Rh6DG055800

COP9 signalosome complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0021616
Physical Location & Seq
Forward (+)
5776500 .. 5779113
2614 bp
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UTR
Exon/CDS
Intron
Rh6DG055800.1

Sequence Viewer

Length: 420 bp
ATGAAAGAAATCTGTAATAGTCGATTCTTGCTTGAACACTTGCTTTTGTTAAAGATCGAGTTGCTAGCAAAGTTCAAGGGTTTGAAACATGCTCACTTATGCCAAACTGAGAAGAAAATCTTGATCAAGTCCAAGTCGACGAATACGAGAGACATCTCAAACCTTCACATCATTCTGAAGCAAGCGCATGAATCGCTTCAGGCTGAGTCGATTCAGTTGCGCCCTCTTTTGGACCTGCTTGATCCCTCTCTGCATTGGCTTGGATACCTCTACATCCTGGGAATGATATGTATAGGACAGAAGTGTTATCGGAAAGCATTGGATTTTTTTCACATTGTTTTAACATCTCCGTTGTCCACCTTCAATGCAATAGCTACTGAAGCATTGAAAAAGTATATTTTGGTATGTCTTATCTTTTAA

Protein Analysis

139

Amino Acids

16.01

Weight (kDa)

9.26

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COP9_hel_rpt PF22788 86 - 138 4.4e-12 COP9 signalosome complex subunit 3, N-terminal helical repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021616)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000050.1_g000031
rosa_samantha Rh6BG098200 Rh6CG059000 Rh6DG055800 Rh6DG055900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 137
AclWI GGATC 1 cut(s) 236
AcuI CTGAAG 3 cut(s) 182, 197, 399
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 5 cut(s) 35, 76, 85, 364, 388
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 187, 222
AspS9I GGNCC 1 cut(s) 232
AsuNHI GCTAGC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 1 cut(s) 257
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 243
BfuI GTATCC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 278
BmtI GCTAGC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 2 cut(s) 99, 195
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 144
Bsp143I GATC 3 cut(s) 54, 123, 241
BspCNI CTCAG 2 cut(s) 100, 196
BspMI ACCTGC 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 3 cut(s) 54, 123, 241
Bst2UI CCWGG 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 66, 183
BstDEI CTNAG 2 cut(s) 108, 204
BstF5I GGATG 1 cut(s) 273
BstHHI GCGC 2 cut(s) 187, 222
BstKTI GATC 3 cut(s) 57, 126, 244
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 54, 123, 241
BstMWI GCNNNNNNNGC 2 cut(s) 193, 380
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 276
BsuI GTATCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 66, 183
CfoI GCGC 2 cut(s) 187, 222
Cfr13I GGNCC 1 cut(s) 232
CviAII CATG 2 cut(s) 89, 188
CviJI RGCY 3 cut(s) 203, 259, 374
CviKI_1 RGCY 3 cut(s) 203, 259, 374
DdeI CTNAG 2 cut(s) 108, 204
DpnI GATC 3 cut(s) 56, 125, 243
DpnII GATC 3 cut(s) 54, 123, 241
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 3 cut(s) 182, 197, 399
EcoRII CCWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 92, 191
FaiI YATR 7 cut(s) 90, 100, 189, 289, 293, 396, 406
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 2 cut(s) 88, 187
FbaI TGATCA 1 cut(s) 123
FblI GTMKAC 1 cut(s) 137
FokI GGATG 1 cut(s) 260
FspBI CTAG 1 cut(s) 65
GlaI GCGC 2 cut(s) 186, 221
HhaI GCGC 2 cut(s) 187, 222
Hin1II CATG 2 cut(s) 92, 191
Hin6I GCGC 2 cut(s) 185, 220
HinP1I GCGC 2 cut(s) 185, 220
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 4 cut(s) 24, 191, 206, 211
Hpy166II GTNNAC 2 cut(s) 138, 357
Hpy188I TCNGA 2 cut(s) 177, 312
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 138, 357
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 173, 370
HpyCH4V TGCA 2 cut(s) 253, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 380
HpyF3I CTNAG 2 cut(s) 108, 204
Hsp92II CATG 2 cut(s) 92, 191
HspAI GCGC 2 cut(s) 185, 220
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 3 cut(s) 54, 123, 241
LpnPI CCDG 4 cut(s) 185, 248, 263, 290
MaeI CTAG 1 cut(s) 65
MalI GATC 3 cut(s) 56, 125, 243
MboI GATC 3 cut(s) 54, 123, 241
MboII GAAGA 1 cut(s) 124
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 3 cut(s) 234, 256, 278
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 3 cut(s) 50, 341, 418
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 193, 380
NdeII GATC 3 cut(s) 54, 123, 241
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 2 cut(s) 92, 191
NspI RCATGY 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 3 cut(s) 24, 191, 211
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspPI GGNCC 1 cut(s) 232
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 3 cut(s) 50, 341, 418
Sau3AI GATC 3 cut(s) 54, 123, 241
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 278
SetI ASST 5 cut(s) 165, 237, 270, 362, 376
SinI GGWCC 1 cut(s) 232
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 276
TaqI TCGA 4 cut(s) 22, 57, 137, 209
TfiI GAWTC 3 cut(s) 24, 191, 211
Tru1I TTAA 3 cut(s) 50, 341, 418
Tru9I TTAA 3 cut(s) 50, 341, 418
TspDTI ATGAA 2 cut(s) 17, 204
TspGWI ACGGA 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 232
XceI RCATGY 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.