Rh2DG569400

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
80029636 .. 80031394
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG569400.1

Sequence Viewer

Length: 1467 bp
ATGTACCAAAAAACCAAAAGAAAGGCCAGTTCTTTCCTCAAAGCGATCCGATTCCGGTACCTCTCGCTTTCTCTCCCTTTCGTAATGCCCAAACCCCTAACTCCCTCCCGCCTCAAGGCCCTCCTCTTATTCCTCTCCCTCCTCCTCAACCTCTACCTCCTCCTCTCCCCCCACGCGCCTCAGTTCCTCCTCACGCGCTACTCCTCCTCTTCCTCCTCATCCTCACCCACCACGCGCCGCCACCTTCTCTTCGCCATCGCGTCCTCCTCACGCTCCTGGACCCGCCGCAAGCCCTACCTCCGCCTCTGGCACTCCCCCGCCTCCACCCGCGCCTTCGCCTTCCTCGACCGCCCCGCCGACGACGACGATGACGGCGCCGCGCCTGTGATCGTCTCCGGCGACACCTCCCGGTTCCCGTACACTCTCCGCGGCGGGCTCCGGTCCGCGATCCGCGTGGCGCGTGTGGTCAAGGAGATCGTCGATCGCGGCGAGGCGGGCGTCCGGTGGTACGTGTTCGGCGACGACGACACGGTGTTCTTCGTCGACAATTTGGTGAACACGCTGTCAAAGTACGATCACGATCGGTGGTTCTACATCGGGAGCAACTCCGAGAGCTACATGCAGAATGTCAAGTACGGGTTCGACATGGCGTTTGGCGGCGGCGGATTCGCCATCAGCCATTCTCTGGCTAAGGTTTTGGCTAGGGTTTTCGACTCGTGCTTGATGAGGTACGGCCACTTGTATGGAAGTGATTCCCGCGTTTTTTCGTGCGTGGCGGAGCTCGGCATTGGGTTAACCCATGAACCTGGGTTTCACCAGGTTGATATGCGGGGTAATTTGTTTGGAATGCTATCTGCACATCCATTGTCACCTTTGGTTTCGCTTCACCATTTGGATGCTGCAGATCCGATCTTCCCTAACATGAACAACACTCAAGCTTTGGAACATCTTTTTGAAGCTGTGAATGCTGATCCTGCCAGGATATTGCAGCAAACTGTATGCTATGACCGCACACATTCATTGACTGTTTCGGTTGCATGGGGTTATGCCATACAGGTGTATGATGGCAATGAACTTCTTCCAGATCTCCTTTCACTGCAGAAAACTTTTATGCCATGGAGGAGGAGCCGTAGTGTTGAGGCAAGTCAGTACATGTTCAAAATGAGAGACTATCCTAGAGATACATGTAAAAGACCCCCTATATTTTATTTGGAAAGCCTCGTCTCTAATAACCATGGCATCTGGAGCAACTACACCAGGCACAATGTGGAAAACTGCTCCAAAGCAAATGCAATAAAGAACCTGGAACATATCAGAGTAATTTCACAGAAGCTAGACCTTGATGTTGAAGAGATGAAGGCTCCACGTCGTCAGTGCTGCGACATTTTGCAATCGTCTTTTAATGATTCAATGACTATTAATATTAGACGATGCGGAGATGATGAACTAATATCCATGAATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

55.53

Weight (kDa)

9.12

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 77 - 274 8.5e-15 Fringe-like
DUF604 PF04646 208 - 460 3e-103 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 57
AccB1I GGYRCC 2 cut(s) 57, 374
AccB7I CCANNNNNTGG 1 cut(s) 685
AccI GTMKAC 1 cut(s) 543
AclWI GGATC 4 cut(s) 40, 442, 899, 965
AcoI YGGCCR 1 cut(s) 733
AcyI GRCGYC 2 cut(s) 375, 498
AdeI CACNNNGTG 1 cut(s) 1267
AfaI GTAC 8 cut(s) 5, 59, 419, 509, 572, 635, 731, 1151
AfiI CCNNNNNNNGG 2 cut(s) 115, 685
AflIII ACRYGT 3 cut(s) 510, 1152, 1184
AgsI TTSAA 4 cut(s) 956, 1159, 1349, 1410
AjiI CACGTC 1 cut(s) 1367
AjnI CCWGG 6 cut(s) 275, 805, 816, 977, 1256, 1302
AluBI AGCT 5 cut(s) 615, 781, 938, 959, 1333
AluI AGCT 5 cut(s) 615, 781, 938, 959, 1333
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 3 cut(s) 397, 1161, 1228
AlwI GGATC 4 cut(s) 40, 442, 899, 965
AoxI GGCC 3 cut(s) 24, 117, 733
