Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013820

Physical Location & Seq

Genomic Coordinates Reverse (-)

5836357 .. 5861572

Gene Structure 25216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3471 bp

ATGTCACCTGCTCTCTCTTTATGTCTCTCCCTCTCTCCAGTCTGTAAAACCCAGGAAATTTCCAAGGACACCCACCTCAACACCAACAGAGAAACCCCATGTCACAAGTCTCACTCAAACTTGAAAGCCACTCGAAGATCTCTATTAAATTCTGCCTCTCTTGGACTCATAGTGCCTGGACCCCTCTCTGTTTCTCACCCTGCAAAAGCTGAGCCTGAGCCAGAGAGCCCGATTGCATCAACTTCAAGCAGAATGTCATACTCAAGATTCTTGCAGTACTTGGATGAAGGAGCTGTGAGGAAGGTAGACCTGTTTGATCAGAACGGAACTGTCGCGATCGCCGAGATCTTCAATCCCACATTAGAGAAGCTCCAGAGAGTCAGAGTTCAGCTACCTGGATTGCCACCAGAGTTGCTAAGGAAACTAGAAGAGAAGAACATAGACTTTGCAGCTCATCCAAGGGAAGTGGATTGGTGGCCTGCAGTACTGGACTTGTTGGGGAATTTTGCTTTTCCATTGATACTTCTTGGGATATTGCTTTTGAGGAGTTCATCACCAAACATACCAGGAGGCCCCAACTTACCTTTTGGACTTGGAAGGAGCAAAGCCAAATTCCAAATGGAACCGAATACCGGGGTAACATTTGATGATGTGGCTGGGGTCGATGAAGCAAAGCAAGATTTCCAAGAGATTGTTGAATTTCTCAAAACTCCAGAGAAGTTTGCTGCGGTTGGTGCAAGAATTCCCAAAGGGGTTCTTTTAGTAGGGCCACCAGGGACCGGAAAGACATTGCTGGGTAAGGCCATTGCAGGAGAGGCAGCGGTGCCTTTCTTTTCTCTGTCAGGGTCAGAGTTCATTGAGATGTTTGTAGGAGTAGGAGCTTCTAGAGTAAGAGACTTGTTCAACAAGGCAAAAGAGAATTCGCCGTGCTTGGTTTTTATTGATGAAATTGATGCTGTTGGGAGGCAAAGGGGGACAGGAATTGGTGGAGGAAATGATGAGAGGGAGCAGACATTGAATCAACTGCTTACTGAAATGGATGGATTTAGTGGGAACAGTGGAGTAATTGTTATTGCTGCTACTAATCGCCCTGAAATTCTTGATTCTGCTTTGCTTAGGCCCGGAAGGTTTGACAGACAAGTCACAGTTGGATTGCCAGATATTAAGGGAAGAAACGATATACTAAAGGTGCATAGTAACAACAAGAAGCTTGATAAGAGTGTTTCTCTTGATATTATTGCTATGAGAACTCCTGGCTTCAGCGGTGCAGATCTTGCAAACCTCATGAATGAATCTGCGATTCTTGCTGGTAGGAGAGGCAAAGATAAGATAACAATGAAAGAAATAGATGATTCGATTGATCGAATTGTTGCAGGGATGGAAGGGACCAAAATGACTGATGGAAAGAACAAAACTCTTGTGGCTTACCATGAAGTAGGCCACGCCATTTGCGCAACACTGACTCCAGGCCATGATGCAGTGCAGAAGGTCTCTCTTATTCCCCGAGGCCAAGCTCGAGGTCTTACATGGTTCTTACCGGGTGAAGATCCCGCTCTTATTTCTAAGCAACAACTGTTTGCTAGAATAGTTGGAGGTCTAGGAGGTAGAGCAGCAGAAGAAGTAATTTTTGGAGAGCCAGAAATAACAACCGGTGCAGCAGGAGACTTGCAGCAGGTCACACAAATAGCAAGACAGATGGTAACAATGTTTGGCATGTCCGAGATTGGACCATGGGCATTGACAGACCCAGCGGCCCAGAGCAGTGATGTAGTGTTGAGGATGCTAGCAAGGAACACCATGTCCGAAAAACTTGCAGAGGATATTGACTTGTCAGTGAGACATATAGTTGAAAGTGCATATGAGGTTGCAAAGAAGCATATAAGGAATAACCGGGAAGCCATTGATAATTTAGTAGATGTGCTATTAGAAAAGGAGATCCTCACCGGAGATGAGTTCAGGGCAATTCTGTCTGAATTTACTGATACTTCTATGGTAGAGCCGGATAGAAACTCGCACCAATGTCTCTTCCTCCTCAACCTCTGCCTCTCCTTCAAACCCTTCTCTCAAATTCACGCCCAAATCCAACTCTCTGGCCTCCACAGAGACCCCTACCTCCTCACCCAACTCATCCGCTTCTGCGCTTTATCTCCCGCCAAAAACTTCACCTACGCTCGAACCCTCCTCCACCACTCCCATGCTTCGCCGCCGTCTTCCTGGAACTTCCTCATCCGAGGCTACGCCTCCAGCGACTCCCCCAGAGAGGCCATCTGGGCTTTTCGCGCAATGCTCCGCCGCGGAGTTAGGCCCAACAAGCTTACCTTCCCTTTTCTTCTCAAGTCATGCGCCATGGTCCCGGCTCTGAAAGAAGGGAGGCAAGCTCATGGATATGTTTTCAAGTTGGGTTTGGACTGTGATTTGTATGTTCAGAACAATTTGGTTCATTTTTATGGGGATTGCAAGAAGATCAAGGACGCAGTCAAGGTGTTCGATGGAATGTCTGAGAGGAGCGTTGTTTCGTGGAATGCGGTTGTGACTGCTTGCGTTGATAATTTGCGGTTGAGTGATGGGATTGTGTATTTTGTGAAGATGAGGGAGTGTGGGTTTGAGCCGGATGAGACTACGATGGTGGTCGTGTTGAATGCGTGCTCCGAGCTTGGGAACTTGAGCTTAGGACGAGGGGTTCACTCCTATGTAATTGCGAGGGGCTTGGTCTTGAATCGTCAGTTGGGTACTGCGCTTGTCGACATGTATGCCAAATCTGGGGCTCTGGGTTATGCCAGGTTGGTTTTTGATAGAATGGAGGGGCGGAATGTGTGGACATGGAGTGCAATGATCCTAGGCCTAGCTCAGCATGGGTTTGCCAAGGAAGCGCTTGAGCTTTTCCCAAACATGTTGAACTCTTCCATATGCCCAAATTATGTCACATTTCTCGGAGTCCTCTGTGCTTGTAGCCACGCTGGACTGGTGGATGATGGATACCGATACTTTCATGAAATGGAACATGTTCATGGAATTACACCTATGATGATACATTATGGTGCCATGGTGGATATGTTAGGGCGTTCTGGCCGTCTGAAGGAGGCTTATAGATTCATGAAGAGCATGCCCTTTGAACCTGATCCCATAATATGCAGAACATTGCTTAGTGCATGCAGTACTCATGATGTAAATGACGAACTAGGGGTAGGAAATAAAGTTAGAGAGAAATTGCTTGAATTGGAGCCGAGTAGGAGTGGGAATTTTGTGATGGTGGCAAACTTTTTGGCTGAAACTGGTATGTGGGACAAAGCAGCCAATTTGAGGAAGGTCATGAAAGAAAAACGGATGAAGAAGAGAGCAGGGGAGAGCAGCGTTGAGTTGGGCGGATCCATCCATAAGTTCTTTTCTGGCTATGATTCTCATTCTGACTATGAGGATATCTATCGGATACTAGATATATTGAGCTTGCACATGAAGTTGGTTGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009668 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext PPR Peptidase_M41

Protein Analysis

1156

Amino Acids

127.43

Weight (kDa)

6.89

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsH_ext	PF06480	80 - 153	2.3e-07	FtsH Extracellular
AAA	PF00004	252 - 384	9.2e-45	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	407 - 450	1.6e-12	AAA+ lid domain
Peptidase_M41	PF01434	465 - 655	4.3e-67	Peptidase family M41
PPR_2	PF13041	738 - 782	3.3e-07	PPR repeat family
PPR_2	PF13041	836 - 883	4.5e-06	PPR repeat family
E_motif	PF20431	1060 - 1119	1.4e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15250 AT5G15250
fragaria_vesca	FvH4_6g48450 FvH4_6g48450 FvH4_6g48450
malus_domestica	MD09G1051800.v1.1
prunus_persica	Prupe.3G266900_v2.0.a1
pyrus_communis	pycom111g04310
rosa_chinensis	RchiOBHm_Chr2g0168361
rosa_laevigata	RLG00000021770
