Rh5AG422800

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0022812
Physical Location & Seq
Reverse (-)
72973061 .. 72985620
12560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG422800.1

Sequence Viewer

Length: 360 bp
ATGACAAATTGCAATCCACGTCGGAAAGAAGTCTCACATGTTGGATTCTGGAATAGCATAACTGTTGGCTTACCTATTGTTAGGAATACTCAGCCTCGCTTCCAGTTCATTGTTATAAATCGGCGTAACACAGATAACCTAGTGGAGAATCTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTGTTGTATAGGAATGCAGCTCAGGAAGTTAATGGCATTTGGTTTTATAATTCACGTGAATGTGAGGAAGTTGCAAATCTCTTCACTAGGATTCTTAACGCATACTCCAAGGTTCCTCCAAAGTCCAAAGTAGCTTCTAGCAAAAGGAGGGAGAGTGGGTGCTTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

119

Amino Acids

13.88

Weight (kDa)

9.55

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 28 - 92 4.6e-22 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022812)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0234071
rosa_laevigata RLG00000001868
rosa_roxburghii Rroxscaffold_1G00044390
rosa_samantha Rh5AG422800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 116, 237
AcvI CACGTG 1 cut(s) 245
AflII CTTAAG 1 cut(s) 352
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 179
AjiI CACGTC 1 cut(s) 20
AluBI AGCT 2 cut(s) 209, 323
AluI AGCT 2 cut(s) 209, 323
Alw26I GTCTC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 206
BbrPI CACGTG 1 cut(s) 245
BbvI GCAGC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 3 cut(s) 140, 276, 327
BfrI CTTAAG 1 cut(s) 352
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 303
Bpu10I CCTNAGC 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 5 cut(s) 278, 308, 328, 332, 358
Bse1I ACTGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 297
BseMII CTCAG 2 cut(s) 104, 224
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 208
BspCNI CTCAG 2 cut(s) 103, 223
BspLI GGNNCC 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 352
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 90, 210
BstMAI GTCTC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 218
BtrI CACGTC 1 cut(s) 20
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 69, 94, 209, 323
CviKI_1 RGCY 4 cut(s) 69, 94, 209, 323
DdeI CTNAG 2 cut(s) 90, 210
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 297
Eco72I CACGTG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 41
FaiI YATR 8 cut(s) 39, 59, 116, 171, 187, 198, 237, 292
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 3 cut(s) 140, 276, 327
GluI GCNGC 1 cut(s) 207
Hin1II CATG 1 cut(s) 41
HinfI GANTC 3 cut(s) 45, 148, 280
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 49, 212
Hpy99I CGWCG 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 2 cut(s) 19, 244
HpyCH4V TGCA 3 cut(s) 12, 206, 263
HpyF3I CTNAG 2 cut(s) 90, 210
HpySE526I ACGT 2 cut(s) 19, 244
Hsp92II CATG 1 cut(s) 41
LpnPI CCDG 3 cut(s) 34, 116, 197
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 3 cut(s) 140, 276, 327
MaeII ACGT 2 cut(s) 19, 244
MaeIII GTNAC 1 cut(s) 125
MboII GAAGA 1 cut(s) 262
MluCI AATT 2 cut(s) 7, 238
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 105, 247, 315, 330
MseI TTAA 3 cut(s) 219, 285, 353
MslI CAYNNNNRTG 1 cut(s) 247
MspCI CTTAAG 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 208
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 303
NspI RCATGY 1 cut(s) 41
PciI ACATGT 1 cut(s) 37
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 3 cut(s) 45, 148, 280
PkrI GCNGC 1 cut(s) 208
PmaCI CACGTG 1 cut(s) 245
PmlI CACGTG 1 cut(s) 245
Ppu21I YACGTR 1 cut(s) 245
PscI ACATGT 1 cut(s) 37
PsiI TTATAA 2 cut(s) 116, 237
PspCI CACGTG 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 303
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 3 cut(s) 219, 285, 353
SatI GCNGC 1 cut(s) 207
SetI ASST 8 cut(s) 22, 76, 141, 211, 247, 303, 325, 359
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 2 cut(s) 7, 238
SspMI CTAG 3 cut(s) 140, 276, 327
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 2 cut(s) 22, 247
TasI AATT 2 cut(s) 7, 238
TfiI GAWTC 3 cut(s) 45, 148, 280
Tru1I TTAA 3 cut(s) 219, 285, 353
Tru9I TTAA 3 cut(s) 219, 285, 353
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 97, 186
Vha464I CTTAAG 1 cut(s) 352
XceI RCATGY 1 cut(s) 41
XspI CTAG 3 cut(s) 140, 276, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.