Rroxscaffold_1G00044390

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0022812
Physical Location & Seq
Reverse (-)
63345626 .. 63350382
4757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044390.1

Sequence Viewer

Length: 489 bp
ATGGGGAAATCAAGGTCCAGAAGCTCATCCTCAACATCTCCGTCGGCGAAAGCGGCGATCGTCTCACCAAGGCCGCCAAGGTCTTGGAGCAACTCAGCGGCCAGACCCCTGTTTTCTCCAAAGGTCTTTCGGAATTATGTGTTTTTGATAGTTGGCTTACCTATTGTTAGGAATACTCAGCCTCGCTTCCAGTTCATTGTTATGAATCGGCGTAACACAGATAACCTAGTGGAGAATCTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTGTTGTATAGGAATGCAGCTCAGGAAGTTAATGGCATTTGGTTTTATAATTCACGTGAATGTGAGGAAGTTGCAAATCTCTTCACTAGGTACATGAGAGAGAGGAGGATGAATCAGTTTGGGTTTCTTTTGAATCAGAACACAAATCCCAACAAGTCCTTCAAGGTGGACGGGCTGATTGGTTTGGTTTCTGAACATGTTGAAGCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

162

Amino Acids

18.67

Weight (kDa)

10.06

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 57 - 121 2.7e-22 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022812)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0234071
rosa_laevigata RLG00000001868
rosa_roxburghii Rroxscaffold_1G00044390
rosa_samantha Rh5AG422800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AciI CCGC 3 cut(s) 53, 74, 98
AcoI YGGCCR 1 cut(s) 99
AcvI CACGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 4 cut(s) 266, 409, 439, 479
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 2 cut(s) 24, 296
AluI AGCT 2 cut(s) 24, 296
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 2 cut(s) 71, 99
ApeKI GCWGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 15
BbrPI CACGTG 1 cut(s) 332
BbvI GCAGC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 227, 363
BisI GCNGC 4 cut(s) 54, 74, 99, 294
BlsI GCNGC 4 cut(s) 55, 75, 100, 295
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 68, 77
Bse1I ACTGG 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 68, 77
BseGI GGATG 2 cut(s) 26, 390
BseMII CTCAG 3 cut(s) 108, 191, 311
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 394
BseXI GCAGC 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 73, 101
BsiEI CGRYCG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 67
BsmBI CGTCTC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 2 cut(s) 73, 101
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 3 cut(s) 53, 74, 98
BspANI GGCC 2 cut(s) 73, 101
BspCNI CTCAG 3 cut(s) 107, 190, 310
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 68, 77
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 68, 77
Bst6I CTCTTC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 332
BstDEI CTNAG 3 cut(s) 94, 177, 297
BstF5I GGATG 2 cut(s) 26, 390
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 305
BstXI CCANNNNNNTGG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 73, 101
BtsCI GGATG 2 cut(s) 26, 390
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 489
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 370, 473
CviJI RGCY 7 cut(s) 24, 73, 101, 156, 181, 296, 451
CviKI_1 RGCY 7 cut(s) 24, 73, 101, 156, 181, 296, 451
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 94, 177, 297
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco130I CCWWGG 2 cut(s) 68, 77
Eco47I GGWCC 1 cut(s) 15
Eco72I CACGTG 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 68, 77
ErhI CCWWGG 2 cut(s) 68, 77
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 2 cut(s) 373, 476
FaiI YATR 8 cut(s) 138, 203, 258, 274, 285, 324, 371, 474
FatI CATG 2 cut(s) 369, 472
Fnu4HI GCNGC 4 cut(s) 54, 74, 99, 294
FokI GGATG 2 cut(s) 13, 397
Fsp4HI GCNGC 4 cut(s) 54, 74, 99, 294
FspBI CTAG 2 cut(s) 227, 363
GluI GCNGC 4 cut(s) 54, 74, 99, 294
HaeIII GGCC 2 cut(s) 73, 101
Hin1II CATG 2 cut(s) 373, 476
HinfI GANTC 4 cut(s) 205, 235, 388, 409
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 3 cut(s) 132, 414, 469
Hpy188III TCNNGA 2 cut(s) 18, 299
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 293, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 94, 177, 297
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 2 cut(s) 373, 476
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 5 cut(s) 31, 115, 122, 203, 284
Lsp1109I GCAGC 1 cut(s) 305
MaeI CTAG 2 cut(s) 227, 363
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 349
MluCI AATT 2 cut(s) 133, 325
MnlI CCTC 5 cut(s) 40, 192, 334, 372, 375
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 200, 334
MspA1I CMGCKG 1 cut(s) 98
Mva1269I GAATGC 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 373, 476
NspI RCATGY 1 cut(s) 476
PciI ACATGT 1 cut(s) 472
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 4 cut(s) 205, 235, 388, 409
PkrI GCNGC 4 cut(s) 55, 75, 100, 295
Ple19I CGATCG 1 cut(s) 60
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 332
PscI ACATGT 1 cut(s) 472
PsiI TTATAA 1 cut(s) 324
PspCI CACGTG 1 cut(s) 332
PspPI GGNCC 1 cut(s) 15
PvuI CGATCG 1 cut(s) 60
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 2 cut(s) 200, 334
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 4 cut(s) 54, 74, 99, 294
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 15
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 200, 334
Sse9I AATT 2 cut(s) 133, 325
SsiI CCGC 3 cut(s) 53, 74, 98
SspMI CTAG 2 cut(s) 227, 363
StyI CCWWGG 2 cut(s) 68, 77
TaiI ACGT 1 cut(s) 334
TasI AATT 2 cut(s) 133, 325
TauI GCSGC 3 cut(s) 56, 76, 101
TfiI GAWTC 4 cut(s) 205, 235, 388, 409
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 489
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 4 cut(s) 184, 218, 273, 401
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 489
VpaK11BI GGWCC 1 cut(s) 15
XceI RCATGY 1 cut(s) 476
XspI CTAG 2 cut(s) 227, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.