rosa_multiflora	Rmu_sc0003354.1_g000018
rosa_roxburghii	Rroxscaffold_2G00083110
rosa_rugosa	Rorug02G0533200.1
rosa_samantha	Rh2AG602300 Rh2BG615600 Rh2CG583300
rosa_wichuraiana	Rw0G019810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
AasI	GACNNNNNNGTC	1 cut(s)	1139
Acc16I	TGCGCA	1 cut(s)	1453
Acc36I	ACCTGC	2 cut(s)	16, 1663
AccB1I	GGYRCC	2 cut(s)	823, 3038
AccBSI	CCGCTC	1 cut(s)	1553
AccI	GTMKAC	2 cut(s)	306, 2742
AccII	CGCG	3 cut(s)	335, 2280, 2295
AclWI	GGATC	6 cut(s)	1541, 1930, 2827, 3113, 3360, 3373
AcoI	YGGCCR	1 cut(s)	3067
AcuI	CTGAAG	2 cut(s)	1243, 3095
AfaI	GTAC	4 cut(s)	278, 486, 2731, 3157
AfeI	AGCGCT	1 cut(s)	2871
AfiI	CCNNNNNNNGG	7 cut(s)	632, 779, 2260, 2655, 2760, 3076, 3300
AflIII	ACRYGT	4 cut(s)	2745, 2889, 3001, 3465
AgeI	ACCGGT	1 cut(s)	1649
AjnI	CCWGG	9 cut(s)	51, 175, 394, 565, 772, 1252, 1465, 2213, 2777
AjuI	GAANNNNNNNTTGG	4 cut(s)	1611, 1643, 2708, 2740
AloI	GAACNNNNNNTCC	4 cut(s)	1784, 1816, 2664, 2696
Alw21I	GWGCWC	1 cut(s)	2648
Alw26I	GTCTC	9 cut(s)	29, 114, 888, 1495, 1656, 1831, 2027, 2097, 2609
AlwI	GGATC	6 cut(s)	1541, 1930, 2827, 3113, 3360, 3373
Ama87I	CYCGRG	2 cut(s)	1503, 1515
Aor51HI	AGCGCT	1 cut(s)	2871
ApeKI	GCWGC	9 cut(s)	449, 725, 818, 1076, 1610, 1655, 1669, 3290, 3348
AsiGI	ACCGGT	1 cut(s)	1649
AsiSI	GCGATCGC	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	3003
AspA2I	CCTAGG	1 cut(s)	2836
AspLEI	GCGC	6 cut(s)	1454, 2141, 2282, 2345, 2737, 2872
AsuC2I	CCSGG	5 cut(s)	634, 1122, 1539, 1892, 2354
AsuHPI	GGTGA	6 cut(s)	188, 546, 1553, 1933, 2110, 2155
AsuNHI	GCTAGC	1 cut(s)	1783
AvaI	CYCGRG	2 cut(s)	1503, 1515
AvaII	GGWCC	5 cut(s)	179, 777, 1386, 1727, 2350
AvrII	CCTAGG	1 cut(s)	2836
BamHI	GGATCC	1 cut(s)	3365
BanI	GGYRCC	2 cut(s)	823, 3038
BanII	GRGCYC	2 cut(s)	230, 2767
BbsI	GAAGAC	1 cut(s)	2202
Bbv12I	GWGCWC	1 cut(s)	2648
BbvI	GCAGC	9 cut(s)	461, 712, 830, 1063, 1622, 1667, 1681, 3302, 3360
BceAI	ACGGC	3 cut(s)	910, 2191, 3054
BcgI	CGANNNNNNTGC	4 cut(s)	1793, 1827, 2732, 2766
BciT130I	CCWGG	9 cut(s)	53, 177, 396, 567, 774, 1254, 1467, 2215, 2779
BciVI	GTATCC	2 cut(s)	2969, 3420
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	5 cut(s)	634, 1122, 1539, 1892, 2354
BcoDI	GTCTC	9 cut(s)	29, 114, 888, 1495, 1656, 1831, 2027, 2097, 2609
BfaI	CTAG	9 cut(s)	425, 885, 1581, 1598, 1784, 2837, 2843, 3179, 3431
