Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0020656

Physical Location & Seq

Genomic Coordinates Reverse (-)

71654712 .. 71656849

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG509400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCAAGTTCATGATCATACAACAGTAATCATTACGTTCGATCTTATTTATATGCTGCATAAGTACACCTGCAGCATCATCATCAGAATTAGCACCACCGCCGTTGGCAAAGCTAAATTGCATGTACAACGCATTGCATGCCGAGGTGTTCCAGTCCCGTACTCATTCGGAATCGCGCCTCATAGATATTGCTACTTTGACGAGTGGTTTCATATTGACTGTAACGAGTCTACAGGGAACAAGCCTTTCTGGAGGCTCACTCAACTGGAGGTCCTGAATATTTCTAACGAAGGCAAGCTTCCGGTGAAAAGCCCTGTTATTTTCTTAAAGTGCAAGGGAAAACAAACTCGCCAAGTTGCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

121

Amino Acids

13.94

Weight (kDa)

9.35

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	46 - 98	1.2e-07	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020656)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000020658
rosa_multiflora	Rmu_ssc0000489.1_g000005
rosa_samantha	Rh2AG498200 Rh2BG509400 Rh2CG484300 Rh2DG521100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	230
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	99
AfaI	GTAC	3 cut(s)	65, 126, 161
AluBI	AGCT	2 cut(s)	113, 298
AluI	AGCT	2 cut(s)	113, 298
ApeKI	GCWGC	2 cut(s)	55, 72
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	42, 84
BceAI	ACGGC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	13
BfaI	CTAG	1 cut(s)	364
BfmI	CTRYAG	2 cut(s)	70, 231
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	56, 73
BlsI	GCNGC	2 cut(s)	57, 74
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmsI	GCATC	1 cut(s)	84
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BpmI	CTGGAG	2 cut(s)	271, 287
BsaJI	CCNNGG	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	152, 270
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	152, 270
BseXI	GCAGC	2 cut(s)	42, 84
Bsh1236I	CGCG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	13, 40
BspACI	CCGC	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	132
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	152, 270
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	13, 40
Bst4CI	ACNGT	2 cut(s)	25, 221
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	139, 296
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	16, 43
BstMBI	GATC	2 cut(s)	13, 40
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNSI	RCATGY	2 cut(s)	125, 141
BstSFI	CTRYAG	2 cut(s)	70, 231
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	42, 84
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	139, 296
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	64, 125, 160
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	3 cut(s)	11, 122, 138
CviJI	RGCY	5 cut(s)	113, 244, 256, 298, 312
CviKI_1	RGCY	5 cut(s)	113, 244, 256, 298, 312
CviQI	GTAC	3 cut(s)	64, 125, 160
DpnI	GATC	2 cut(s)	15, 42
DpnII	GATC	2 cut(s)	13, 40
Eco47I	GGWCC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	271
FaeI	CATG	3 cut(s)	14, 125, 141
FaiI	YATR	9 cut(s)	12, 18, 51, 53, 60, 123, 139, 183, 213
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	3 cut(s)	10, 121, 137
FbaI	TGATCA	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	56, 73
Fsp4HI	GCNGC	2 cut(s)	56, 73
FspBI	CTAG	1 cut(s)	364
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	56, 73
GsuI	CTGGAG	2 cut(s)	271, 287
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	14, 125, 141
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	171, 227
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	66, 231
Hpy188I	TCNGA	2 cut(s)	86, 170
Hpy188III	TCNNGA	3 cut(s)	11, 250, 274
Hpy8I	GTNNAC	2 cut(s)	66, 231
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	25, 221
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	7 cut(s)	4, 58, 72, 121, 137, 333, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	14, 125, 141
HspAI	GCGC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	13, 40
LpnPI	CCDG	8 cut(s)	82, 165, 219, 235, 251, 287, 315, 327
Lsp1109I	GCAGC	2 cut(s)	42, 84
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	364
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	15, 42
MboI	GATC	2 cut(s)	13, 40
MluCI	AATT	2 cut(s)	87, 116
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	137, 189, 246, 262
MseI	TTAA	1 cut(s)	326
MspI	CCGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	2 cut(s)	13, 40
NlaIII	CATG	3 cut(s)	14, 125, 141
NmeAIII	GCCGAG	1 cut(s)	167
NspI	RCATGY	2 cut(s)	125, 141
PaeI	GCATGC	1 cut(s)	141
PagI	TCATGA	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	57, 74
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	271
Psp5II	RGGWCCY	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	74
RsaI	GTAC	3 cut(s)	65, 126, 161
RsaNI	GTAC	3 cut(s)	64, 125, 160
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	56, 73
Sau3AI	GATC	2 cut(s)	13, 40
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	236
SetI	ASST	6 cut(s)	38, 71, 115, 148, 273, 300
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	2 cut(s)	70, 231
SinI	GGWCC	1 cut(s)	271
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	2 cut(s)	87, 116
SsiI	CCGC	1 cut(s)	99
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	1 cut(s)	364
TaaI	ACNGT	2 cut(s)	25, 221
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	87, 116
TatI	WGTACW	2 cut(s)	63, 124
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TseI	GCWGC	2 cut(s)	55, 72
TspDTI	ATGAA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	271
XceI	RCATGY	2 cut(s)	125, 141
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.