Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000409.1

Orthogroup ID

OG0021620

Physical Location & Seq

Genomic Coordinates Reverse (-)

73670 .. 74610

Gene Structure 941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgatttcatcaaacattggcgaagttgcctccatttttctgacagcggccctgggaattccagaaggcatgattccagttcagcttctgtgggtcaacctggttactgatggacccccagcaacagctctaggattcaatcctccggacaaagatataatggagaagccccctagaagaagcaacgactcattgatcagtgtgtggatcttatttcgttatctggtgattggagtctatgtcggtgttgcaacagtaggggtgttcattatctggtacacccattcctcatttttgggcattgacctgagtggagatggccatagtcttgtgacctaccatcaacttgcaaactggcacaagtgcacttcttgggaggggttttcagcatctagctttacagctggaactcaggtgttcacttttgacacagatccatgtgagtatttccattcgggcaagattaaagcctcaactctctccctctcagtcttggttgccattgagatgttcaactccctcaatgccctgtctgaggacggtagccttctgacgatgccaccctgggttaatccatggctccttcttgccatgtccgtctccttcgggttgcactttttgattctctacgtgccattccttgctcaagtgttcggcattgtccccctcagcctgaatgaatggctcttggtgttggcagttgcttttccagttgtcttaattgatgaggtgctgaagtttgtaggaagatgtacaactaagttgccagattccgctgtagagaaatccaagcgcaaaacagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

268

Amino Acids

29.41

Weight (kDa)

5.3

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	23 - 248	5.7e-51	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021620)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co7962200.1_g000001 Rmu_co8346273.1_g000001 Rmu_sc0031207.1_g000001 Rmu_sc0031208.1_g000001 Rmu_ssc0000409.1_g000023