BfmI	CTRYAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	2873
BfuAI	ACCTGC	2 cut(s)	16, 1663
BfuI	GTATCC	2 cut(s)	2969, 3420
BglI	GCCNNNNNGGC	1 cut(s)	2270
BglII	AGATCT	3 cut(s)	137, 345, 1270
BlnI	CCTAGG	1 cut(s)	2836
BlpI	GCTNAGC	2 cut(s)	210, 2847
BmcAI	AGTACT	3 cut(s)	278, 486, 3157
Bme18I	GGWCC	5 cut(s)	179, 777, 1386, 1727, 2350
BmeT110I	CYCGRG	2 cut(s)	1503, 1515
BmsI	GCATC	4 cut(s)	245, 943, 1465, 1770
BmtI	GCTAGC	1 cut(s)	1787
BpiI	GAAGAC	1 cut(s)	2202
BplI	GAGNNNNNCTC	4 cut(s)	1210, 1242, 2362, 2394
BpmI	CTGGAG	5 cut(s)	21, 356, 696, 1449, 2227
Bpu10I	CCTNAGC	4 cut(s)	216, 416, 1115, 2668
Bpu1102I	GCTNAGC	2 cut(s)	210, 2847
BpuEI	CTTGAG	4 cut(s)	247, 2318, 2683, 2894
BpuMI	CCSGG	5 cut(s)	634, 1122, 1539, 1892, 2354
BsaBI	GATNNNNATC	1 cut(s)	3420
BsaI	GGTCTC	2 cut(s)	1495, 2097
BsaWI	WCCGGW	3 cut(s)	779, 1649, 1943
BsaXI	ACNNNNNCTCC	6 cut(s)	1053, 1083, 1447, 1477, 2585, 2615
Bsc4I	CCNNNNNNNGG	7 cut(s)	632, 779, 2260, 2655, 2760, 3076, 3300
Bse118I	RCCGGY	1 cut(s)	1649
Bse1I	ACTGG	4 cut(s)	38, 492, 2967, 3277
Bse3DI	GCAATG	5 cut(s)	788, 804, 2289, 2835, 3137
Bse8I	GATNNNNATC	1 cut(s)	3420
BseBI	CCWGG	9 cut(s)	53, 177, 396, 567, 774, 1254, 1467, 2215, 2779
BseJI	GATNNNNATC	1 cut(s)	3420
BseLI	CCNNNNNNNGG	7 cut(s)	632, 779, 2260, 2655, 2760, 3076, 3300
BseMI	GCAATG	5 cut(s)	788, 804, 2289, 2835, 3137
BseMII	CTCAG	4 cut(s)	201, 207, 2490, 2861
BseNI	ACTGG	4 cut(s)	38, 492, 2967, 3277
BseRI	GAGGAG	5 cut(s)	559, 2021, 2105, 2171, 2518
BseXI	GCAGC	9 cut(s)	461, 712, 830, 1063, 1622, 1667, 1681, 3302, 3360
BseYI	CCCAGC	3 cut(s)	656, 793, 1747
BsgI	GTGCAG	3 cut(s)	1287, 1502, 1674
Bsh1236I	CGCG	3 cut(s)	335, 2280, 2295
Bsh1285I	CGRYCG	1 cut(s)	339
BshNI	GGYRCC	2 cut(s)	823, 3038
BshTI	ACCGGT	1 cut(s)	1649
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	2648
BsiHKCI	CYCGRG	2 cut(s)	1503, 1515
BslFI	GGGAC	5 cut(s)	790, 988, 1399, 2336, 3296
BslI	CCNNNNNNNGG	7 cut(s)	632, 779, 2260, 2655, 2760, 3076, 3300
BsmAI	GTCTC	9 cut(s)	29, 114, 888, 1495, 1656, 1831, 2027, 2097, 2609
BsmFI	GGGAC	5 cut(s)	790, 988, 1399, 2336, 3296
BsmI	GAATGC	2 cut(s)	2527, 2644
Bso31I	GGTCTC	2 cut(s)	1495, 2097
BsoBI	CYCGRG	2 cut(s)	1503, 1515
Bsp1286I	GDGCHC	3 cut(s)	230, 2648, 2767
Bsp1720I	GCTNAGC	2 cut(s)	210, 2847
Bsp19I	CCATGG	3 cut(s)	1730, 2346, 3042