ApeKI GCWGC 3 cut(s) 899, 988, 1377
ArsI GACNNNNNNTTYG 2 cut(s) 635, 667
AseI ATTAAT 1 cut(s) 1419
Asp700I GAANNNNTTC 2 cut(s) 751, 1077
Asp718I GGTACC 1 cut(s) 57
AspLEI GCGC 7 cut(s) 178, 198, 237, 332, 377, 382, 460
AspS9I GGNCC 3 cut(s) 118, 279, 441
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 5 cut(s) 216, 565, 806, 861, 878
AvaII GGWCC 2 cut(s) 279, 441
BanI GGYRCC 2 cut(s) 57, 374
BanII GRGCYC 2 cut(s) 438, 783
BauI CACGAG 1 cut(s) 715
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 3 cut(s) 886, 1000, 1364
BccI CCATC 3 cut(s) 263, 680, 1058
BceAI ACGGC 3 cut(s) 388, 748, 1113
BciT130I CCWGG 6 cut(s) 277, 807, 818, 979, 1258, 1304
BcnI CCSGG 1 cut(s) 409
BcoDI GTCTC 3 cut(s) 397, 1161, 1228
BfaI CTAG 4 cut(s) 702, 1176, 1334, 1465
BfmI CTRYAG 2 cut(s) 900, 1097
BfoI RGCGCY 1 cut(s) 378
BglII AGATCT 1 cut(s) 1084
Bme1390I CCNGG 7 cut(s) 277, 409, 807, 818, 979, 1258, 1304
Bme18I GGWCC 2 cut(s) 279, 441
BmgBI CACGTC 1 cut(s) 1367
BmgT120I GGNCC 3 cut(s) 118, 279, 441
BmiI GGNNCC 7 cut(s) 59, 281, 376, 413, 437, 1127, 1362
BmrFI CCNGG 7 cut(s) 277, 409, 807, 818, 979, 1258, 1304
BmsI GCATC 3 cut(s) 886, 1248, 1421
BpmI CTGGAG 1 cut(s) 1264
Bpu10I CCTNAGC 1 cut(s) 690
BpuEI CTTGAG 2 cut(s) 98, 918
BpuMI CCSGG 1 cut(s) 409
BsaAI YACGTR 1 cut(s) 511
BsaBI GATNNNNATC 1 cut(s) 579
BsaHI GRCGYC 2 cut(s) 375, 498
BsaJI CCNNGG 4 cut(s) 427, 806, 1115, 1234
BsaWI WCCGGW 3 cut(s) 54, 438, 501
BsaXI ACNNNNNCTCC 4 cut(s) 1114, 1117, 1144, 1147
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 685
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 1075
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 6 cut(s) 277, 807, 818, 979, 1258, 1304
BseDI CCNNGG 4 cut(s) 427, 806, 1115, 1234
BseGI GGATG 3 cut(s) 218, 859, 901
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 2 cut(s) 115, 685
BseMI GCAATG 1 cut(s) 1075
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 886, 1000, 1364
BsgI GTGCAG 1 cut(s) 840
Bsh1285I CGRYCG 3 cut(s) 349, 484, 583
BshFI GGCC 3 cut(s) 26, 119, 735
BshNI GGYRCC 2 cut(s) 57, 374
BsiEI CGRYCG 3 cut(s) 349, 484, 583
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 5 cut(s) 55, 396, 409, 439, 502
BslI CCNNNNNNNGG 2 cut(s) 115, 685
BsmAI GTCTC 3 cut(s) 397, 1161, 1228
BsmBI CGTCTC 2 cut(s) 397, 1228
BsmI GAATGC 2 cut(s) 852, 970
BsnI GGCC 3 cut(s) 26, 119, 735
Bsp1286I GDGCHC 2 cut(s) 438, 783
Bsp19I CCATGG 2 cut(s) 1115, 1234
BspANI GGCC 3 cut(s) 26, 119, 735
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 7 cut(s) 59, 281, 376, 413, 437, 1127, 1362
BspMAI CTGCAG 2 cut(s) 904, 1101
BspPI GGATC 4 cut(s) 40, 442, 899, 965
