Rmu_ssc0000183.1_g000047

Peptidase, trypsin-like serine and cysteine proteases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000183.1
OG0021004
Physical Location & Seq
Forward (+)
239570 .. 240273
704 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
atggcagacacaaatctactcgaagatgttatcttcaacatcctatccaggctccccataaaatccctaatccgattcaccttcgctttgaaacgctggcgtctcgtcatattgtccaacccaaaattcgccgaaacccaaattagggtttctcaccagcagaaagacgacagtcacagactcctcgtctccaccaccatggtgggccctcctcgaatccctagacttgtacgccccatcgttcggagacaaatcctcggttttccgatgaccagccagcaagcccattacggggatggctacttgtcggccgccgatgattacaaagtcgtggtggggttacctgaaaaggggaaaaggattgaatcccccggcaacaacgatggctacggcagcatttgtgtttatgctatggggaattcggcaactgttttgaacgagactcttcattggctggacgaaaaggatgcgatagtggcttttgatttggagaaggaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

8.71

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021004)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09021
rosa_laevigata RLG00000016567
rosa_multiflora Rmu_sc0010847.1_g000002 Rmu_ssc0000183.1_g000047
rosa_roxburghii Rroxscaffold_2G00146340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 2 cut(s) 125, 418
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 6 cut(s) 144, 145, 243, 291, 292, 350
AgsI TTSAA 4 cut(s) 37, 91, 365, 436
AhdI GACNNNNNGTC 1 cut(s) 185
AjnI CCWGG 1 cut(s) 47
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AleI CACNNNNGTG 1 cut(s) 200
Alw26I GTCTC 4 cut(s) 107, 193, 241, 434
AoxI GGCC 2 cut(s) 205, 309
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 393
ApoI RAATTY 2 cut(s) 125, 418
AspS9I GGNCC 2 cut(s) 205, 206
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 70, 146
BaeGI GKGCMC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 405
BccI CCATC 3 cut(s) 245, 290, 377
BceAI ACGGC 1 cut(s) 406
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 49
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 4 cut(s) 107, 193, 241, 434
BfaI CTAG 1 cut(s) 222
BisI GCNGC 2 cut(s) 312, 394
BlsI GCNGC 2 cut(s) 313, 395
Bme1390I CCNGG 2 cut(s) 49, 372
BmeRI GACNNNNNGTC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 205, 206
BmiI GGNNCC 2 cut(s) 53, 207
BmrFI CCNGG 2 cut(s) 49, 372
BmsI GCATC 1 cut(s) 457
BoxI GACNNNNGTC 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 3 cut(s) 198, 256, 370
Bsc4I CCNNNNNNNGG 6 cut(s) 144, 145, 243, 291, 292, 350
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 3 cut(s) 198, 256, 370
BseGI GGATG 3 cut(s) 39, 301, 472
BseLI CCNNNNNNNGG 6 cut(s) 144, 145, 243, 291, 292, 350
BseRI GAGGAG 2 cut(s) 173, 201
BseSI GKGCMC 1 cut(s) 209
BseX3I CGGCCG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 207, 311
BsiEI CGRYCG 1 cut(s) 312
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 6 cut(s) 144, 145, 243, 291, 292, 350
BsmAI GTCTC 4 cut(s) 107, 193, 241, 434
BsmBI CGTCTC 2 cut(s) 107, 193
BsnI GGCC 2 cut(s) 207, 311
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 1 cut(s) 312
BspANI GGCC 2 cut(s) 207, 311
BspLI GGNNCC 2 cut(s) 53, 207
BssECI CCNNGG 3 cut(s) 198, 256, 370
BssNI GRCGYC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 173, 430
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 100
BstC8I GCNNGC 3 cut(s) 98, 278, 282
BstDSI CCRYGG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 339
BstF5I GGATG 3 cut(s) 39, 301, 472
BstMAI GTCTC 4 cut(s) 107, 193, 241, 434
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 393, 476
BstNI CCWGG 1 cut(s) 49
BstPAI GACNNNNGTC 1 cut(s) 171
BstPI GGTNACC 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 47, 370