Bsp68I	TCGCGA	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	202, 208, 2491, 2860
BspFNI	CGCG	3 cut(s)	335, 2280, 2295
BspHI	TCATGA	5 cut(s)	1284, 2989, 3093, 3160, 3309
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	2 cut(s)	16, 1663
BspOI	GCTAGC	1 cut(s)	1787
BspPI	GGATC	6 cut(s)	1541, 1930, 2827, 3113, 3360, 3373
BspQI	GCTCTTC	1 cut(s)	3092
BspT107I	GGYRCC	2 cut(s)	823, 3038
BspTNI	GGTCTC	2 cut(s)	1495, 2097
BsrBI	CCGCTC	1 cut(s)	1553
BsrDI	GCAATG	5 cut(s)	788, 804, 2289, 2835, 3137
BsrFI	RCCGGY	1 cut(s)	1649
BsrI	ACTGG	4 cut(s)	38, 492, 2967, 3277
BssAI	RCCGGY	1 cut(s)	1649
BssT1I	CCWWGG	7 cut(s)	63, 458, 1730, 2346, 2836, 2862, 3042
Bst2UI	CCWGG	9 cut(s)	53, 177, 396, 567, 774, 1254, 1467, 2215, 2779
Bst4CI	ACNGT	5 cut(s)	331, 1058, 1147, 1575, 2411
Bst6I	CTCTTC	5 cut(s)	423, 2030, 2905, 3092, 3326
BstAPI	GCANNNNNTGC	1 cut(s)	1274
BstC8I	GCNNGC	8 cut(s)	480, 1785, 2376, 2539, 2644, 3104, 3151, 3446
BstDEI	CTNAG	9 cut(s)	210, 216, 416, 1115, 1563, 2499, 2668, 2847, 3143
BstDSI	CCRYGG	4 cut(s)	1730, 2293, 2346, 3042
BstFNI	CGCG	3 cut(s)	335, 2280, 2295
BstH2I	RGCGCY	1 cut(s)	2873
BstHHI	GCGC	6 cut(s)	1454, 2141, 2282, 2345, 2737, 2872
BstMAI	GTCTC	9 cut(s)	29, 114, 888, 1495, 1656, 1831, 2027, 2097, 2609
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	9 cut(s)	734, 815, 1274, 1304, 1451, 2270, 2279, 2311, 2867
BstNI	CCWGG	9 cut(s)	53, 177, 396, 567, 774, 1254, 1467, 2215, 2779
BstNSI	RCATGY	7 cut(s)	1717, 2749, 2893, 3005, 3106, 3153, 3469
BstSFI	CTRYAG	1 cut(s)	480
BstUI	CGCG	3 cut(s)	335, 2280, 2295
BstV1I	GCAGC	9 cut(s)	461, 712, 830, 1063, 1622, 1667, 1681, 3302, 3360
BstV2I	GAAGAC	1 cut(s)	2202
BstX2I	RGATCY	6 cut(s)	137, 345, 1270, 1546, 1935, 3365
BstXI	CCANNNNNNTGG	1 cut(s)	2090
BstYI	RGATCY	6 cut(s)	137, 345, 1270, 1546, 1935, 3365
BsuI	GTATCC	2 cut(s)	2969, 3420
BtgI	CCRYGG	4 cut(s)	1730, 2293, 2346, 3042
BtsI	GCAGTG	2 cut(s)	1485, 1768
BtsIMutI	CAGTG	5 cut(s)	1063, 1457, 1485, 1768, 1839
BtuMI	TCGCGA	1 cut(s)	335
BveI	ACCTGC	2 cut(s)	16, 1663
Cac8I	GCNNGC	8 cut(s)	480, 1785, 2376, 2539, 2644, 3104, 3151, 3446
CciI	TCATGA	5 cut(s)	1284, 2989, 3093, 3160, 3309
CfoI	GCGC	6 cut(s)	1454, 2141, 2282, 2345, 2737, 2872
Cfr10I	RCCGGY	1 cut(s)	1649
Cfr42I	CCGCGG	1 cut(s)	2296
CseI	GACGC	1 cut(s)	2480
Csp6I	GTAC	4 cut(s)	277, 485, 2730, 3156
CspAI	ACCGGT	1 cut(s)	1649
