Rroxscaffold_2G00089980

Protein of unknown function, DUF604

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009220
Physical Location & Seq
Reverse (-)
11841237 .. 11844243
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089980.1

Sequence Viewer

Length: 849 bp
ATGCAGAATGTCAAGTACGGGTTCGACATGGCGTTTGGCGGCGGCGGATTCGCCATCAGCCATTCTCTGGCTAAGGTTCTGGCTAGGGTTTTCGACTCGTGCTTGATGAGGTACGGCCACTTGTATGGAAGTGATTCCCGCGTTTTTTCGTGCGTGGCGGAGCTCGGCATTGGGTTAACCCATGAACCTGGGTTTCATCAGGTTGATATGCGGGGTAATTTGTTTGGAATGCTATCTGCACATCCATTGTCACCTTTGGTTTCGCTTCACCATTTGGATGCTGCAGATCCGATCTTCCCTAACATGAACAACACTCAAGCTTTGGAACATCTTTTTGAAGCTGTGAATGCTGATCCTGCCAGGATATTGCAGCAAACTGTATGCTATGACCGTACACATTCATTGACTGTTTCGGTTGCATGGGGTTATGCCATACAGGTGTATGATGGCAATGAACTTCTTCCAGATCTCCTTTCACTGCAGAAAACTTTTATGCCATGGAGGAGGAGCCGTAGTGTTGAGGCAAGTCAGTACATGTTCAAAATGAGAGACTATCCTAGAGATACATGTAAAAGACCCCCTATATTTTATTTGGAAAGCCTCGTCTCTAATAACCATGGCATCTGGAGCAACTACACTAGGCACAATGTGGAAAACTGCTCTAAAGCAAATGCAATAAAGAACCTGGAACGTATCAGAGTAATTTCACAGAAGCTAGACCTTGATGTTGAAGAGATGAAGGCTCCACGTCGTCAGTGCTGCGACATTTTGCAATCGTCTTTCAATGATTCAATGACTATTAATATTAGACGATGCAGAGATGATGAACTAATATCCATGAATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604

Protein Analysis

282

Amino Acids

32.13

Weight (kDa)