BspT107I GGYRCC 2 cut(s) 57, 374
BsrDI GCAATG 1 cut(s) 1075
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 4 cut(s) 427, 806, 1115, 1234
BssNI GRCGYC 2 cut(s) 375, 498
BssSI CACGAG 1 cut(s) 715
BssT1I CCWWGG 2 cut(s) 1115, 1234
Bst2BI CACGAG 1 cut(s) 715
Bst2UI CCWGG 6 cut(s) 277, 807, 818, 979, 1258, 1304
Bst4CI ACNGT 3 cut(s) 532, 997, 1027
Bst6I CTCTTC 3 cut(s) 214, 254, 1344
BstACI GRCGYC 2 cut(s) 375, 498
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 3 cut(s) 290, 434, 496
BstDEI CTNAG 2 cut(s) 180, 690
BstDSI CCRYGG 3 cut(s) 427, 1115, 1234
BstF5I GGATG 3 cut(s) 218, 859, 901
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 7 cut(s) 178, 198, 237, 332, 377, 382, 460
BstMAI GTCTC 3 cut(s) 397, 1161, 1228
BstMCI CGRYCG 3 cut(s) 349, 484, 583
BstMWI GCNNNNNNNGC 5 cut(s) 495, 965, 974, 1008, 1245
BstNI CCWGG 6 cut(s) 277, 807, 818, 979, 1258, 1304
BstNSI RCATGY 3 cut(s) 622, 1156, 1188
BstSCI CCNGG 7 cut(s) 275, 407, 805, 816, 977, 1256, 1302
BstSFI CTRYAG 2 cut(s) 900, 1097
BstV1I GCAGC 3 cut(s) 886, 1000, 1364
BstX2I RGATCY 2 cut(s) 904, 1084
BstXI CCANNNNNNTGG 2 cut(s) 743, 806
BstYI RGATCY 2 cut(s) 904, 1084
BsuRI GGCC 3 cut(s) 26, 119, 735
BtgI CCRYGG 3 cut(s) 427, 1115, 1234
BtgZI GCGATG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 1367
BtsCI GGATG 3 cut(s) 218, 859, 901
BtsI GCAGTG 1 cut(s) 1094
BtsIMutI CAGTG 2 cut(s) 1094, 1379
Cac8I GCNNGC 3 cut(s) 290, 434, 496
CfoI GCGC 7 cut(s) 178, 198, 237, 332, 377, 382, 460
Cfr13I GGNCC 3 cut(s) 118, 279, 441
Cfr42I CCGCGG 1 cut(s) 430
CpoI CGGWCCG 1 cut(s) 441
CseI GACGC 2 cut(s) 249, 487
CsiI ACCWGGT 1 cut(s) 816
Csp6I GTAC 8 cut(s) 4, 58, 418, 508, 571, 634, 730, 1150
CspI CGGWCCG 1 cut(s) 441
CviQI GTAC 8 cut(s) 4, 58, 418, 508, 571, 634, 730, 1150
DdeI CTNAG 2 cut(s) 180, 690
DinI GGCGCC 1 cut(s) 376
DraIII CACNNNGTG 1 cut(s) 1267
EaeI YGGCCR 1 cut(s) 733
Eam1104I CTCTTC 3 cut(s) 214, 254, 1344
EarI CTCTTC 3 cut(s) 214, 254, 1344
EciI GGCGGA 3 cut(s) 290, 678, 791
Ecl136II GAGCTC 1 cut(s) 781
Eco130I CCWWGG 2 cut(s) 1115, 1234
Eco24I GRGCYC 2 cut(s) 438, 783
Eco47I GGWCC 2 cut(s) 279, 441
Eco53kI GAGCTC 1 cut(s) 781
EcoICRI GAGCTC 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 6 cut(s) 275, 805, 816, 977, 1256, 1302
EcoT14I CCWWGG 2 cut(s) 1115, 1234
EcoT38I GRGCYC 2 cut(s) 438, 783
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
ErhI CCWWGG 2 cut(s) 1115, 1234
Esp3I CGTCTC 2 cut(s) 397, 1228
FauI CCCGC 9 cut(s) 116, 290, 325, 335, 361, 425, 487, 764, 822
FblI GTMKAC 1 cut(s) 543
FokI GGATG 3 cut(s) 205, 846, 908
FriOI GRGCYC 2 cut(s) 438, 783
FspBI CTAG 4 cut(s) 702, 1176, 1334, 1465