CspCI	CAANNNNNGTGG	6 cut(s)	393, 428, 447, 482, 1430, 1465
CviQI	GTAC	4 cut(s)	277, 485, 2730, 3156
DdeI	CTNAG	9 cut(s)	210, 216, 416, 1115, 1563, 2499, 2668, 2847, 3143
DrdI	GACNNNNNNGTC	1 cut(s)	1139
DseDI	GACNNNNNNGTC	1 cut(s)	1139
EaeI	YGGCCR	1 cut(s)	3067
Eam1104I	CTCTTC	5 cut(s)	423, 2030, 2905, 3092, 3326
EarI	CTCTTC	5 cut(s)	423, 2030, 2905, 3092, 3326
EciI	GGCGGA	3 cut(s)	2279, 2821, 3378
Eco130I	CCWWGG	7 cut(s)	63, 458, 1730, 2346, 2836, 2862, 3042
Eco147I	AGGCCT	1 cut(s)	2841
Eco24I	GRGCYC	2 cut(s)	230, 2767
Eco31I	GGTCTC	2 cut(s)	1495, 2097
Eco32I	GATATC	1 cut(s)	3418
Eco47I	GGWCC	5 cut(s)	179, 777, 1386, 1727, 2350
Eco47III	AGCGCT	1 cut(s)	2871
Eco57I	CTGAAG	2 cut(s)	1243, 3095
Eco88I	CYCGRG	2 cut(s)	1503, 1515
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRI	GAATTC	2 cut(s)	741, 919
EcoRII	CCWGG	9 cut(s)	51, 175, 394, 565, 772, 1252, 1465, 2213, 2777
EcoRV	GATATC	1 cut(s)	3418
EcoT14I	CCWWGG	7 cut(s)	63, 458, 1730, 2346, 2836, 2862, 3042
EcoT38I	GRGCYC	2 cut(s)	230, 2767
ErhI	CCWWGG	7 cut(s)	63, 458, 1730, 2346, 2836, 2862, 3042
FalI	AAGNNNNNCTT	4 cut(s)	741, 773, 2303, 2335
FaqI	GGGAC	5 cut(s)	790, 988, 1399, 2336, 3296
FauI	CCCGC	2 cut(s)	1558, 2158
FauNDI	CATATG	2 cut(s)	1858, 2906
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	2 cut(s)	306, 2742
FriOI	GRGCYC	2 cut(s)	230, 2767
FspBI	CTAG	9 cut(s)	425, 885, 1581, 1598, 1784, 2837, 2843, 3179, 3431
FspI	TGCGCA	1 cut(s)	1453
GlaI	GCGC	6 cut(s)	1453, 2140, 2281, 2344, 2736, 2871
GsaI	CCCAGC	3 cut(s)	660, 797, 1751
GsuI	CTGGAG	5 cut(s)	21, 356, 696, 1449, 2227
HaeII	RGCGCY	1 cut(s)	2873
HgaI	GACGC	1 cut(s)	2480
HhaI	GCGC	6 cut(s)	1454, 2141, 2282, 2345, 2737, 2872
Hin6I	GCGC	6 cut(s)	1452, 2139, 2280, 2343, 2735, 2870
HinP1I	GCGC	6 cut(s)	1452, 2139, 2280, 2343, 2735, 2870
HincII	GTYRAC	2 cut(s)	2743, 3463
HindII	GTYRAC	2 cut(s)	2743, 3463
HindIII	AAGCTT	2 cut(s)	1208, 2312
HphI	GGTGA	6 cut(s)	188, 546, 1553, 1933, 2110, 2155
Hpy166II	GTNNAC	5 cut(s)	307, 2683, 2743, 2817, 3463
Hpy8I	GTNNAC	5 cut(s)	307, 2683, 2743, 2817, 3463
HpyCH4III	ACNGT	5 cut(s)	331, 1058, 1147, 1575, 2411
HpyF10VI	GCNNNNNNNGC	9 cut(s)	734, 815, 1274, 1304, 1451, 2270, 2279, 2311, 2867
HpyF3I	CTNAG	9 cut(s)	210, 216, 416, 1115, 1563, 2499, 2668, 2847, 3143
HspAI	GCGC	6 cut(s)	1452, 2139, 2280, 2343, 2735, 2870
