No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD14G1033200.v1.1 |
| rosa_multiflora | Rmu_sc0003093.1_g000016 |
| rosa_roxburghii | Rroxscaffold_1G00013400 Rroxscaffold_2G00105580 Rroxscaffold_3G00232690 |
| rosa_samantha | Rh3CG220800 Rh3DG221700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 113 |
| AciI | CCGC | 1 cut(s) | 246 |
| AcsI | RAATTY | 1 cut(s) | 191 |
| AdeI | CACNNNGTG | 1 cut(s) | 309 |
| AfaI | GTAC | 1 cut(s) | 127 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 366, 398 |
| AluBI | AGCT | 3 cut(s) | 58, 149, 399 |
| AluI | AGCT | 3 cut(s) | 58, 149, 399 |
| Alw21I | GWGCWC | 2 cut(s) | 135, 352 |
| Alw44I | GTGCAC | 1 cut(s) | 131 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 128 |
| AoxI | GGCC | 3 cut(s) | 77, 355, 385 |
| ApaLI | GTGCAC | 1 cut(s) | 131 |
| ApoI | RAATTY | 1 cut(s) | 191 |
| AspS9I | GGNCC | 1 cut(s) | 77 |
| AsuHPI | GGTGA | 3 cut(s) | 20, 248, 260 |
| AsuII | TTCGAA | 1 cut(s) | 189 |
| BaeGI | GKGCMC | 1 cut(s) | 135 |
| Bbv12I | GWGCWC | 2 cut(s) | 135, 352 |
| BccI | CCATC | 5 cut(s) | 2, 155, 236, 245, 306 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 30 |
| BfaI | CTAG | 2 cut(s) | 59, 150 |
| BfuAI | ACCTGC | 1 cut(s) | 113 |
| BmgT120I | GGNCC | 1 cut(s) | 77 |
| BmsI | GCATC | 1 cut(s) | 26 |
| BpmI | CTGGAG | 1 cut(s) | 38 |
| Bpu14I | TTCGAA | 1 cut(s) | 189 |
| Bsa29I | ATCGAT | 1 cut(s) | 20 |
| BsaJI | CCNNGG | 1 cut(s) | 83 |
| BseCI | ATCGAT | 1 cut(s) | 20 |
| BseDI | CCNNGG | 1 cut(s) | 83 |
| BseGI | GGATG | 2 cut(s) | 93, 97 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 135 |
| BshFI | GGCC | 3 cut(s) | 79, 357, 387 |
| BshVI | ATCGAT | 1 cut(s) | 20 |
| BsiHKAI | GWGCWC | 2 cut(s) | 135, 352 |
| BslFI | GGGAC | 1 cut(s) | 157 |
| BsmFI | GGGAC | 1 cut(s) | 157 |
| BsnI | GGCC | 3 cut(s) | 79, 357, 387 |
| Bsp119I | TTCGAA | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 2 cut(s) | 135, 352 |
| BspACI | CCGC | 1 cut(s) | 246 |
| BspANI | GGCC | 3 cut(s) | 79, 357, 387 |
| BspDI | ATCGAT | 1 cut(s) | 20 |
| BspMI | ACCTGC | 1 cut(s) | 113 |
| BspT104I | TTCGAA | 1 cut(s) | 189 |
| BssECI | CCNNGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 1 cut(s) | 130 |
| BstBI | TTCGAA | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 1 cut(s) | 173 |
| BstDEI | CTNAG | 1 cut(s) | 41 |
| BstF5I | GGATG | 2 cut(s) | 93, 97 |
| BstNSI | RCATGY | 1 cut(s) | 175 |
| BstSLI | GKGCMC | 1 cut(s) | 135 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 225 |
| Bsu15I | ATCGAT | 1 cut(s) | 20 |
| BsuRI | GGCC | 3 cut(s) | 79, 357, 387 |
| BsuTUI | ATCGAT | 1 cut(s) | 20 |