GlaI GCGC 7 cut(s) 177, 197, 236, 331, 376, 381, 459
GsuI CTGGAG 1 cut(s) 1264
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 3 cut(s) 26, 119, 735
HapII CCGG 5 cut(s) 55, 396, 409, 439, 502
HgaI GACGC 2 cut(s) 249, 487
HhaI GCGC 7 cut(s) 178, 198, 237, 332, 377, 382, 460
Hin1I GRCGYC 2 cut(s) 375, 498
Hin6I GCGC 7 cut(s) 176, 196, 235, 330, 375, 380, 458
HinP1I GCGC 7 cut(s) 176, 196, 235, 330, 375, 380, 458
HincII GTYRAC 2 cut(s) 544, 795
HindII GTYRAC 2 cut(s) 544, 795
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 5 cut(s) 51, 666, 713, 752, 1406
HpaI GTTAAC 1 cut(s) 795
HpaII CCGG 5 cut(s) 55, 396, 409, 439, 502
HphI GGTGA 5 cut(s) 216, 565, 806, 861, 878
Hpy166II GTNNAC 4 cut(s) 420, 544, 556, 795
Hpy188I TCNGA 4 cut(s) 50, 610, 909, 1316
Hpy188III TCNNGA 4 cut(s) 578, 598, 1082, 1243
Hpy8I GTNNAC 4 cut(s) 420, 544, 556, 795
Hpy99I CGWCG 8 cut(s) 362, 365, 368, 482, 524, 527, 545, 1371
HpyAV CCTTC 4 cut(s) 254, 343, 349, 1351
HpyCH4III ACNGT 3 cut(s) 532, 997, 1027
HpyCH4IV ACGT 2 cut(s) 510, 1366
HpyCH4V TGCA 8 cut(s) 622, 857, 902, 988, 1037, 1099, 1292, 1390
HpyF10VI GCNNNNNNNGC 5 cut(s) 495, 965, 974, 1008, 1245
HpyF3I CTNAG 2 cut(s) 180, 690
HpySE526I ACGT 2 cut(s) 510, 1366
Hsp92I GRCGYC 2 cut(s) 375, 498
HspAI GCGC 7 cut(s) 176, 196, 235, 330, 375, 380, 458
KasI GGCGCC 1 cut(s) 374
KpnI GGTACC 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 795
KspI CCGCGG 1 cut(s) 430
LmnI GCTCC 8 cut(s) 278, 441, 600, 778, 1125, 1245, 1283, 1366
Lsp1109I GCAGC 3 cut(s) 886, 1000, 1364
LweI GCATC 3 cut(s) 886, 1248, 1421
MabI ACCWGGT 1 cut(s) 816
MaeI CTAG 4 cut(s) 702, 1176, 1334, 1465
MaeII ACGT 2 cut(s) 510, 1366
MaeIII GTNAC 1 cut(s) 867
MboII GAAGA 6 cut(s) 201, 241, 529, 904, 1070, 1361
MflI RGATCY 2 cut(s) 904, 1084
MhlI GDGCHC 2 cut(s) 438, 783
MluCI AATT 3 cut(s) 547, 835, 1320
Mly113I GGCGCC 1 cut(s) 375
MlyI GAGTC 1 cut(s) 707
MroXI GAANNNNTTC 2 cut(s) 751, 1077
MseI TTAA 3 cut(s) 794, 1401, 1419
MslI CAYNNNNRTG 3 cut(s) 741, 894, 1055
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 5 cut(s) 55, 396, 409, 439, 502
MspR9I CCNGG 7 cut(s) 277, 409, 807, 818, 979, 1258, 1304
MteI GCGCNGCGC 1 cut(s) 378
Mva1269I GAATGC 2 cut(s) 852, 970
MvaI CCWGG 6 cut(s) 277, 807, 818, 979, 1258, 1304
MwoI GCNNNNNNNGC 5 cut(s) 495, 965, 974, 1008, 1245
NarI GGCGCC 1 cut(s) 375
NciI CCSGG 1 cut(s) 409
NcoI CCATGG 2 cut(s) 1115, 1234
NlaIV GGNNCC 7 cut(s) 59, 281, 376, 413, 437, 1127, 1362
NmeAIII GCCGAG 1 cut(s) 762
NmuCI GTSAC 1 cut(s) 867
NspI RCATGY 3 cut(s) 622, 1156, 1188
PciI ACATGT 2 cut(s) 1152, 1184