Ksp22I	TGATCA	1 cut(s)	316
KspI	CCGCGG	1 cut(s)	2296
LguI	GCTCTTC	1 cut(s)	3092
LmnI	GCTCC	9 cut(s)	290, 375, 600, 878, 1006, 2292, 2505, 2651, 3220
Lsp1109I	GCAGC	9 cut(s)	461, 712, 830, 1063, 1622, 1667, 1681, 3302, 3360
LweI	GCATC	4 cut(s)	245, 943, 1465, 1770
MaeI	CTAG	9 cut(s)	425, 885, 1581, 1598, 1784, 2837, 2843, 3179, 3431
MaeIII	GTNAC	9 cut(s)	3, 101, 637, 1141, 1196, 1675, 1699, 2530, 2920
MbiI	CCGCTC	1 cut(s)	1553
MflI	RGATCY	6 cut(s)	137, 345, 1270, 1546, 1935, 3365
MhlI	GDGCHC	3 cut(s)	230, 2648, 2767
MlyI	GAGTC	5 cut(s)	159, 387, 1456, 2243, 2943
MmeI	TCCRAC	3 cut(s)	1129, 1570, 2107
MroXI	GAANNNNTTC	1 cut(s)	3003
MseI	TTAA	2 cut(s)	146, 1164
MslI	CAYNNNNRTG	7 cut(s)	860, 2193, 2385, 2445, 2688, 3006, 3036
MspA1I	CMGCKG	4 cut(s)	821, 1263, 1751, 2295
Mva1269I	GAATGC	2 cut(s)	2527, 2644
MvaI	CCWGG	9 cut(s)	53, 177, 396, 567, 774, 1254, 1467, 2215, 2779
MvnI	CGCG	3 cut(s)	335, 2280, 2295
MwoI	GCNNNNNNNGC	9 cut(s)	734, 815, 1274, 1304, 1451, 2270, 2279, 2311, 2867
NciI	CCSGG	5 cut(s)	634, 1122, 1539, 1892, 2354
NcoI	CCATGG	3 cut(s)	1730, 2346, 3042
NdeI	CATATG	2 cut(s)	1858, 2906
NheI	GCTAGC	1 cut(s)	1783
NmeAIII	GCCGAG	2 cut(s)	367, 3249
NmuCI	GTSAC	6 cut(s)	3, 101, 1141, 1675, 2530, 2920
NruI	TCGCGA	1 cut(s)	335
NsbI	TGCGCA	1 cut(s)	1453
NspI	RCATGY	7 cut(s)	1717, 2749, 2893, 3005, 3106, 3153, 3469
PaeI	GCATGC	2 cut(s)	3106, 3153
PaeR7I	CTCGAG	1 cut(s)	1515
PagI	TCATGA	5 cut(s)	1284, 2989, 3093, 3160, 3309
PaqCI	CACCTGC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	2841
PciI	ACATGT	4 cut(s)	2745, 2889, 3001, 3465
PciSI	GCTCTTC	1 cut(s)	3092
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 2244
PctI	GAATGC	2 cut(s)	2527, 2644
PdmI	GAANNNNTTC	1 cut(s)	3003
PfeI	GAWTC	9 cut(s)	267, 1018, 1103, 1292, 1300, 1352, 2716, 3090, 3395
PflFI	GACNNNGTC	1 cut(s)	2474
PfoI	TCCNGGA	1 cut(s)	2213
PinAI	ACCGGT	1 cut(s)	1649
Ple19I	CGATCG	1 cut(s)	339
PleI	GAGTC	5 cut(s)	159, 386, 1456, 2243, 2942
PpsI	GAGTC	5 cut(s)	159, 386, 1456, 2243, 2942
PscI	ACATGT	4 cut(s)	2745, 2889, 3001, 3465
Psp6I	CCWGG	9 cut(s)	51, 175, 394, 565, 772, 1252, 1465, 2213, 2777
PspFI	CCCAGC	3 cut(s)	656, 793, 1747
PspGI	CCWGG	9 cut(s)	51, 175, 394, 565, 772, 1252, 1465, 2213, 2777
PspXI	VCTCGAGB	1 cut(s)	1515
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	6 cut(s)	137, 345, 1270, 1546, 1935, 3365