6.82

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF604 PF04646 2 - 254 6e-104 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 67
AccII CGCG 1 cut(s) 141
AciI CCGC 6 cut(s) 39, 42, 45, 139, 158, 211
AclWI GGATC 2 cut(s) 281, 347
AcoI YGGCCR 1 cut(s) 115
AdeI CACNNNGTG 1 cut(s) 649
AfaI GTAC 4 cut(s) 17, 113, 394, 533
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 2 cut(s) 534, 566
AgsI TTSAA 5 cut(s) 338, 541, 731, 784, 792
AjiI CACGTC 1 cut(s) 749
AjnI CCWGG 3 cut(s) 187, 359, 684
AluBI AGCT 4 cut(s) 163, 320, 341, 715
AluI AGCT 4 cut(s) 163, 320, 341, 715
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 2 cut(s) 543, 610
AlwI GGATC 2 cut(s) 281, 347
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 281, 370, 759
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 2 cut(s) 133, 459
AsuHPI GGTGA 2 cut(s) 243, 260
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 268, 382, 746
BccI CCATC 2 cut(s) 62, 440
BceAI ACGGC 2 cut(s) 130, 495
BciT130I CCWGG 3 cut(s) 189, 361, 686
BcoDI GTCTC 2 cut(s) 543, 610
BfaI CTAG 5 cut(s) 84, 558, 639, 716, 847
BfmI CTRYAG 2 cut(s) 282, 479
BglII AGATCT 1 cut(s) 466
BisI GCNGC 5 cut(s) 40, 43, 282, 371, 760
BlsI GCNGC 5 cut(s) 41, 44, 283, 372, 761
Bme1390I CCNGG 3 cut(s) 189, 361, 686
BmgBI CACGTC 1 cut(s) 749
BmiI GGNNCC 2 cut(s) 509, 744
BmrFI CCNGG 3 cut(s) 189, 361, 686
BmsI GCATC 3 cut(s) 268, 630, 803
BpmI CTGGAG 1 cut(s) 646
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 188, 497, 616
BsaXI ACNNNNNCTCC 4 cut(s) 496, 499, 526, 529
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 457
BseBI CCWGG 3 cut(s) 189, 361, 686
BseDI CCNNGG 3 cut(s) 188, 497, 616
BseGI GGATG 2 cut(s) 241, 283
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMI GCAATG 1 cut(s) 457
BseRI GAGGAG 2 cut(s) 517, 520
BseXI GCAGC 3 cut(s) 268, 382, 746
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 543, 610
BsmBI CGTCTC 1 cut(s) 610
BsmI GAATGC 2 cut(s) 234, 352
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 4 cut(s) 286, 291, 352, 466
Bsp19I CCATGG 2 cut(s) 497, 616
BspACI CCGC 6 cut(s) 39, 42, 45, 139, 158, 211
BspANI GGCC 1 cut(s) 117
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 509, 744
BspMAI CTGCAG 2 cut(s) 286, 483
BspPI GGATC 2 cut(s) 281, 347
BsrDI GCAATG 1 cut(s) 457
BssECI CCNNGG 3 cut(s) 188, 497, 616
BssMI GATC 4 cut(s) 286, 291, 352, 466
BssSI CACGAG 1 cut(s) 97
BssT1I CCWWGG 2 cut(s) 497, 616
Bst2BI CACGAG 1 cut(s) 97
Bst2UI CCWGG 3 cut(s) 189, 361, 686
Bst4CI ACNGT 3 cut(s) 379, 392, 409
Bst6I CTCTTC 1 cut(s) 726
BstDEI CTNAG 1 cut(s) 72
BstDSI CCRYGG 2 cut(s) 497, 616
BstF5I GGATG 2 cut(s) 241, 283
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 4 cut(s) 289, 294, 355, 469
BstMAI GTCTC 2 cut(s) 543, 610
BstMBI GATC 4 cut(s) 286, 291, 352, 466
BstMWI GCNNNNNNNGC 3 cut(s) 347, 356, 627
BstNI CCWGG 3 cut(s) 189, 361, 686
BstNSI RCATGY 2 cut(s) 538, 570
BstSCI CCNGG 3 cut(s) 187, 359, 684
BstSFI CTRYAG 2 cut(s) 282, 479
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 268, 382, 746
BstX2I RGATCY 2 cut(s) 286, 466
BstXI CCANNNNNNTGG 2 cut(s) 125, 188
BstYI RGATCY 2 cut(s) 286, 466
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 2 cut(s) 497, 616
BtrI CACGTC 1 cut(s) 749
BtsCI GGATG 2 cut(s) 241, 283
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 2 cut(s) 476, 761
Csp6I GTAC 4 cut(s) 16, 112, 393, 532
CviAII CATG 9 cut(s) 28, 182, 304, 420, 498, 535, 567, 617, 838
CviQI GTAC 4 cut(s) 16, 112, 393, 532
DdeI CTNAG 1 cut(s) 72
DpnI GATC 4 cut(s) 288, 293, 354, 468
DpnII GATC 4 cut(s) 286, 291, 352, 466
DraIII CACNNNGTG 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
EciI GGCGGA 2 cut(s) 60, 173
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 497, 616
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 163
EcoRII CCWGG 3 cut(s) 187, 359, 684
EcoT14I CCWWGG 2 cut(s) 497, 616
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 2 cut(s) 497, 616
Esp3I CGTCTC 1 cut(s) 610
FaeI CATG 9 cut(s) 31, 185, 307, 423, 501, 538, 570, 620, 841
FatI CATG 9 cut(s) 27, 181, 303, 419, 497, 534, 566, 616, 837
