	426
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	669
BmrFI	CCNGG	1 cut(s)	278
BmtI	GCTAGC	1 cut(s)	68
BplI	GAGNNNNNCTC	1 cut(s)	706
Bpu14I	TTCGAA	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	99, 195, 480
BseNI	ACTGG	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	511
Bsp143I	GATC	6 cut(s)	54, 123, 241, 472, 667, 678
BspCNI	CTCAG	3 cut(s)	100, 196, 481
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	669
BspMI	ACCTGC	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	68
BspPI	GGATC	3 cut(s)	236, 662, 675
BspT104I	TTCGAA	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	6 cut(s)	54, 123, 241, 472, 667, 678
Bst2UI	CCWGG	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	3 cut(s)	66, 183, 543
BstDEI	CTNAG	3 cut(s)	108, 204, 489
BstF5I	GGATG	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	187, 222
BstKTI	GATC	6 cut(s)	57, 126, 244, 475, 670, 681
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	6 cut(s)	54, 123, 241, 472, 667, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 380
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	667
BsuI	GTATCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	66, 183, 543
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	2 cut(s)	187, 222
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	456
CviAII	CATG	5 cut(s)	89, 188, 499, 556, 662
CviJI	RGCY	7 cut(s)	203, 259, 374, 427, 443, 545, 657
CviKI_1	RGCY	7 cut(s)	203, 259, 374, 427, 443, 545, 657
DdeI	CTNAG	3 cut(s)	108, 204, 489
DpnI	GATC	6 cut(s)	56, 125, 243, 474, 669, 680
DpnII	GATC	6 cut(s)	54, 123, 241, 472, 667, 678
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	3 cut(s)	182, 197, 399
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	5 cut(s)	92, 191, 502, 559, 665
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	5 cut(s)	88, 187, 498, 555, 661
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	425
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	425
FspBI	CTAG	2 cut(s)	65, 444
GlaI	GCGC	2 cut(s)	186, 221
GluI	GCNGC	1 cut(s)	425
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	2 cut(s)	187, 222
Hin1II	CATG	5 cut(s)	92, 191, 502, 559, 665
Hin6I	GCGC	2 cut(s)	185, 220
HinP1I	GCGC	2 cut(s)	185, 220
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	8 cut(s)	24, 191, 206, 211, 491, 531, 604, 692
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	2 cut(s)	138, 357
Hpy188I	TCNGA	3 cut(s)	177, 312, 417
Hpy188III	TCNNGA	4 cut(s)	121, 476, 608, 662
Hpy8I	GTNNAC	2 cut(s)	138, 357
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	173, 370
HpyCH4V	TGCA	4 cut(s)	253, 368, 567, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 380
HpyF3I	CTNAG	3 cut(s)	108, 204, 489
Hsp92II	CATG	5 cut(s)	92, 191, 502, 559, 665
HspAI	GCGC	2 cut(s)	185, 220
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	6 cut(s)	54, 123, 241, 472, 667, 678
LpnPI	CCDG	8 cut(s)	185, 248, 263, 290, 444, 527, 575, 650
Lsp1109I	GCAGC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	65, 444
MalI	GATC	6 cut(s)	56, 125, 243, 474, 669, 680
MboI	GATC	6 cut(s)	54, 123, 241, 472, 667, 678
MboII	GAAGA	3 cut(s)	124, 687, 695
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	1 cut(s)	667
MluCI	AATT	5 cut(s)	437, 483, 523, 599, 630
MlyI	GAGTC	3 cut(s)	215, 500, 525
MnlI	CCTC	4 cut(s)	234, 256, 278, 658
MroXI	GAANNNNTTC	2 cut(s)	195, 507
MseI	TTAA	4 cut(s)	50, 341, 573, 633
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	193, 380
NdeII	GATC	6 cut(s)	54, 123, 241, 472, 667, 678
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	5 cut(s)	92, 191, 502, 559, 665
NlaIV	GGNNCC	1 cut(s)	669
NspI	RCATGY	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	511
PagI	TCATGA	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PdmI	GAANNNNTTC	2 cut(s)	195, 507
PfeI	GAWTC	5 cut(s)	24, 191, 211, 604, 692
PkrI	GCNGC	1 cut(s)	426
PleI	GAGTC	3 cut(s)	214, 499, 525
PpsI	GAGTC	3 cut(s)	214, 499, 525
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	667
SalI	GTCGAC	1 cut(s)	136
SaqAI	TTAA	4 cut(s)	50, 341, 573, 633
SatI	GCNGC	1 cut(s)	425
Sau3AI	GATC	6 cut(s)	54, 123, 241, 472, 667, 678
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	3 cut(s)	215, 500, 525
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	8 cut(s)	165, 237, 270, 362, 376, 594, 659, 711
SfcI	CTRYAG	1 cut(s)	451
SfuI	TTCGAA	1 cut(s)	511
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	437, 483, 523, 599, 630
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	2 cut(s)	65, 444
StyD4I	CCNGG	1 cut(s)	276
TaqI	TCGA	6 cut(s)	22, 57, 137, 209, 511, 681
TasI	AATT	5 cut(s)	437, 483, 523, 599, 630
TfiI	GAWTC	5 cut(s)	24, 191, 211, 604, 692
Tru1I	TTAA	4 cut(s)	50, 341, 573, 633
Tru9I	TTAA	4 cut(s)	50, 341, 573, 633
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	1 cut(s)	424
TspDTI	ATGAA	4 cut(s)	17, 204, 544, 650
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	137
XmnI	GAANNNNTTC	2 cut(s)	195, 507
XspI	CTAG	2 cut(s)	65, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.