PcsI WCGNNNNNNNCGW 5 cut(s) 342, 396, 486, 516, 522
PctI GAATGC 2 cut(s) 852, 970
PdmI GAANNNNTTC 2 cut(s) 751, 1077
PfeI GAWTC 4 cut(s) 51, 666, 752, 1406
PflMI CCANNNNNTGG 1 cut(s) 685
PfoI TCCNGGA 1 cut(s) 275
Ple19I CGATCG 2 cut(s) 484, 583
PleI GAGTC 1 cut(s) 707
PluTI GGCGCC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 707
Ppu21I YACGTR 1 cut(s) 511
PscI ACATGT 2 cut(s) 1152, 1184
PshBI ATTAAT 1 cut(s) 1419
Psp124BI GAGCTC 1 cut(s) 783
Psp6I CCWGG 6 cut(s) 275, 805, 816, 977, 1256, 1302
PspGI CCWGG 6 cut(s) 275, 805, 816, 977, 1256, 1302
PspN4I GGNNCC 7 cut(s) 59, 281, 376, 413, 437, 1127, 1362
PspPI GGNCC 3 cut(s) 118, 279, 441
PstI CTGCAG 2 cut(s) 904, 1101
PsuI RGATCY 2 cut(s) 904, 1084
PvuI CGATCG 2 cut(s) 484, 583
RsaI GTAC 8 cut(s) 5, 59, 419, 509, 572, 635, 731, 1151
RsaNI GTAC 8 cut(s) 4, 58, 418, 508, 571, 634, 730, 1150
RseI CAYNNNNRTG 3 cut(s) 741, 894, 1055
Rsr2I CGGWCCG 1 cut(s) 441
RsrII CGGWCCG 1 cut(s) 441
SacI GAGCTC 1 cut(s) 783
SacII CCGCGG 1 cut(s) 430
SalI GTCGAC 1 cut(s) 542
SaqAI TTAA 3 cut(s) 794, 1401, 1419
Sau96I GGNCC 3 cut(s) 118, 279, 441
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 7 cut(s) 277, 409, 807, 818, 979, 1258, 1304
SduI GDGCHC 2 cut(s) 438, 783
SexAI ACCWGGT 1 cut(s) 816
SfaNI GCATC 3 cut(s) 886, 1248, 1421
SfcI CTRYAG 2 cut(s) 900, 1097
SfoI GGCGCC 1 cut(s) 376
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 2 cut(s) 279, 441
SmiMI CAYNNNNRTG 3 cut(s) 741, 894, 1055
SmlI CTYRAG 2 cut(s) 113, 933
SmoI CTYRAG 2 cut(s) 113, 933
Sse9I AATT 3 cut(s) 547, 835, 1320
SspDI GGCGCC 1 cut(s) 374
SspI AATATT 1 cut(s) 1423
SspMI CTAG 4 cut(s) 702, 1176, 1334, 1465
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 7 cut(s) 275, 407, 805, 816, 977, 1256, 1302
StyI CCWWGG 2 cut(s) 1115, 1234
TaaI ACNGT 3 cut(s) 532, 997, 1027
TaiI ACGT 2 cut(s) 513, 1369
TaqI TCGA 5 cut(s) 345, 480, 543, 642, 711
TasI AATT 3 cut(s) 547, 835, 1320
TatI WGTACW 1 cut(s) 1149
TauI GCSGC 7 cut(s) 240, 288, 380, 432, 489, 660, 663
TfiI GAWTC 4 cut(s) 51, 666, 752, 1406
Tru1I TTAA 3 cut(s) 794, 1401, 1419
Tru9I TTAA 3 cut(s) 794, 1401, 1419
TscAI CASTG 2 cut(s) 1101, 1379
TseFI GTSAC 1 cut(s) 867
TseI GCWGC 3 cut(s) 899, 988, 1377
Tsp45I GTSAC 1 cut(s) 867
TspDTI ATGAA 6 cut(s) 816, 938, 1008, 1086, 1370, 1458
TspRI CASTG 2 cut(s) 1101, 1379
Van91I CCANNNNNTGG 1 cut(s) 685
VpaK11BI GGWCC 2 cut(s) 279, 441
VspI ATTAAT 1 cut(s) 1419
XceI RCATGY 3 cut(s) 622, 1156, 1188
XcmI CCANNNNNNNNNTGG 1 cut(s) 1264
XmiI GTMKAC 1 cut(s) 543
XmnI GAANNNNTTC 2 cut(s) 751, 1077
XspI CTAG 4 cut(s) 702, 1176, 1334, 1465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.