| BtgZI | GCGATG | 1 cut(s) | 21 |
| BtsCI | GGATG | 2 cut(s) | 93, 97 |
| BveI | ACCTGC | 1 cut(s) | 113 |
| Cac8I | GCNNGC | 1 cut(s) | 173 |
| CaiI | CAGNNNCTG | 1 cut(s) | 128 |
| Cfr13I | GGNCC | 1 cut(s) | 77 |
| ClaI | ATCGAT | 1 cut(s) | 20 |
| Csp6I | GTAC | 1 cut(s) | 126 |
| CviAII | CATG | 1 cut(s) | 172 |
| CviJI | RGCY | 7 cut(s) | 58, 69, 79, 149, 357, 387, 399 |
| CviKI_1 | RGCY | 7 cut(s) | 58, 69, 79, 149, 357, 387, 399 |
| CviQI | GTAC | 1 cut(s) | 126 |
| DdeI | CTNAG | 1 cut(s) | 41 |
| DraIII | CACNNNGTG | 1 cut(s) | 309 |
| FaeI | CATG | 1 cut(s) | 175 |
| FaiI | YATR | 5 cut(s) | 72, 173, 234, 259, 339 |
| FaqI | GGGAC | 1 cut(s) | 157 |
| FatI | CATG | 1 cut(s) | 171 |
| FokI | GGATG | 2 cut(s) | 84, 100 |
| FspBI | CTAG | 2 cut(s) | 59, 150 |
| GsuI | CTGGAG | 1 cut(s) | 38 |
| HaeIII | GGCC | 3 cut(s) | 79, 357, 387 |
| Hin1II | CATG | 1 cut(s) | 175 |
| HinfI | GANTC | 1 cut(s) | 51 |
| HphI | GGTGA | 3 cut(s) | 20, 248, 260 |
| Hpy166II | GTNNAC | 1 cut(s) | 133 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 316 |
| Hpy8I | GTNNAC | 1 cut(s) | 133 |
| HpyCH4III | ACNGT | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 3 cut(s) | 17, 122, 133 |
| HpyF3I | CTNAG | 1 cut(s) | 41 |
| Hsp92II | CATG | 1 cut(s) | 175 |
| LpnPI | CCDG | 3 cut(s) | 68, 108, 231 |
| LweI | GCATC | 1 cut(s) | 26 |
| MaeI | CTAG | 2 cut(s) | 59, 150 |
| MboII | GAAGA | 1 cut(s) | 337 |
| MfeI | CAATTG | 1 cut(s) | 109 |
| MhlI | GDGCHC | 2 cut(s) | 135, 352 |
| MluCI | AATT | 4 cut(s) | 109, 184, 191, 375 |
| MlyI | GAGTC | 1 cut(s) | 45 |
| MnlI | CCTC | 3 cut(s) | 78, 305, 398 |
| MunI | CAATTG | 1 cut(s) | 109 |
| NlaIII | CATG | 1 cut(s) | 175 |
| NspI | RCATGY | 1 cut(s) | 175 |
| NspV | TTCGAA | 1 cut(s) | 189 |
| PaeI | GCATGC | 1 cut(s) | 175 |
| PleI | GAGTC | 1 cut(s) | 45 |
| PpsI | GAGTC | 1 cut(s) | 45 |
| PspPI | GGNCC | 1 cut(s) | 77 |
| PstNI | CAGNNNCTG | 1 cut(s) | 128 |
| RsaI | GTAC | 1 cut(s) | 127 |
| RsaNI | GTAC | 1 cut(s) | 126 |
| Sau96I | GGNCC | 1 cut(s) | 77 |
| SchI | GAGTC | 1 cut(s) | 45 |
| SduI | GDGCHC | 2 cut(s) | 135, 352 |
| SetI | ASST | 4 cut(s) | 60, 127, 151, 401 |
| SfaNI | GCATC | 1 cut(s) | 26 |
| SfuI | TTCGAA | 1 cut(s) | 189 |
| SphI | GCATGC | 1 cut(s) | 175 |
| Sse9I | AATT | 4 cut(s) | 109, 184, 191, 375 |
| SsiI | CCGC | 1 cut(s) | 246 |
| SspMI | CTAG | 2 cut(s) | 59, 150 |
| TaaI | ACNGT | 1 cut(s) | 130 |
| TaqI | TCGA | 4 cut(s) | 20, 189, 205, 315 |
| TasI | AATT | 4 cut(s) | 109, 184, 191, 375 |
| VneI | GTGCAC | 1 cut(s) | 131 |
| XapI | RAATTY | 1 cut(s) | 191 |
| XceI | RCATGY | 1 cut(s) | 175 |
| XspI | CTAG | 2 cut(s) | 59, 150 |