Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017766

Physical Location & Seq

Genomic Coordinates Reverse (-)

16795545 .. 16802574

Gene Structure 7030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCCGGCCTTGTGTTCAGAGTGGTGGTGCTGGCGCATAAAAAGCCAGCAGTAACCAATAAGATCAACAATCTAGCGTTTGTTGAGATTTGCGGATGTAATTTAATGGGTGTTTTGATGAAGGAGACTGACTTTGATAATTTGGGGGTTGCGGTAATGCACAAGTTTGCCAAACTTGTAGCAGATGTGCATCGGTCAACACGATATCAAACATCCTGTAGTAGTTCTAAAGTCCCTTTGCATGGAAGTGGAGTTTTAACTTCTCAATCATCCTACCATAGCATTGGAAGAAAAAAGAATCATATTTCAGATGTTCCAGCTTCTGTGGTCTGTACTTGGTCGTCATTGGTATACAGTCCCTGGTGGAAGGAAGGTATGTTAAAAGTTTATGTTGGTAAAACTGGGCAGGAATTGACAGGTCAAACAGCCCACAGACTATGCTCAAAGACATTTGGATGGTCGCCAACTCTGTTGTCAGCTCTCTCATTGAAGGACGTTTCTTTCCTTCCAAATTCAAGCATCTCTTTGCAACCTGAGCAACTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.88

Weight (kDa)

9.49

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017766)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0329521
rosa_roxburghii	Rroxscaffold_2G00095440 Rroxscaffold_7G00189480
rosa_rugosa	Rorug01G0099000
rosa_samantha	Rh1BG128400 Rh1BG334600 Rh1CG347900 Rh1DG103100 Rh1DG365800 Rh3BG342200 Rh4BG237800 Rh6AG062400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	93, 152
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	511
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	490, 516
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	320, 479
AluI	AGCT	2 cut(s)	320, 479
Alw26I	GTCTC	1 cut(s)	119
AlwNI	CAGNNNCTG	2 cut(s)	323, 360
AoxI	GGCC	2 cut(s)	3, 7
ApoI	RAATTY	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	450
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	361
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	199, 528
BmuI	ACTGGG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	406
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	4 cut(s)	101, 212, 269, 461
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	406
BshFI	GGCC	2 cut(s)	5, 9
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	218, 342
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	218, 342
BsnI	GGCC	2 cut(s)	5, 9
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	2 cut(s)	93, 152
BspANI	GGCC	2 cut(s)	5, 9
BspCNI	CTCAG	1 cut(s)	526
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	1 cut(s)	63
BssNAI	GTATAC	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	356
BstC8I	GCNNGC	3 cut(s)	7, 33, 48
BstDEI	CTNAG	1 cut(s)	534
BstF5I	GGATG	4 cut(s)	101, 212, 269, 461
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 535
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstZ17I	GTATAC	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	5, 9
BtsCI	GGATG	4 cut(s)	101, 212, 269, 461
Cac8I	GCNNGC	3 cut(s)	7, 33, 48
CaiI	CAGNNNCTG	2 cut(s)	323, 360
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	6 cut(s)	5, 9, 46, 320, 428, 479
CviKI_1	RGCY	6 cut(s)	5, 9, 46, 320, 428, 479
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	3
Eco32I	GATATC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	206
FaeI	CATG	1 cut(s)	245
FaiI	YATR	9 cut(s)	39, 243, 279, 303, 352, 377, 390, 439, 547
FalI	AAGNNNNNCTT	2 cut(s)	508, 540
FaqI	GGGAC	2 cut(s)	218, 342
FatI	CATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	351
FokI	GGATG	4 cut(s)	108, 199, 256, 468
FseI	GGCCGGCC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	5, 9
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	198, 352
Hpy188I	TCNGA	2 cut(s)	20, 310
Hpy8I	GTNNAC	2 cut(s)	198, 352
HpyAV	CCTTC	5 cut(s)	115, 361, 365, 484, 515
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	160, 190, 241, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 535
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	35
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	63
LweI	GCATC	2 cut(s)	199, 528
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	300
MluCI	AATT	4 cut(s)	100, 139, 410, 511
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	3 cut(s)	104, 257, 380
MslI	CAYNNNNRTG	2 cut(s)	246, 454
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	43, 535
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	1 cut(s)	63
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PstNI	CAGNNNCTG	2 cut(s)	323, 360
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	2 cut(s)	246, 454
SaqAI	TTAA	3 cut(s)	104, 257, 380
Sau3AI	GATC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	6 cut(s)	322, 376, 421, 481, 498, 535
SfaNI	GCATC	2 cut(s)	199, 528
SfcI	CTRYAG	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	246, 454
Sse9I	AATT	4 cut(s)	100, 139, 410, 511
SsiI	CCGC	2 cut(s)	93, 152
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	498
TaqII	GACCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	100, 139, 410, 511
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	3 cut(s)	104, 257, 380
Tru9I	TTAA	3 cut(s)	104, 257, 380
TspDTI	ATGAA	1 cut(s)	134
XapI	RAATTY	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.