Rroxscaffold_1G00049500

14 kDa proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018613
Physical Location & Seq
Reverse (-)
69721314 .. 69722400
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049500.1

Sequence Viewer

Length: 372 bp
ATGGCTTCTTCTACCAATCTCTCTGCAACCCTTCTCGTCTTCTCAGTCCTTCTCTACCCACCACCAATACTGGCACAAACACCAATAACACCGGTACCAACAACAGCACCAGCTATGGAAACTTGCCCGAGAGACTCGCTGAAGTTAGGGGTTTGTGCAGGCCTTCTGGGACTCGTGAACGTTAAAATTGGATCAGCAACCAGTCCCTGCTGTGCACTGCTTGAAGGCTTGGCTGATTTGAAGGCTGCTCTTTGTCTTTGCACCGCGCTTAAGGCCAATGTGCTTGGTATTAACTTGGACGTGCCAATTGCTTTGAATTTGGTTGTTAATGCTTGCCAGAAAACTGTCCCTCCTGGTTTTAAATGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

123

Amino Acids

12.56

Weight (kDa)

7.48

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 30 - 122 6.7e-08 Probable lipid transfer
Hydrophob_seed PF14547 41 - 122 1.5e-25 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 42 - 122 1.3e-13 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018613)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0030791
rosa_laevigata RLG00000033253
rosa_multiflora Rmu_co8328467.1_g000001
rosa_roxburghii Rroxscaffold_1G00049500
rosa_rugosa Rorug05G0120800
rosa_samantha Rh5AG213300 Rh5BG212100 Rh5CG235400 Rh5DG216900
rosa_wichuraiana Rw5G019510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 94
AccII CGCG 1 cut(s) 266
AciI CCGC 1 cut(s) 264
AclI AACGTT 1 cut(s) 180
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 96
AflII CTTAAG 1 cut(s) 269
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 3 cut(s) 224, 241, 316
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 126
Alw44I GTGCAC 1 cut(s) 213
AlwI GGATC 1 cut(s) 199
AlwNI CAGNNNCTG 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 2 cut(s) 160, 273
ApaLI GTGCAC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 316
AsiGI ACCGGT 1 cut(s) 91
Asp718I GGTACC 1 cut(s) 94
AspLEI GCGC 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BanI GGYRCC 1 cut(s) 94
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 75, 201
BseBI CCWGG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 75, 201
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 2 cut(s) 162, 275
BshNI GGYRCC 1 cut(s) 94
BshTI ACCGGT 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 3 cut(s) 183, 189, 332
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 3 cut(s) 183, 189, 332
BsnI GGCC 2 cut(s) 162, 275
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 264
BspANI GGCC 2 cut(s) 162, 275
BspCNI CTCAG 1 cut(s) 56
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 94
BspTI CTTAAG 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 2 cut(s) 75, 201
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 1 cut(s) 191
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 346
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 160, 334
BstDEI CTNAG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 162, 275
BtrI CACGTC 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 2 cut(s) 160, 334
CaiI CAGNNNCTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 91
Csp6I GTAC 1 cut(s) 95
CspAI ACCGGT 1 cut(s) 91
CviJI RGCY 7 cut(s) 5, 113, 162, 228, 233, 245, 275
CviKI_1 RGCY 7 cut(s) 5, 113, 162, 228, 233, 245, 275
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
DraI TTTAAA 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 352
FaiI YATR 1 cut(s) 116
FaqI GGGAC 3 cut(s) 183, 189, 332
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
GlaI GCGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 2 cut(s) 162, 275
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 2 cut(s) 134, 171
HpaII CCGG 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 178, 215
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 2 cut(s) 178, 215
HpyAV CCTTC 5 cut(s) 41, 59, 173, 218, 235
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 180, 300
HpyCH4V TGCA 4 cut(s) 26, 158, 215, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 2 cut(s) 180, 300
HspAI GCGC 1 cut(s) 266
KpnI GGTACC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 191
Lsp1109I GCAGC 1 cut(s) 232
MaeII ACGT 2 cut(s) 180, 300
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 1 cut(s) 31
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 3 cut(s) 186, 306, 316
MlyI GAGTC 2 cut(s) 128, 165
MnlI CCTC 1 cut(s) 360
MseI TTAA 5 cut(s) 183, 270, 291, 327, 360
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 96
PceI AGGCCT 1 cut(s) 162
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 2 cut(s) 128, 165
PpsI GAGTC 2 cut(s) 128, 165
Psp1406I AACGTT 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 207
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 5 cut(s) 183, 270, 291, 327, 360
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 191
SchI GAGTC 2 cut(s) 128, 165
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 217
SetI ASST 3 cut(s) 115, 183, 303
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 3 cut(s) 186, 306, 316
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 1 cut(s) 264
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 183, 303
TasI AATT 3 cut(s) 186, 306, 316
Tru1I TTAA 5 cut(s) 183, 270, 291, 327, 360
Tru9I TTAA 5 cut(s) 183, 270, 291, 327, 360
TscAI CASTG 1 cut(s) 222
TseI GCWGC 1 cut(s) 245
TspRI CASTG 1 cut(s) 222
Vha464I CTTAAG 1 cut(s) 269
VneI GTGCAC 1 cut(s) 213
XapI RAATTY 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.