FauI CCCGC 2 cut(s) 146, 204
Fnu4HI GCNGC 5 cut(s) 40, 43, 282, 371, 760
FokI GGATG 2 cut(s) 228, 290
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 5 cut(s) 40, 43, 282, 371, 760
FspBI CTAG 5 cut(s) 84, 558, 639, 716, 847
GluI GCNGC 5 cut(s) 40, 43, 282, 371, 760
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 9 cut(s) 31, 185, 307, 423, 501, 538, 570, 620, 841
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 4 cut(s) 48, 95, 134, 788
HpaI GTTAAC 1 cut(s) 177
HphI GGTGA 2 cut(s) 243, 260
Hpy166II GTNNAC 2 cut(s) 177, 395
Hpy188I TCNGA 2 cut(s) 291, 698
Hpy188III TCNNGA 2 cut(s) 464, 625
Hpy8I GTNNAC 2 cut(s) 177, 395
Hpy99I CGWCG 1 cut(s) 753
HpyAV CCTTC 1 cut(s) 733
HpyCH4III ACNGT 3 cut(s) 379, 392, 409
HpyCH4IV ACGT 2 cut(s) 691, 748
HpyCH4V TGCA 9 cut(s) 4, 239, 284, 370, 419, 481, 674, 772, 816
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 356, 627
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 2 cut(s) 691, 748
Hsp92II CATG 9 cut(s) 31, 185, 307, 423, 501, 538, 570, 620, 841
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 4 cut(s) 286, 291, 352, 466
LmnI GCTCC 4 cut(s) 160, 507, 627, 748
Lsp1109I GCAGC 3 cut(s) 268, 382, 746
LweI GCATC 3 cut(s) 268, 630, 803
MaeI CTAG 5 cut(s) 84, 558, 639, 716, 847
MaeII ACGT 2 cut(s) 691, 748
MaeIII GTNAC 1 cut(s) 249
MalI GATC 4 cut(s) 288, 293, 354, 468
MboI GATC 4 cut(s) 286, 291, 352, 466
MboII GAAGA 3 cut(s) 286, 452, 743
MflI RGATCY 2 cut(s) 286, 466
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 2 cut(s) 217, 702
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 5 cut(s) 102, 495, 498, 514, 611
MroXI GAANNNNTTC 2 cut(s) 133, 459
MseI TTAA 2 cut(s) 176, 801
MslI CAYNNNNRTG 3 cut(s) 123, 276, 437
MspR9I CCNGG 3 cut(s) 189, 361, 686
Mva1269I GAATGC 2 cut(s) 234, 352
MvaI CCWGG 3 cut(s) 189, 361, 686
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 347, 356, 627
NcoI CCATGG 2 cut(s) 497, 616
NdeII GATC 4 cut(s) 286, 291, 352, 466
NlaIII CATG 9 cut(s) 31, 185, 307, 423, 501, 538, 570, 620, 841
NlaIV GGNNCC 2 cut(s) 509, 744
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 249
NspI RCATGY 2 cut(s) 538, 570
PciI ACATGT 2 cut(s) 534, 566
PctI GAATGC 2 cut(s) 234, 352
PdmI GAANNNNTTC 2 cut(s) 133, 459
PfeI GAWTC 3 cut(s) 48, 134, 788
PflMI CCANNNNNTGG 1 cut(s) 67
PkrI GCNGC 5 cut(s) 41, 44, 283, 372, 761
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 2 cut(s) 534, 566
PshBI ATTAAT 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 3 cut(s) 187, 359, 684
PspGI CCWGG 3 cut(s) 187, 359, 684
PspN4I GGNNCC 2 cut(s) 509, 744
PstI CTGCAG 2 cut(s) 286, 483
PsuI RGATCY 2 cut(s) 286, 466
RsaI GTAC 4 cut(s) 17, 113, 394, 533
RsaNI GTAC 4 cut(s) 16, 112, 393, 532
RseI CAYNNNNRTG 3 cut(s) 123, 276, 437
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 176, 801
SatI GCNGC 5 cut(s) 40, 43, 282, 371, 760
Sau3AI GATC 4 cut(s) 286, 291, 352, 466
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 189, 361, 686
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 3 cut(s) 268, 630, 803
SfcI CTRYAG 2 cut(s) 282, 479
SmiMI CAYNNNNRTG 3 cut(s) 123, 276, 437
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 2 cut(s) 217, 702
SsiI CCGC 6 cut(s) 39, 42, 45, 139, 158, 211
SspI AATATT 1 cut(s) 805
SspMI CTAG 5 cut(s) 84, 558, 639, 716, 847
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 187, 359, 684
StyI CCWWGG 2 cut(s) 497, 616
TaaI ACNGT 3 cut(s) 379, 392, 409
TaiI ACGT 2 cut(s) 694, 751
TaqI TCGA 2 cut(s) 24, 93
TasI AATT 2 cut(s) 217, 702
TatI WGTACW 1 cut(s) 531
TauI GCSGC 2 cut(s) 42, 45
TfiI GAWTC 3 cut(s) 48, 134, 788
Tru1I TTAA 2 cut(s) 176, 801
Tru9I TTAA 2 cut(s) 176, 801
TscAI CASTG 2 cut(s) 483, 761
TseFI GTSAC 1 cut(s) 249
TseI GCWGC 3 cut(s) 281, 370, 759
Tsp45I GTSAC 1 cut(s) 249
TspDTI ATGAA 7 cut(s) 185, 198, 320, 390, 468, 752, 840
TspRI CASTG 2 cut(s) 483, 761
Van91I CCANNNNNTGG 1 cut(s) 67
VspI ATTAAT 1 cut(s) 801
XceI RCATGY 2 cut(s) 538, 570
XmnI GAANNNNTTC 2 cut(s) 133, 459
XspI CTAG 5 cut(s) 84, 558, 639, 716, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.