Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0021616

Physical Location & Seq

Genomic Coordinates Reverse (-)

15344197 .. 15347192

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCCATGGAAGCTCTGGTGGTGAACATCCAGGGGCTGTCGACCAATGCCGAAGACCTCTCGAAGATTCACATCATTCTGAAGCAAGCTCATGTCTCGCTACAAGCCGAGTCGATTCGGTTGCTTCCCCTTTTGGACCAGATTGATCCCTCCGTGCATTCGCTTCGATACCTCTACATCCTTGAAGCATGCGCTTCTGCTGCGCTTTTAAAGGGGCAAGCTAGTTCGGTGGTGTTGCCCGCTGCCAAATTTATTGGCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

87

Amino Acids

9.32

Weight (kDa)

6.24

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021616)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000050.1_g000031
rosa_samantha	Rh6BG098200 Rh6CG059000 Rh6DG055800 Rh6DG055900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	41
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	3 cut(s)	14, 89, 221
AluI	AGCT	3 cut(s)	14, 89, 221
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	200, 242
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	194, 205
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	187, 229
BcgI	CGANNNNNNTGC	4 cut(s)	103, 137, 146, 180
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	201, 243
BlsI	GCNGC	2 cut(s)	202, 244
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	6, 31
Bse8I	GATNNNNATC	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	6, 31
BseGI	GGATG	2 cut(s)	27, 177
BseJI	GATNNNNATC	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	187, 229
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	6, 31
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	32
BstC8I	GCNNGC	4 cut(s)	87, 190, 219, 240
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	27, 177
BstHHI	GCGC	2 cut(s)	194, 205
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 200
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	187, 229
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	27, 177
Cac8I	GCNNGC	4 cut(s)	87, 190, 219, 240
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	2 cut(s)	194, 205
Cfr13I	GGNCC	1 cut(s)	136
CviAII	CATG	3 cut(s)	7, 92, 189
CviJI	RGCY	6 cut(s)	5, 14, 37, 89, 107, 221
CviKI_1	RGCY	6 cut(s)	5, 14, 37, 89, 107, 221
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	10, 95, 192
FaiI	YATR	3 cut(s)	8, 93, 190
FatI	CATG	3 cut(s)	6, 91, 188
FauI	CCCGC	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	201, 243
FokI	GGATG	2 cut(s)	14, 164
Fsp4HI	GCNGC	2 cut(s)	201, 243
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	2 cut(s)	193, 204
GluI	GCNGC	2 cut(s)	201, 243
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	2 cut(s)	194, 205
Hin1II	CATG	3 cut(s)	10, 95, 192
Hin6I	GCGC	2 cut(s)	192, 203
HinP1I	GCGC	2 cut(s)	192, 203
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	67, 110, 115
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	25, 42
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	2 cut(s)	25, 42
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 200
Hsp92II	CATG	3 cut(s)	10, 95, 192
HspAI	GCGC	2 cut(s)	192, 203
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	4 cut(s)	2, 17, 44, 152
Lsp1109I	GCAGC	2 cut(s)	187, 229
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	65, 76
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	68, 160, 182
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	11, 200
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	3 cut(s)	10, 95, 192
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	133
NspI	RCATGY	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	192
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	67, 115
PkrI	GCNGC	2 cut(s)	202, 244
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	2 cut(s)	201, 243
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	6 cut(s)	16, 60, 91, 174, 223, 263
SinI	GGWCC	1 cut(s)	136
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	4 cut(s)	41, 62, 113, 166
TasI	AATT	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	67, 115
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	2 cut(s)	200, 242
TspGWI	ACGGA	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.