Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000489.1

Orthogroup ID

OG0020656

Physical Location & Seq

Genomic Coordinates Forward (+)

17826 .. 18140

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000489.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgctgcataagtacacctgcagcatcatcatcagaattagcaccaccgccgttggcaaagctaaattgcatgtacaacgcattgcatgccgaggtgttccagtcccgtactcattcggaatcgcgcctcatagatattgctactttgacgagtggtttcatattgactgtaacgagtctacagggaacaagcctttctggaggctcactcaactggaggtcctgaatatttctaacgaaggcaagcttccggtgaaaagccctgttattttcttaaagtgcaagggaaaacaaactcgccaagttgcaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

104

Amino Acids

11.91

Weight (kDa)

9.63

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020656)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020658
rosa_multiflora	Rmu_ssc0000489.1_g000005
rosa_samantha	Rh2AG498200 Rh2BG509400 Rh2CG484300 Rh2DG521100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	48
AfaI	GTAC	3 cut(s)	14, 75, 110
AluBI	AGCT	2 cut(s)	62, 247
AluI	AGCT	2 cut(s)	62, 247
ApeKI	GCWGC	2 cut(s)	4, 21
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	313
BfmI	CTRYAG	2 cut(s)	19, 180
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	5, 22
BlsI	GCNGC	2 cut(s)	6, 23
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpmI	CTGGAG	2 cut(s)	220, 236
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	101, 219
Bse3DI	GCAATG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	101, 219
BseXI	GCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
Bsp1407I	TGTACA	1 cut(s)	73
BspACI	CCGC	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	23
BspMI	ACCTGC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	81
BsrGI	TGTACA	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	101, 219
BssECI	CCNNGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstAUI	TGTACA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	88, 245
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNSI	RCATGY	2 cut(s)	74, 90
BstSFI	CTRYAG	2 cut(s)	19, 180
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	88, 245
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	13, 74, 109
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	2 cut(s)	71, 87
CviJI	RGCY	5 cut(s)	62, 193, 205, 247, 261
CviKI_1	RGCY	5 cut(s)	62, 193, 205, 247, 261
CviQI	GTAC	3 cut(s)	13, 74, 109
Eco47I	GGWCC	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	220
FaeI	CATG	2 cut(s)	74, 90
FaiI	YATR	5 cut(s)	9, 72, 88, 132, 162
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	70, 86
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	5, 22
Fsp4HI	GCNGC	2 cut(s)	5, 22
FspBI	CTAG	1 cut(s)	313
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	5, 22
GsuI	CTGGAG	2 cut(s)	220, 236
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	74, 90
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	120, 176
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	15, 180
Hpy188I	TCNGA	2 cut(s)	35, 119
Hpy188III	TCNNGA	2 cut(s)	199, 223
Hpy8I	GTNNAC	2 cut(s)	15, 180
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	6 cut(s)	7, 21, 70, 86, 282, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	74, 90
HspAI	GCGC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	31, 114, 168, 184, 200, 236, 264, 276
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	170
MluCI	AATT	2 cut(s)	36, 65
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	86, 138, 195, 211
MseI	TTAA	1 cut(s)	275
MspI	CCGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	74, 90
NmeAIII	GCCGAG	1 cut(s)	116
NspI	RCATGY	2 cut(s)	74, 90
PaeI	GCATGC	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	6, 23
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	220
PspPPI	RGGWCCY	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	14, 75, 110
RsaNI	GTAC	3 cut(s)	13, 74, 109
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	2 cut(s)	5, 22
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	185
SetI	ASST	5 cut(s)	20, 64, 97, 222, 249
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	2 cut(s)	19, 180
SinI	GGWCC	1 cut(s)	220
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	2 cut(s)	36, 65
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	170
TasI	AATT	2 cut(s)	36, 65
TatI	WGTACW	2 cut(s)	12, 73
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseI	GCWGC	2 cut(s)	4, 21
TspDTI	ATGAA	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	220
XceI	RCATGY	2 cut(s)	74, 90
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.