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 405
BstXI CCANNNNNNTGG 2 cut(s) 199, 202
BstZI CGGCCG 1 cut(s) 309
BsuRI GGCC 2 cut(s) 207, 311
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 39, 301, 472
Cac8I GCNNGC 3 cut(s) 98, 278, 282
Cfr13I GGNCC 2 cut(s) 205, 206
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 199
CviJI RGCY 9 cut(s) 52, 207, 276, 284, 300, 311, 387, 454, 479
CviKI_1 RGCY 9 cut(s) 52, 207, 276, 284, 300, 311, 387, 454, 479
CviQI GTAC 1 cut(s) 230
DriI GACNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 309
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 450
Eam1105I GACNNNNNGTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 450
EclXI CGGCCG 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 209
Eco52I CGGCCG 1 cut(s) 309
Eco91I GGTNACC 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 2 cut(s) 107, 193
FaeI CATG 1 cut(s) 202
FaiI YATR 5 cut(s) 59, 110, 200, 408, 413
FatI CATG 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 312, 394
FokI GGATG 3 cut(s) 26, 308, 479
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 312, 394
FspBI CTAG 1 cut(s) 222
GluI GCNGC 2 cut(s) 312, 394
HaeIII GGCC 2 cut(s) 207, 311
HapII CCGG 1 cut(s) 372
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 1 cut(s) 202
HinfI GANTC 5 cut(s) 75, 180, 216, 365, 442
HpaII CCGG 1 cut(s) 372
HphI GGTGA 2 cut(s) 70, 146
Hpy188I TCNGA 3 cut(s) 74, 246, 267
HpyAV CCTTC 2 cut(s) 91, 487
HpyCH4III ACNGT 2 cut(s) 173, 430
HpyF10VI GCNNNNNNNGC 2 cut(s) 393, 476
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 1 cut(s) 202
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 9 cut(s) 34, 61, 82, 170, 286, 290, 357, 385, 440
Lsp1109I GCAGC 1 cut(s) 405
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 173, 339
MboII GAAGA 3 cut(s) 25, 35, 437
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 3 cut(s) 125, 141, 418
MlyI GAGTC 2 cut(s) 174, 436
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 194, 219, 222, 266
MslI CAYNNNNRTG 2 cut(s) 197, 200
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 2 cut(s) 49, 372
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 393, 476
NciI CCSGG 1 cut(s) 372
NcoI CCATGG 1 cut(s) 198
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 2 cut(s) 53, 207
NmuCI GTSAC 1 cut(s) 173
OliI CACNNNNGTG 1 cut(s) 200
PfeI GAWTC 3 cut(s) 75, 216, 365
PkrI GCNGC 2 cut(s) 313, 395
PleI GAGTC 2 cut(s) 174, 436
PpsI GAGTC 2 cut(s) 174, 436
PshAI GACNNNNGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 47
PspEI GGTNACC 1 cut(s) 339
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 53, 207
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 205, 206
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 2 cut(s) 197, 200
SatI GCNGC 2 cut(s) 312, 394
Sau96I GGNCC 2 cut(s) 205, 206
SchI GAGTC 2 cut(s) 174, 436
ScrFI CCNGG 2 cut(s) 49, 372
SduI GDGCHC 1 cut(s) 209
SetI ASST 2 cut(s) 83, 346
SfaNI GCATC 1 cut(s) 457
SmiMI CAYNNNNRTG 2 cut(s) 197, 200
Sse9I AATT 3 cut(s) 125, 141, 418
SsiI CCGC 1 cut(s) 312
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 47, 370
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 173, 430
TaqI TCGA 2 cut(s) 21, 214
TasI AATT 3 cut(s) 125, 141, 418
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 3 cut(s) 75, 216, 365
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 393
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 437
XapI RAATTY 2 cut(s) 125, 418
XcmI CCANNNNNNNNNTGG 2 cut(s) 199, 293
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.