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	2 cut(s)	47, 774
AclWI	GGATC	2 cut(s)	215, 428
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	755
AfaI	GTAC	2 cut(s)	278, 754
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	139, 514
AjnI	CCWGG	3 cut(s)	51, 99, 563
AluBI	AGCT	4 cut(s)	85, 128, 396, 404
AluI	AGCT	4 cut(s)	85, 128, 396, 404
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	604
Alw44I	GTGCAC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	215, 428
AlwNI	CAGNNNCTG	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	2 cut(s)	48, 319
ApaLI	GTGCAC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	795
AspS9I	GGNCC	2 cut(s)	49, 113
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	368
BbvCI	CCTCAGC	1 cut(s)	668
BccI	CCATC	3 cut(s)	104, 311, 348
BciT130I	CCWGG	3 cut(s)	53, 101, 565
BclI	TGATCA	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	3 cut(s)	131, 174, 393
BfmI	CTRYAG	1 cut(s)	777
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	53, 101, 565
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	49, 113
BmiI	GGNNCC	2 cut(s)	115, 581
BmrFI	CCNGG	3 cut(s)	53, 101, 565
BmsI	GCATC	2 cut(s)	398, 546
Bpu10I	CCTNAGC	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	631
BsaJI	CCNNGG	5 cut(s)	51, 52, 563, 564, 575
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	3 cut(s)	77, 359, 710
BseAI	TCCGGA	1 cut(s)	145
BseBI	CCWGG	3 cut(s)	53, 101, 565
BseDI	CCNNGG	5 cut(s)	51, 52, 563, 564, 575
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	5 cut(s)	299, 425, 501, 525, 682
BseNI	ACTGG	3 cut(s)	77, 359, 710
BseSI	GKGCMC	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	2 cut(s)	50, 321
BsiHKAI	GWGCWC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	604
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	2 cut(s)	50, 321
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp13I	TCCGGA	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	195, 207, 433
Bsp19I	CCATGG	1 cut(s)	575
BspACI	CCGC	2 cut(s)	47, 774
BspANI	GGCC	2 cut(s)	50, 321
BspCNI	CTCAG	5 cut(s)	300, 424, 500, 526, 681
BspEI	TCCGGA	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	115, 581
BspPI	GGATC	2 cut(s)	215, 428
BsrGI	TGTACA	1 cut(s)	752
BsrI	ACTGG	3 cut(s)	77, 359, 710
BssECI	CCNNGG	5 cut(s)	51, 52, 563, 564, 575
BssMI	GATC	3 cut(s)	195, 207, 433
BssT1I	CCWWGG	1 cut(s)	575
Bst2UI	CCWGG	3 cut(s)	53, 101, 565
Bst4CI	ACNGT	2 cut(s)	256, 542
BstAUI	TGTACA	1 cut(s)	752
BstBAI	YACGTR	1 cut(s)	631
BstDEI	CTNAG	6 cut(s)	308, 411, 487, 534, 668, 759
BstDSI	CCRYGG	1 cut(s)	575
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	795
BstKTI	GATC	3 cut(s)	198, 210, 436
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	3 cut(s)	195, 207, 433
BstNI	CCWGG	3 cut(s)	53, 101, 565
BstSCI	CCNGG	3 cut(s)	51, 99, 563
BstSFI	CTRYAG	1 cut(s)	777
BstSLI	GKGCMC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	207, 433
BstYI	RGATCY	2 cut(s)	207, 433
BsuRI	GGCC	2 cut(s)	50, 321
BtgI	CCRYGG	1 cut(s)	575
BtsIMutI	CAGTG	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	795
Cfr13I	GGNCC	2 cut(s)	49, 113
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	277, 753
CviAII	CATG	4 cut(s)	70, 438, 576, 592
CviQI	GTAC	2 cut(s)	277, 753
DdeI	CTNAG	6 cut(s)	308, 411, 487, 534, 668, 759
DpnI	GATC	3 cut(s)	197, 209, 435
DpnII	GATC	3 cut(s)	195, 207, 433
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	755
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	57
EcoRII	CCWGG	3 cut(s)	51, 99, 563
EcoT14I	CCWWGG	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	575
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	4 cut(s)	73, 441, 579, 595
FaiI	YATR	7 cut(s)	71, 158, 240, 324, 439, 577, 593
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	4 cut(s)	69, 437, 575, 591
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	3 cut(s)	131, 174, 393
GlaI	GCGC	1 cut(s)	794
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	50, 321
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	795
Hin1II	CATG	4 cut(s)	73, 441, 579, 595
Hin6I	GCGC	1 cut(s)	793
HinP1I	GCGC	1 cut(s)	793
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	6 cut(s)	73, 135, 188, 234, 622, 770
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	4 cut(s)	97, 279, 366, 420
Hpy188I	TCNGA	3 cut(s)	42, 535, 552
Hpy188III	TCNNGA	2 cut(s)	62, 146
Hpy8I	GTNNAC	4 cut(s)	97, 279, 366, 420
HpyAV	CCTTC	4 cut(s)	59, 557, 593, 613
HpyCH4III	ACNGT	2 cut(s)	256, 542
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	4 cut(s)	251, 350, 366, 613
HpyF3I	CTNAG	6 cut(s)	308, 411, 487, 534, 668, 759
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	4 cut(s)	73, 441, 579, 595
HspAI	GCGC	1 cut(s)	793
Kpn2I	TCCGGA	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	195, 207, 433
LmnI	GCTCC	1 cut(s)	585
LweI	GCATC	2 cut(s)	398, 546
MabI	ACCWGGT	1 cut(s)	99
MaeI	CTAG	3 cut(s)	131, 174, 393
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	103, 331
MalI	GATC	3 cut(s)	197, 209, 435
MboI	GATC	3 cut(s)	195, 207, 433
MboII	GAAGA	2 cut(s)	189, 759
MflI	RGATCY	2 cut(s)	207, 433
MhlI	GDGCHC	1 cut(s)	368
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	2 cut(s)	57, 720
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	182, 243
Mox20I	TGGCCA	1 cut(s)	321
MroI	TCCGGA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	3 cut(s)	465, 570, 719
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	3 cut(s)	47, 404, 776
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	3 cut(s)	53, 101, 565
MvaI	CCWGG	3 cut(s)	53, 101, 565
NcoI	CCATGG	1 cut(s)	575
NdeII	GATC	3 cut(s)	195, 207, 433
NlaIII	CATG	4 cut(s)	73, 441, 579, 595
NlaIV	GGNNCC	2 cut(s)	115, 581
NmuCI	GTSAC	1 cut(s)	331
PasI	CCCWGGG	2 cut(s)	52, 564
PfeI	GAWTC	4 cut(s)	73, 135, 622, 770
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	2 cut(s)	182, 242
PpsI	GAGTC	2 cut(s)	182, 242
Ppu21I	YACGTR	1 cut(s)	631
Psp6I	CCWGG	3 cut(s)	51, 99, 563
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	3 cut(s)	51, 99, 563
PspN4I	GGNNCC	2 cut(s)	115, 581
PspPI	GGNCC	2 cut(s)	49, 113
PstNI	CAGNNNCTG	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	207, 433
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	278, 754
RsaNI	GTAC	2 cut(s)	277, 753
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	3 cut(s)	465, 570, 719
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	3 cut(s)	195, 207, 433
Sau96I	GGNCC	2 cut(s)	49, 113
SchI	GAGTC	2 cut(s)	182, 243
ScrFI	CCNGG	3 cut(s)	53, 101, 565
SduI	GDGCHC	1 cut(s)	368
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	2 cut(s)	398, 546
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
Sse9I	AATT	2 cut(s)	57, 720
SsiI	CCGC	2 cut(s)	47, 774
SspMI	CTAG	3 cut(s)	131, 174, 393
StyD4I	CCNGG	3 cut(s)	51, 99, 563
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	2 cut(s)	256, 542
TaiI	ACGT	1 cut(s)	633
TasI	AATT	2 cut(s)	57, 720
TatI	WGTACW	1 cut(s)	752
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	4 cut(s)	73, 135, 622, 770
Tru1I	TTAA	3 cut(s)	465, 570, 719
Tru9I	TTAA	3 cut(s)	465, 570, 719
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	256, 693
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	1 cut(s)	205
VneI	GTGCAC	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	1 cut(s)	57
XspI	CTAG	3 cut(s)	131, 174, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.