PsyI	GACNNNGTC	1 cut(s)	2474
PvuI	CGATCG	1 cut(s)	339
RgaI	GCGATCGC	1 cut(s)	339
RruI	TCGCGA	1 cut(s)	335
RsaI	GTAC	4 cut(s)	278, 486, 2731, 3157
RsaNI	GTAC	4 cut(s)	277, 485, 2730, 3156
RseI	CAYNNNNRTG	7 cut(s)	860, 2193, 2385, 2445, 2688, 3006, 3036
SacII	CCGCGG	1 cut(s)	2296
SalI	GTCGAC	1 cut(s)	2741
SapI	GCTCTTC	1 cut(s)	3092
SaqAI	TTAA	2 cut(s)	146, 1164
ScaI	AGTACT	3 cut(s)	278, 486, 3157
SchI	GAGTC	5 cut(s)	159, 387, 1456, 2243, 2943
SduI	GDGCHC	3 cut(s)	230, 2648, 2767
SfaAI	GCGATCGC	1 cut(s)	339
SfaNI	GCATC	4 cut(s)	245, 943, 1465, 1770
SfcI	CTRYAG	1 cut(s)	480
Sfr274I	CTCGAG	1 cut(s)	1515
Sfr303I	CCGCGG	1 cut(s)	2296
SgfI	GCGATCGC	1 cut(s)	339
SgrBI	CCGCGG	1 cut(s)	2296
SinI	GGWCC	5 cut(s)	179, 777, 1386, 1727, 2350
SlaI	CTCGAG	1 cut(s)	1515
SmiMI	CAYNNNNRTG	7 cut(s)	860, 2193, 2385, 2445, 2688, 3006, 3036
SmlI	CTYRAG	5 cut(s)	262, 1515, 2333, 2662, 2873
SmoI	CTYRAG	5 cut(s)	262, 1515, 2333, 2662, 2873
SphI	GCATGC	2 cut(s)	3106, 3153
SseBI	AGGCCT	1 cut(s)	2841
SspMI	CTAG	9 cut(s)	425, 885, 1581, 1598, 1784, 2837, 2843, 3179, 3431
StuI	AGGCCT	1 cut(s)	2841
StyI	CCWWGG	7 cut(s)	63, 458, 1730, 2346, 2836, 2862, 3042
TaaI	ACNGT	5 cut(s)	331, 1058, 1147, 1575, 2411
TaqI	TCGA	8 cut(s)	133, 663, 1355, 1363, 1516, 2173, 2487, 2742
TatI	WGTACW	3 cut(s)	276, 484, 3155
TauI	GCSGC	3 cut(s)	1754, 2206, 2295
TfiI	GAWTC	9 cut(s)	267, 1018, 1103, 1292, 1300, 1352, 2716, 3090, 3395
Tru1I	TTAA	2 cut(s)	146, 1164
Tru9I	TTAA	2 cut(s)	146, 1164
TscAI	CASTG	5 cut(s)	1063, 1464, 1485, 1768, 1839
TseFI	GTSAC	6 cut(s)	3, 101, 1141, 1675, 2530, 2920
TseI	GCWGC	9 cut(s)	449, 725, 818, 1076, 1610, 1655, 1669, 3290, 3348
Tsp45I	GTSAC	6 cut(s)	3, 101, 1141, 1675, 2530, 2920
TspGWI	ACGGA	2 cut(s)	339, 3337
TspRI	CASTG	5 cut(s)	1063, 1464, 1485, 1768, 1839
Tth111I	GACNNNGTC	1 cut(s)	2474
VpaK11BI	GGWCC	5 cut(s)	179, 777, 1386, 1727, 2350
XbaI	TCTAGA	1 cut(s)	884
XceI	RCATGY	7 cut(s)	1717, 2749, 2893, 3005, 3106, 3153, 3469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XhoI	CTCGAG	1 cut(s)	1515
XmaJI	CCTAGG	1 cut(s)	2836
XmiI	GTMKAC	2 cut(s)	306, 2742
XmnI	GAANNNNTTC	1 cut(s)	3003
XspI	CTAG	9 cut(s)	425, 885, 1581, 1598, 1784, 2837, 2843, 3179, 3431
ZrmI	AGTACT	3 cut(s)	278, 486, 3157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.